Wall clock time and date at job start Tue Mar 31 2020 04:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34802 * 117.00461 * 2 1 4 4 O 1.21565 * 119.99376 * 0.02562 * 3 2 1 5 5 C 1.47027 * 120.00371 * 180.02562 * 3 2 1 6 6 C 1.36081 * 123.44239 * 359.97438 * 5 3 2 7 7 S 1.70419 * 110.95806 * 179.74795 * 6 5 3 8 8 C 1.75496 * 92.50537 * 0.35528 * 7 6 5 9 9 N 1.39368 * 124.74496 * 179.90451 * 8 7 6 10 10 C 1.34775 * 120.00039 * 359.69950 * 9 8 7 11 11 O 1.21412 * 120.00313 * 0.02562 * 10 9 8 12 12 C 1.49268 * 119.99832 * 179.97438 * 10 9 8 13 13 O 1.21375 * 120.00068 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99832 * 180.02562 * 12 10 9 15 15 C 1.46502 * 120.00053 * 180.02562 * 14 12 10 16 16 H 1.08996 * 109.47077 * 34.99783 * 15 14 12 17 17 C 1.53008 * 109.47016 * 275.00255 * 15 14 12 18 18 C 1.50695 * 109.47337 * 155.00261 * 15 14 12 19 19 H 1.07998 * 120.00418 * 5.62270 * 18 15 14 20 20 C 1.37879 * 120.00201 * 185.62926 * 18 15 14 21 21 N 1.31514 * 120.00393 * 197.18198 * 20 18 15 22 22 Si 1.86804 * 119.99786 * 17.45333 * 20 18 15 23 23 H 1.48502 * 109.47029 * 179.72709 * 22 20 18 24 24 H 1.48503 * 109.46948 * 299.72609 * 22 20 18 25 25 H 1.48492 * 109.47033 * 59.72641 * 22 20 18 26 26 C 1.33614 * 110.50712 * 359.64465 * 8 7 6 27 27 H 1.08995 * 109.47112 * 299.99629 * 1 2 3 28 28 H 1.08999 * 109.47067 * 59.99584 * 1 2 3 29 29 H 1.09003 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.08001 * 124.52193 * 0.02562 * 6 5 3 31 31 H 0.97001 * 120.00228 * 179.69667 * 9 8 7 32 32 H 0.96996 * 120.00288 * 0.02562 * 14 12 10 33 33 H 1.09002 * 109.47065 * 186.34089 * 17 15 14 34 34 H 1.09000 * 109.46665 * 306.33574 * 17 15 14 35 35 H 1.08994 * 109.46957 * 66.33318 * 17 15 14 36 36 H 0.97001 * 119.99221 * 355.17115 * 21 20 18 37 37 H 1.08001 * 123.54796 * 180.29065 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5323 1.2780 -0.0006 6 6 4.3406 0.1832 -0.0006 7 16 5.9829 0.6382 -0.0083 8 6 5.5889 2.3483 -0.0008 9 7 6.5264 3.3795 -0.0009 10 6 7.8434 3.0929 -0.0010 11 8 8.2130 1.9364 -0.0014 12 6 8.8475 4.1973 -0.0017 13 8 8.4780 5.3535 -0.0017 14 7 10.1644 3.9107 -0.0023 15 6 11.1500 4.9947 -0.0024 16 1 10.7718 5.8297 0.5874 17 6 11.3994 5.4570 -1.4394 18 6 12.4409 4.5000 0.5974 19 1 12.5499 3.4582 0.8603 20 6 13.4829 5.3774 0.8106 21 7 14.6995 4.9183 1.0070 22 14 13.1651 7.2181 0.8281 23 1 14.4390 7.9379 1.0818 24 1 12.6126 7.6375 -0.4849 25 1 12.1913 7.5421 1.9013 26 6 4.2642 2.5234 -0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9884 -0.8377 -0.0006 31 1 6.2312 4.3035 -0.0010 32 1 10.4597 2.9868 -0.0026 33 1 12.2122 6.1832 -1.4515 34 1 11.6694 4.5992 -2.0553 35 1 10.4944 5.9179 -1.8350 36 1 14.8526 3.9626 1.0718 37 1 3.7905 3.4940 -0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519803412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:35 Heat of formation + Delta-G solvation = -140.872829 kcal Electronic energy + Delta-G solvation = -24005.224448 eV Core-core repulsion = 20066.944692 eV Total energy + Delta-G solvation = -3938.279756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10821 -41.44964 -40.06429 -38.64828 -37.43231 -37.12762 -35.83806 -34.49074 -31.76376 -30.67646 -28.62857 -27.02080 -26.49992 -25.81383 -23.19389 -22.70210 -21.66222 -21.10279 -20.04283 -19.33653 -18.94375 -18.62679 -17.82543 -17.43482 -17.35547 -17.24702 -16.76185 -16.38374 -15.76630 -15.48105 -15.08521 -14.85714 -14.68524 -14.60743 -14.27515 -14.03781 -13.93117 -13.84556 -13.61048 -13.39409 -13.04265 -12.99616 -12.42195 -12.23093 -12.16787 -11.97308 -11.82751 -11.67575 -11.51930 -11.18343 -10.84139 -10.48683 -10.20475 -9.62913 -9.35210 -8.82787 -6.47566 -0.49706 -0.00671 0.12632 0.76671 0.77324 1.06936 1.48437 1.54160 1.71746 1.76351 1.89578 2.05984 2.43265 2.53484 3.00352 3.29856 3.86101 3.92428 4.16614 4.29910 4.34126 4.37789 4.42594 4.57593 4.67631 4.70179 4.71601 4.88409 4.99770 5.04125 5.24286 5.26799 5.43225 5.51005 5.66050 5.97547 6.22875 6.46403 6.51500 6.64719 6.88418 7.29385 8.57853 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.037304 B = 0.002269 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.407416 B =12336.724845 C =12843.477656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.532 3.468 4 O -0.538 6.538 5 C -0.156 4.156 6 C -0.206 4.206 7 S 0.331 5.669 8 C -0.011 4.011 9 N -0.597 5.597 10 C 0.511 3.489 11 O -0.503 6.503 12 C 0.505 3.495 13 O -0.547 6.547 14 N -0.665 5.665 15 C 0.242 3.758 16 H 0.039 0.961 17 C -0.157 4.157 18 C -0.619 4.619 19 H 0.039 0.961 20 C -0.005 4.005 21 N -0.924 5.924 22 Si 1.073 2.927 23 H -0.285 1.285 24 H -0.241 1.241 25 H -0.269 1.269 26 C -0.126 4.126 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.136 0.864 30 H 0.207 0.793 31 H 0.438 0.562 32 H 0.412 0.588 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.258 0.742 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.629 -10.719 -3.540 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.377 3.623 4 O -0.430 6.430 5 C -0.172 4.172 6 C -0.345 4.345 7 S 0.595 5.405 8 C -0.223 4.223 9 N -0.244 5.244 10 C 0.293 3.707 11 O -0.378 6.378 12 C 0.285 3.715 13 O -0.426 6.426 14 N -0.315 5.315 15 C 0.138 3.862 16 H 0.057 0.943 17 C -0.215 4.215 18 C -0.657 4.657 19 H 0.057 0.943 20 C -0.206 4.206 21 N -0.558 5.558 22 Si 0.895 3.105 23 H -0.210 1.210 24 H -0.165 1.165 25 H -0.194 1.194 26 C -0.157 4.157 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.224 0.776 31 H 0.280 0.720 32 H 0.248 0.752 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.642 -9.727 -3.431 25.794 hybrid contribution -1.990 -0.760 0.130 2.134 sum -25.631 -10.487 -3.301 27.890 Atomic orbital electron populations 1.23601 0.74138 1.05968 1.02660 1.86537 1.25286 1.31384 1.83979 1.20564 0.88383 0.81528 0.71844 1.90841 1.67394 1.36995 1.47772 1.18818 0.89923 0.93020 1.15447 1.26768 1.01216 1.04653 1.01848 1.84434 0.98331 0.91608 1.66162 1.22029 0.91874 0.95834 1.12537 1.42376 1.03079 1.10213 1.68726 1.20356 0.83528 0.89387 0.77435 1.90671 1.78979 1.20674 1.47518 1.19717 0.84091 0.88427 0.79261 1.90743 1.80132 1.20973 1.50718 1.46064 1.04308 1.12439 1.68648 1.19019 0.85987 0.86596 0.94590 0.94302 1.22415 1.00709 1.01113 0.97298 1.22198 0.99744 0.96561 1.47150 0.94251 1.26939 0.91426 1.10038 0.92234 1.70987 1.21308 1.16123 1.47408 0.83700 0.76387 0.70814 0.79626 1.21033 1.16500 1.19428 1.20743 0.89729 0.99415 1.05797 0.91895 0.91862 0.84614 0.77628 0.72017 0.75207 0.91887 0.92873 0.93288 0.93266 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.36 -5.94 10.21 -57.13 -0.58 -6.52 16 3 C 0.53 11.44 7.92 70.13 0.56 11.99 16 4 O -0.54 -14.44 16.59 19.62 0.33 -14.11 16 5 C -0.16 -3.10 5.98 -19.89 -0.12 -3.22 16 6 C -0.21 -3.22 10.54 67.32 0.71 -2.51 16 7 S 0.33 6.25 20.05 -56.49 -1.13 5.12 16 8 C -0.01 -0.24 7.10 82.44 0.59 0.35 16 9 N -0.60 -13.84 5.41 -308.57 -1.67 -15.51 16 10 C 0.51 14.57 7.85 87.21 0.68 15.25 16 11 O -0.50 -14.98 13.94 -3.44 -0.05 -15.03 16 12 C 0.51 17.42 7.85 87.21 0.68 18.10 16 13 O -0.55 -20.53 16.14 -3.32 -0.05 -20.59 16 14 N -0.67 -25.53 5.06 -447.61 -2.27 -27.80 16 15 C 0.24 10.78 2.14 44.25 0.09 10.87 16 16 H 0.04 1.82 6.23 -2.39 -0.01 1.81 16 17 C -0.16 -6.38 9.16 71.98 0.66 -5.72 16 18 C -0.62 -32.46 9.00 25.60 0.23 -32.23 16 19 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 20 C -0.01 -0.29 5.29 84.66 0.45 0.16 16 21 N -0.92 -54.44 13.70 21.45 0.29 -54.14 16 22 Si 1.07 47.35 26.29 68.60 1.80 49.15 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.24 -9.42 5.76 99.48 0.57 -8.85 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C -0.13 -2.58 10.11 22.81 0.23 -2.35 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.21 2.03 8.01 -2.91 -0.02 2.01 16 31 H 0.44 8.86 8.27 -92.71 -0.77 8.10 16 32 H 0.41 15.10 7.99 -92.71 -0.74 14.36 16 33 H 0.06 2.61 4.88 -2.39 -0.01 2.60 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.26 15.32 8.73 -92.71 -0.81 14.51 16 37 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -66.45 341.69 2.11 -64.34 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.52 Total: 22.89 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.96 Total: 12.21 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -3.64 Total: -97.45 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -0.36 Total: -56.26 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.80 Total: 49.15 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.13 Total: 5.12 kcal Total: -66.45 2.11 -64.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519803412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.533 kcal (2) G-P(sol) polarization free energy of solvation -66.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds