Wall clock time and date at job start Tue Mar 31 2020 04:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21662 * 120.00151 * 359.97438 * 14 13 3 16 16 C 1.46886 * 119.99510 * 179.97438 * 14 13 3 17 17 S 1.75782 * 125.16832 * 0.02562 * 16 14 13 18 18 C 1.76179 * 90.70836 * 179.97438 * 17 16 14 19 19 N 1.31937 * 141.94474 * 180.02562 * 18 17 16 20 20 N 1.39886 * 107.84798 * 179.97438 * 19 18 17 21 21 C 1.30697 * 108.10964 * 0.02562 * 20 19 18 22 22 S 1.76197 * 125.88968 * 180.02562 * 21 20 19 23 23 N 1.35944 * 109.49524 * 0.02562 * 18 17 16 24 24 C 1.32841 * 125.15808 * 179.71752 * 16 14 13 25 25 C 1.50700 * 121.90637 * 0.02562 * 24 16 14 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 33 33 H 1.34502 * 103.00321 * 270.00128 * 22 21 20 34 34 H 1.08999 * 109.47038 * 90.02475 * 25 24 16 35 35 H 1.08997 * 109.47574 * 210.02596 * 25 24 16 36 36 H 1.09004 * 109.47128 * 330.02738 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3420 2.6319 -0.4316 16 6 0.0468 3.3214 -2.6220 17 16 1.0582 3.4469 -4.0543 18 6 -0.2134 4.3232 -4.9022 19 7 -0.4882 4.8926 -6.0602 20 7 -1.7826 5.4174 -5.9835 21 6 -2.2567 5.1571 -4.7937 22 16 -3.8520 5.6072 -4.1962 23 7 -1.2895 4.4657 -4.0838 24 6 -1.1243 3.9060 -2.8489 25 6 -2.2069 3.9536 -1.8017 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 5.8770 0.4827 2.1133 32 1 2.2720 2.1231 -1.9978 33 1 -3.6405 6.8188 -3.6520 34 1 -2.0915 4.8554 -1.2005 35 1 -3.1825 3.9634 -2.2878 36 1 -2.1298 3.0763 -1.1593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:18 Heat of formation + Delta-G solvation = 91.147506 kcal Electronic energy + Delta-G solvation = -23083.710240 eV Core-core repulsion = 19630.537263 eV Total energy + Delta-G solvation = -3453.172978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 326.061 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.11923 -39.83368 -37.40109 -35.54645 -32.69957 -31.98732 -31.70021 -31.39583 -28.93056 -27.57338 -24.55334 -23.74376 -22.80612 -22.16603 -20.67071 -20.00615 -18.91116 -18.13740 -17.57861 -17.10219 -16.53989 -16.13210 -15.70860 -15.61252 -15.00559 -14.56685 -13.85471 -13.73500 -13.65149 -13.16498 -12.94374 -12.55094 -12.46250 -12.14061 -12.07504 -11.94836 -11.81258 -11.65547 -11.53446 -11.24049 -11.07527 -11.01026 -10.77386 -10.08304 -9.99454 -9.80944 -9.52250 -9.39448 -8.90566 -8.86433 -8.40030 -8.19426 -6.32281 -4.36815 0.00713 0.24429 0.34017 1.11154 1.28687 1.52125 1.88823 2.23817 3.13959 3.18246 3.27310 3.29071 3.43774 3.78520 4.20206 4.35634 4.52978 4.59629 5.00476 5.01260 5.18342 5.32252 5.51805 5.79922 5.87014 5.88849 6.00308 6.18926 6.48098 6.54591 6.63507 6.76280 6.95562 7.09772 7.14902 7.30351 7.84452 8.26576 8.41586 8.66410 9.26160 10.79463 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.024320 B = 0.003466 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.060087 B = 8077.281029 C = 8841.605043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.245 3.755 4 H 0.056 0.944 5 C -0.542 4.542 6 H 0.082 0.918 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.684 5.684 14 C 0.587 3.413 15 O -0.522 6.522 16 C -0.244 4.244 17 S 0.256 5.744 18 C 0.159 3.841 19 N -0.280 5.280 20 N -0.221 5.221 21 C 0.197 3.803 22 S 0.031 5.969 23 N -0.428 5.428 24 C 0.154 3.846 25 C -0.119 4.119 26 H 0.035 0.965 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.269 0.731 32 H 0.394 0.606 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 5.772 -8.018 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.142 3.858 4 H 0.073 0.927 5 C -0.580 4.580 6 H 0.100 0.900 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.331 5.331 14 C 0.370 3.630 15 O -0.401 6.401 16 C -0.367 4.367 17 S 0.504 5.496 18 C -0.218 4.218 19 N -0.120 5.120 20 N -0.052 5.052 21 C -0.185 4.185 22 S 0.181 5.819 23 N -0.121 5.121 24 C 0.040 3.960 25 C -0.178 4.178 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.233 5.905 -9.014 18.659 hybrid contribution -0.194 0.281 1.777 1.810 sum -15.427 6.185 -7.236 18.128 Atomic orbital electron populations 1.21898 0.96848 0.99447 1.02133 1.22317 0.94454 0.99616 1.01573 1.19303 0.96114 0.88645 0.81740 0.92665 1.20989 0.88246 1.40525 1.08203 0.90030 1.24818 0.94889 0.94988 0.97615 1.69854 1.08704 1.43965 1.29804 0.86913 0.80911 0.80036 0.80960 1.20094 1.22036 1.18388 1.46113 1.13555 1.54894 1.18558 1.16433 0.83417 0.78955 0.84227 1.90756 1.50821 1.60421 1.38098 1.23766 0.98041 1.12522 1.02368 1.85263 1.08063 1.56060 1.00215 1.28293 0.94580 1.04810 0.94090 1.78480 1.04698 1.15450 1.13377 1.78150 1.01208 1.13935 1.11913 1.25916 0.96906 1.03595 0.92119 1.86196 0.97041 1.24394 1.74304 1.45458 1.12694 1.41931 1.12033 1.19451 0.97581 0.94056 0.84947 1.21338 0.93971 1.07132 0.95315 0.94637 0.93098 0.92648 0.92373 0.92006 0.92093 0.77233 0.95078 0.89204 0.89442 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.51 37.16 0.32 -2.25 16 2 C -0.14 -2.82 5.11 -26.73 -0.14 -2.96 16 3 C 0.24 5.22 1.83 -69.08 -0.13 5.09 16 4 H 0.06 1.28 6.64 -51.93 -0.34 0.94 16 5 C -0.54 -13.60 9.31 -34.44 -0.32 -13.92 16 6 H 0.08 2.17 7.98 -52.48 -0.42 1.75 16 7 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 8 N -0.89 -25.05 13.96 55.43 0.77 -24.28 16 9 Si 0.88 20.29 24.41 -169.99 -4.15 16.14 16 10 H -0.27 -6.12 6.83 56.52 0.39 -5.74 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.26 -5.80 6.53 56.52 0.37 -5.43 16 13 N -0.68 -12.06 5.02 -56.18 -0.28 -12.35 16 14 C 0.59 9.48 6.34 -12.76 -0.08 9.40 16 15 O -0.52 -9.20 11.04 5.22 0.06 -9.14 16 16 C -0.24 -3.28 6.32 -37.94 -0.24 -3.52 16 17 S 0.26 3.10 22.40 -107.50 -2.41 0.69 16 18 C 0.16 2.21 8.98 -88.34 -0.79 1.42 16 19 N -0.28 -4.32 12.76 30.67 0.39 -3.93 16 20 N -0.22 -3.23 12.69 30.96 0.39 -2.83 16 21 C 0.20 2.44 8.55 -86.99 -0.74 1.70 16 22 S 0.03 0.26 24.35 -107.50 -2.62 -2.36 16 23 N -0.43 -5.54 3.12 -59.36 -0.19 -5.73 16 24 C 0.15 1.92 6.78 -82.33 -0.56 1.36 16 25 C -0.12 -1.23 9.20 36.01 0.33 -0.90 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 29 H 0.06 1.24 3.21 -51.93 -0.17 1.07 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.39 6.28 7.63 -40.82 -0.31 5.97 16 33 H 0.09 0.57 9.07 97.61 0.89 1.46 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.74 6.45 -51.93 -0.33 0.40 16 36 H 0.13 1.49 5.72 -51.93 -0.30 1.20 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -29.16 319.53 -7.80 -36.96 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -2.14 Total: 4.54 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.45 Total: -2.53 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 1.09 Total: -49.12 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.06 Total: -9.14 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.15 Total: 16.14 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -5.02 Total: -1.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.16 -7.80 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.107 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds