Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38251 * 119.99979 * 2 1 4 4 C 1.38211 * 120.00406 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00271 * 179.97438 * 5 4 3 7 7 C 1.38220 * 119.99709 * 0.02562 * 5 4 3 8 8 S 1.76202 * 119.99591 * 179.97438 * 7 5 4 9 9 O 1.42093 * 106.40347 * 311.72985 * 8 7 5 10 10 O 1.42099 * 106.39941 * 178.81038 * 8 7 5 11 11 N 1.65604 * 107.21884 * 65.27349 * 8 7 5 12 12 C 1.46500 * 119.99878 * 64.02592 * 11 8 7 13 13 C 1.50704 * 109.46495 * 162.81325 * 12 11 8 14 14 O 1.21285 * 120.00541 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99601 * 179.97438 * 13 12 11 16 16 C 1.46502 * 119.99936 * 0.02562 * 15 13 12 17 17 C 1.37095 * 120.00057 * 179.97438 * 15 13 12 18 18 H 1.07998 * 119.99719 * 23.20633 * 17 15 13 19 19 C 1.38954 * 120.00247 * 203.20837 * 17 15 13 20 20 N 1.31410 * 119.99641 * 10.44828 * 19 17 15 21 21 Si 1.86795 * 119.99918 * 190.44712 * 19 17 15 22 22 H 1.48500 * 109.46990 * 90.00260 * 21 19 17 23 23 H 1.48497 * 109.47168 * 209.99774 * 21 19 17 24 24 H 1.48497 * 109.47662 * 330.00022 * 21 19 17 25 25 C 1.38219 * 120.00115 * 180.27645 * 2 1 3 26 26 H 1.09006 * 109.47360 * 90.00253 * 1 2 3 27 27 H 1.08998 * 109.47312 * 209.99766 * 1 2 3 28 28 H 1.08993 * 109.47838 * 330.00375 * 1 2 3 29 29 H 1.08005 * 120.00191 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00272 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47476 * 264.39208 * 6 5 4 32 32 H 1.08997 * 109.47018 * 24.39307 * 6 5 4 33 33 H 1.08999 * 109.47223 * 144.38842 * 6 5 4 34 34 H 0.97000 * 119.99409 * 243.75123 * 11 8 7 35 35 H 1.09000 * 109.47232 * 282.80890 * 12 11 8 36 36 H 1.08999 * 109.47091 * 42.81131 * 12 11 8 37 37 H 1.08996 * 109.47452 * 91.22610 * 16 15 13 38 38 H 1.09001 * 109.46844 * 211.22935 * 16 15 13 39 39 H 1.09001 * 109.47058 * 331.22212 * 16 15 13 40 40 H 0.97000 * 119.99611 * 179.97438 * 20 19 17 41 41 H 1.07995 * 119.99571 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0001 -0.0017 7 6 3.5806 -1.1969 -0.0005 8 16 4.4617 -2.7228 -0.0012 9 8 5.4477 -2.6164 -1.0188 10 8 3.4821 -3.7518 0.0272 11 7 5.2804 -2.8168 1.4352 12 6 4.5398 -2.8825 2.6975 13 6 5.4521 -3.3780 3.7899 14 8 6.6071 -3.6498 3.5387 15 7 4.9845 -3.5189 5.0461 16 6 3.5892 -3.1911 5.3494 17 6 5.8143 -3.9701 6.0398 18 1 6.8841 -3.8602 5.9413 19 6 5.2788 -4.5688 7.1737 20 7 4.0048 -4.8892 7.2080 21 14 6.3699 -4.9180 8.6490 22 1 6.3556 -3.7480 9.5634 23 1 5.8624 -6.1142 9.3679 24 1 7.7592 -5.1696 8.1889 25 6 2.1981 -1.1970 -0.0058 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5137 29 1 1.6582 2.1327 -0.0004 30 1 4.1203 2.1327 -0.0010 31 1 6.1413 -0.1008 -1.0246 32 1 6.1423 0.9362 0.4220 33 1 6.1425 -0.8351 0.5968 34 1 6.2503 -2.8323 1.4405 35 1 4.1710 -1.8895 2.9546 36 1 3.6977 -3.5661 2.5895 37 1 2.9733 -4.0830 5.2354 38 1 3.5161 -2.8275 6.3744 39 1 3.2403 -2.4185 4.6642 40 1 3.6311 -5.3074 7.9994 41 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571684658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = -99.839805 kcal Electronic energy + Delta-G solvation = -25991.655191 eV Core-core repulsion = 22190.987854 eV Total energy + Delta-G solvation = -3800.667337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54871 -40.45769 -38.46976 -37.05359 -36.92428 -35.68062 -34.82356 -33.65168 -32.28122 -30.24547 -29.04907 -27.68722 -25.92742 -25.81202 -24.37636 -22.36248 -21.14237 -20.52889 -19.09015 -18.78381 -18.15431 -17.65511 -17.44556 -16.71716 -16.58080 -16.39636 -16.29110 -15.89317 -15.36766 -15.24029 -15.07730 -14.47250 -14.16238 -14.06681 -13.90274 -13.63798 -13.49266 -13.36418 -13.32741 -13.22860 -13.16346 -13.09424 -13.03298 -12.80939 -12.65479 -12.64588 -12.34129 -12.17474 -12.13283 -11.69752 -11.01993 -10.73208 -10.39561 -10.34930 -9.72089 -9.56159 -8.33539 -6.00435 -0.73876 -0.20053 0.28064 1.37807 1.42787 1.54471 1.83796 1.94426 2.27790 2.42360 2.69411 2.98886 3.08873 3.33694 3.68046 3.77847 3.79827 3.95326 4.17195 4.20271 4.26448 4.35641 4.44474 4.55743 4.58675 4.68016 4.72778 4.77517 4.86210 4.93264 5.05620 5.08863 5.12652 5.29305 5.34434 5.41386 5.45095 5.48054 5.87686 5.90774 6.08998 6.44725 7.13220 7.41993 7.94603 8.67896 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.003522 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.664616 B = 7948.499010 C = 8540.226514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C -0.057 4.057 4 C -0.140 4.140 5 C 0.003 3.997 6 C -0.154 4.154 7 C -0.682 4.682 8 S 2.710 3.290 9 O -0.978 6.978 10 O -0.989 6.989 11 N -1.102 6.102 12 C 0.119 3.881 13 C 0.433 3.567 14 O -0.622 6.622 15 N -0.456 5.456 16 C 0.113 3.887 17 C -0.345 4.345 18 H 0.075 0.925 19 C 0.000 4.000 20 N -0.895 5.895 21 Si 0.991 3.009 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.277 1.277 25 C -0.038 4.038 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.424 0.576 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.274 0.726 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 15.455 -12.004 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 C -0.075 4.075 4 C -0.159 4.159 5 C 0.001 3.999 6 C -0.210 4.210 7 C -0.773 4.773 8 S 2.804 3.196 9 O -0.969 6.969 10 O -0.979 6.979 11 N -0.865 5.865 12 C -0.011 4.011 13 C 0.221 3.779 14 O -0.509 6.509 15 N -0.174 5.174 16 C -0.030 4.030 17 C -0.473 4.473 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.533 5.533 21 Si 0.814 3.186 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.202 1.202 25 C -0.057 4.057 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.181 0.819 30 H 0.177 0.823 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.263 0.737 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.637 14.579 -12.601 21.117 hybrid contribution 0.764 -0.141 1.101 1.347 sum -7.873 14.438 -11.500 20.067 Atomic orbital electron populations 1.20887 0.88508 1.04252 1.03546 1.20378 0.98067 0.92583 1.00824 1.21781 0.94197 0.98826 0.92693 1.21531 0.94945 0.97900 1.01482 1.19772 0.96302 0.92226 0.91597 1.21375 0.90053 1.05139 1.04463 1.30355 1.06553 1.18590 1.21767 1.01069 0.72684 0.74212 0.71638 1.93557 1.60168 1.87817 1.55316 1.93520 1.62215 1.55720 1.86424 1.55153 1.19540 1.91369 1.20409 1.20970 0.93897 1.03538 0.82699 1.20649 0.89171 0.84329 0.83755 1.90465 1.20660 1.57647 1.82155 1.43800 1.11502 1.55795 1.06340 1.21591 0.81098 0.99318 1.00976 1.19658 0.91185 1.38715 0.97779 0.90709 1.26092 0.97833 0.94738 1.01574 1.70063 1.13224 1.39688 1.30315 0.84971 0.77877 0.78269 0.77449 1.18882 1.19995 1.20185 1.21046 0.91458 1.00167 0.93073 0.89940 0.91042 0.89434 0.81880 0.82261 0.88692 0.87539 0.92117 0.73739 0.86901 0.87745 0.93264 0.92219 0.90882 0.91603 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.12 -2.05 5.88 -19.87 -0.12 -2.17 16 3 C -0.06 -0.83 9.70 22.27 0.22 -0.61 16 4 C -0.14 -2.31 9.68 22.27 0.22 -2.10 16 5 C 0.00 0.06 5.87 -19.87 -0.12 -0.06 16 6 C -0.15 -3.21 8.60 71.24 0.61 -2.60 16 7 C -0.68 -17.43 5.86 22.27 0.13 -17.30 16 8 S 2.71 84.49 4.94 -56.49 -0.28 84.21 16 9 O -0.98 -33.60 16.44 -128.00 -2.10 -35.70 16 10 O -0.99 -35.52 16.44 -128.00 -2.10 -37.63 16 11 N -1.10 -36.53 4.73 -190.79 -0.90 -37.43 16 12 C 0.12 4.15 5.24 85.63 0.45 4.60 16 13 C 0.43 20.55 7.70 87.66 0.67 21.22 16 14 O -0.62 -33.87 15.45 -3.05 -0.05 -33.92 16 15 N -0.46 -22.86 3.02 -658.89 -1.99 -24.85 16 16 C 0.11 4.75 8.51 127.77 1.09 5.84 16 17 C -0.35 -19.23 9.28 84.04 0.78 -18.45 16 18 H 0.07 4.43 7.41 -2.91 -0.02 4.41 16 19 C 0.00 -0.01 5.13 84.93 0.44 0.43 16 20 N -0.89 -46.37 10.60 21.66 0.23 -46.14 16 21 Si 0.99 41.74 29.57 68.60 2.03 43.77 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 C -0.04 -0.87 9.21 22.27 0.20 -0.66 16 26 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 29 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.09 1.98 8.00 -2.39 -0.02 1.96 16 32 H 0.11 1.61 8.05 -2.39 -0.02 1.59 16 33 H 0.06 1.44 5.49 -2.39 -0.01 1.43 16 34 H 0.42 14.63 7.40 -96.75 -0.72 13.91 16 35 H 0.11 3.15 7.40 -2.39 -0.02 3.13 16 36 H 0.10 3.49 7.70 -2.39 -0.02 3.48 16 37 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 38 H 0.06 2.65 7.02 -2.39 -0.02 2.63 16 39 H 0.07 2.33 6.39 -2.39 -0.02 2.32 16 40 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 41 H 0.14 3.18 7.33 -2.91 -0.02 3.15 16 Total: -1.00 -74.30 351.69 0.47 -73.83 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.35 Total: 26.36 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.28 Total: -12.49 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -2.66 Total: -108.42 kcal Atomic # 8 Polarization: -102.99 SS G_CDS: -4.26 Total: -107.25 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 84.49 SS G_CDS: -0.28 Total: 84.21 kcal Total: -74.30 0.47 -73.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571684658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.007 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds