Wall clock time and date at job start Tue Mar 31 2020 04:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34802 * 117.00461 * 2 1 4 4 O 1.21565 * 119.99376 * 0.02562 * 3 2 1 5 5 C 1.47027 * 120.00371 * 180.02562 * 3 2 1 6 6 C 1.36081 * 123.44239 * 359.97438 * 5 3 2 7 7 S 1.70419 * 110.95806 * 179.74795 * 6 5 3 8 8 C 1.75496 * 92.50537 * 0.35528 * 7 6 5 9 9 N 1.39368 * 124.74496 * 179.90451 * 8 7 6 10 10 C 1.34775 * 120.00039 * 359.69950 * 9 8 7 11 11 O 1.21412 * 120.00313 * 0.02562 * 10 9 8 12 12 C 1.49268 * 119.99832 * 179.97438 * 10 9 8 13 13 O 1.21375 * 120.00068 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99832 * 180.02562 * 12 10 9 15 15 C 1.46502 * 120.00053 * 180.02562 * 14 12 10 16 16 H 1.08996 * 109.47077 * 34.99783 * 15 14 12 17 17 C 1.53008 * 109.47016 * 275.00255 * 15 14 12 18 18 C 1.50695 * 109.47337 * 155.00261 * 15 14 12 19 19 H 1.07998 * 120.00418 * 5.62270 * 18 15 14 20 20 C 1.37879 * 120.00201 * 185.62926 * 18 15 14 21 21 N 1.31514 * 120.00393 * 197.18198 * 20 18 15 22 22 Si 1.86804 * 119.99786 * 17.45333 * 20 18 15 23 23 H 1.48502 * 109.47029 * 179.72709 * 22 20 18 24 24 H 1.48503 * 109.46948 * 299.72609 * 22 20 18 25 25 H 1.48492 * 109.47033 * 59.72641 * 22 20 18 26 26 C 1.33614 * 110.50712 * 359.64465 * 8 7 6 27 27 H 1.08995 * 109.47112 * 299.99629 * 1 2 3 28 28 H 1.08999 * 109.47067 * 59.99584 * 1 2 3 29 29 H 1.09003 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.08001 * 124.52193 * 0.02562 * 6 5 3 31 31 H 0.97001 * 120.00228 * 179.69667 * 9 8 7 32 32 H 0.96996 * 120.00288 * 0.02562 * 14 12 10 33 33 H 1.09002 * 109.47065 * 186.34089 * 17 15 14 34 34 H 1.09000 * 109.46665 * 306.33574 * 17 15 14 35 35 H 1.08994 * 109.46957 * 66.33318 * 17 15 14 36 36 H 0.97001 * 119.99221 * 355.17115 * 21 20 18 37 37 H 1.08001 * 123.54796 * 180.29065 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5323 1.2780 -0.0006 6 6 4.3406 0.1832 -0.0006 7 16 5.9829 0.6382 -0.0083 8 6 5.5889 2.3483 -0.0008 9 7 6.5264 3.3795 -0.0009 10 6 7.8434 3.0929 -0.0010 11 8 8.2130 1.9364 -0.0014 12 6 8.8475 4.1973 -0.0017 13 8 8.4780 5.3535 -0.0017 14 7 10.1644 3.9107 -0.0023 15 6 11.1500 4.9947 -0.0024 16 1 10.7718 5.8297 0.5874 17 6 11.3994 5.4570 -1.4394 18 6 12.4409 4.5000 0.5974 19 1 12.5499 3.4582 0.8603 20 6 13.4829 5.3774 0.8106 21 7 14.6995 4.9183 1.0070 22 14 13.1651 7.2181 0.8281 23 1 14.4390 7.9379 1.0818 24 1 12.6126 7.6375 -0.4849 25 1 12.1913 7.5421 1.9013 26 6 4.2642 2.5234 -0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9884 -0.8377 -0.0006 31 1 6.2312 4.3035 -0.0010 32 1 10.4597 2.9868 -0.0026 33 1 12.2122 6.1832 -1.4515 34 1 11.6694 4.5992 -2.0553 35 1 10.4944 5.9179 -1.8350 36 1 14.8526 3.9626 1.0718 37 1 3.7905 3.4940 -0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519803412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:35 Heat of formation + Delta-G solvation = -118.327333 kcal Electronic energy + Delta-G solvation = -24004.246802 eV Core-core repulsion = 20066.944692 eV Total energy + Delta-G solvation = -3937.302110 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89494 -40.60622 -38.70123 -37.72211 -36.56986 -35.56936 -34.67889 -32.58007 -30.10850 -29.71380 -27.98433 -25.58354 -25.10933 -24.65000 -22.11201 -21.47689 -20.29011 -19.79396 -18.60735 -18.31958 -17.80334 -17.29078 -16.74658 -16.65277 -16.31185 -16.04177 -15.43233 -15.24777 -14.34655 -14.16828 -14.03026 -13.71101 -13.39213 -13.22066 -13.06638 -13.00977 -12.84001 -12.42700 -12.33708 -11.92863 -11.84359 -11.59391 -11.29485 -11.22811 -11.13176 -10.62245 -10.59162 -10.16708 -9.90694 -9.49692 -9.23216 -8.78829 -8.57782 -8.44341 -8.42752 -6.69359 -4.33868 0.37403 0.96802 1.07708 1.64918 1.79715 2.12726 2.56961 2.80942 3.29569 3.32907 3.37076 3.51296 3.77374 4.32434 4.60374 4.66937 4.73341 4.75085 4.82671 4.99835 5.06615 5.14121 5.26992 5.41003 5.71824 5.94632 6.02012 6.19535 6.34986 6.46917 6.60985 6.71074 6.94012 7.14427 7.33777 7.45623 7.46776 8.04011 8.16017 8.32267 8.67445 9.35642 10.72113 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.037304 B = 0.002269 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.407416 B =12336.724845 C =12843.477656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.530 3.470 4 O -0.507 6.507 5 C -0.132 4.132 6 C -0.236 4.236 7 S 0.328 5.672 8 C 0.013 3.987 9 N -0.611 5.611 10 C 0.502 3.498 11 O -0.494 6.494 12 C 0.501 3.499 13 O -0.532 6.532 14 N -0.657 5.657 15 C 0.239 3.761 16 H 0.047 0.953 17 C -0.163 4.163 18 C -0.623 4.623 19 H 0.065 0.935 20 C 0.041 3.959 21 N -0.892 5.892 22 Si 1.041 2.959 23 H -0.281 1.281 24 H -0.271 1.271 25 H -0.279 1.279 26 C -0.136 4.136 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.180 0.820 31 H 0.432 0.568 32 H 0.408 0.592 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.271 0.729 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.376 -10.259 -2.960 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.373 3.627 4 O -0.396 6.396 5 C -0.149 4.149 6 C -0.375 4.375 7 S 0.592 5.408 8 C -0.200 4.200 9 N -0.258 5.258 10 C 0.285 3.715 11 O -0.368 6.368 12 C 0.279 3.721 13 O -0.410 6.410 14 N -0.306 5.306 15 C 0.137 3.863 16 H 0.065 0.935 17 C -0.221 4.221 18 C -0.660 4.660 19 H 0.083 0.917 20 C -0.167 4.167 21 N -0.524 5.524 22 Si 0.869 3.131 23 H -0.207 1.207 24 H -0.197 1.197 25 H -0.205 1.205 26 C -0.168 4.168 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.197 0.803 31 H 0.272 0.728 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.330 -9.230 -2.839 23.415 hybrid contribution -2.526 -0.734 -0.074 2.632 sum -23.856 -9.965 -2.913 26.018 Atomic orbital electron populations 1.23280 0.75893 1.03753 1.02714 1.86550 1.23573 1.32619 1.84561 1.20472 0.88228 0.81369 0.72610 1.90857 1.66751 1.35951 1.46040 1.18749 0.89815 0.92649 1.13682 1.26526 1.02311 1.03771 1.04920 1.84381 0.97641 0.92300 1.66517 1.21951 0.91939 0.95586 1.10511 1.42607 1.03933 1.09493 1.69742 1.21140 0.83222 0.90574 0.76573 1.90660 1.78637 1.20890 1.46622 1.19396 0.84305 0.87841 0.80548 1.90757 1.79858 1.19952 1.50441 1.46270 1.03806 1.12978 1.67552 1.19280 0.86855 0.86186 0.93990 0.93502 1.22528 1.00155 1.00973 0.98469 1.22035 0.98155 0.97800 1.48037 0.91673 1.25710 0.91817 1.06281 0.92878 1.70874 1.19941 1.16980 1.44612 0.84087 0.76248 0.75010 0.77789 1.20695 1.19674 1.20498 1.20613 0.89897 0.98824 1.07427 0.91772 0.91785 0.87950 0.80312 0.72780 0.75668 0.91339 0.93302 0.94947 0.91896 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.30 16 2 O -0.36 -3.37 10.21 -40.77 -0.42 -3.79 16 3 C 0.53 6.10 7.92 34.29 0.27 6.37 16 4 O -0.51 -7.00 16.59 -19.32 -0.32 -7.32 16 5 C -0.13 -1.44 5.98 -104.66 -0.63 -2.07 16 6 C -0.24 -2.17 10.54 29.96 0.32 -1.85 16 7 S 0.33 3.43 20.05 -107.50 -2.16 1.28 16 8 C 0.01 0.15 7.10 -15.74 -0.11 0.04 16 9 N -0.61 -7.53 5.41 -11.48 -0.06 -7.59 16 10 C 0.50 7.48 7.85 -11.67 -0.09 7.39 16 11 O -0.49 -7.66 13.94 5.44 0.08 -7.58 16 12 C 0.50 8.92 7.85 -11.67 -0.09 8.83 16 13 O -0.53 -10.37 16.14 5.48 0.09 -10.28 16 14 N -0.66 -12.82 5.06 -55.42 -0.28 -13.11 16 15 C 0.24 5.43 2.14 -69.08 -0.15 5.28 16 16 H 0.05 1.13 6.23 -51.93 -0.32 0.80 16 17 C -0.16 -3.45 9.16 37.16 0.34 -3.11 16 18 C -0.62 -16.18 9.00 -34.44 -0.31 -16.49 16 19 H 0.07 1.79 7.96 -52.49 -0.42 1.37 16 20 C 0.04 1.10 5.29 -17.82 -0.09 1.00 16 21 N -0.89 -25.73 13.70 55.43 0.76 -24.97 16 22 Si 1.04 23.87 26.29 -169.99 -4.47 19.40 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -5.73 5.76 56.52 0.33 -5.41 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.14 -1.51 10.11 -38.75 -0.39 -1.90 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.18 1.22 8.01 -52.49 -0.42 0.80 16 31 H 0.43 4.67 8.27 -40.82 -0.34 4.34 16 32 H 0.41 7.51 7.99 -40.82 -0.33 7.18 16 33 H 0.07 1.49 4.88 -51.93 -0.25 1.23 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16 37 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -31.02 341.69 -5.34 -36.36 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.84 Total: 7.65 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 0.13 Total: 4.80 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.42 Total: -45.67 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.57 Total: -28.97 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.47 Total: 19.40 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.16 Total: 1.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.02 -5.34 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519803412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.969 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds