Wall clock time and date at job start Tue Mar 31 2020 04:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21662 * 120.00151 * 359.97438 * 14 13 3 16 16 C 1.46886 * 119.99510 * 179.97438 * 14 13 3 17 17 S 1.75782 * 125.16832 * 0.02562 * 16 14 13 18 18 C 1.76179 * 90.70836 * 179.97438 * 17 16 14 19 19 N 1.31937 * 141.94474 * 180.02562 * 18 17 16 20 20 N 1.39886 * 107.84798 * 179.97438 * 19 18 17 21 21 C 1.30697 * 108.10964 * 0.02562 * 20 19 18 22 22 S 1.76197 * 125.88968 * 180.02562 * 21 20 19 23 23 N 1.35944 * 109.49524 * 0.02562 * 18 17 16 24 24 C 1.32841 * 125.15808 * 179.71752 * 16 14 13 25 25 C 1.50700 * 121.90637 * 0.02562 * 24 16 14 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 33 33 H 1.34502 * 103.00321 * 270.00128 * 22 21 20 34 34 H 1.08999 * 109.47038 * 90.02475 * 25 24 16 35 35 H 1.08997 * 109.47574 * 210.02596 * 25 24 16 36 36 H 1.09004 * 109.47128 * 330.02738 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3420 2.6319 -0.4316 16 6 0.0468 3.3214 -2.6220 17 16 1.0582 3.4469 -4.0543 18 6 -0.2134 4.3232 -4.9022 19 7 -0.4882 4.8926 -6.0602 20 7 -1.7826 5.4174 -5.9835 21 6 -2.2567 5.1571 -4.7937 22 16 -3.8520 5.6072 -4.1962 23 7 -1.2895 4.4657 -4.0838 24 6 -1.1243 3.9060 -2.8489 25 6 -2.2069 3.9536 -1.8017 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 5.8770 0.4827 2.1133 32 1 2.2720 2.1231 -1.9978 33 1 -3.6405 6.8188 -3.6520 34 1 -2.0915 4.8554 -1.2005 35 1 -3.1825 3.9634 -2.2878 36 1 -2.1298 3.0763 -1.1593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585089541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:18 Heat of formation + Delta-G solvation = 72.524715 kcal Electronic energy + Delta-G solvation = -23084.517785 eV Core-core repulsion = 19630.537263 eV Total energy + Delta-G solvation = -3453.980522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 326.061 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.13806 -41.15509 -38.53687 -37.06033 -34.47409 -33.50194 -32.71929 -32.51572 -30.08350 -29.12935 -25.76154 -24.84965 -24.36822 -23.25492 -22.05296 -21.42676 -19.90511 -19.24475 -18.89156 -18.11021 -17.91393 -17.57458 -17.09352 -16.60253 -16.25854 -16.11470 -15.22039 -15.06716 -14.73343 -14.61950 -14.07227 -13.83774 -13.74997 -13.55872 -13.34817 -13.13247 -12.93160 -12.80286 -12.73444 -12.64000 -12.49372 -12.37385 -11.91799 -11.82368 -11.37399 -11.23610 -11.03748 -10.96312 -10.84580 -9.92086 -9.54602 -9.18900 -8.35623 -6.42697 -0.98258 -0.76170 -0.51425 0.12191 0.31926 0.50461 0.87644 1.32257 1.40129 1.48677 1.53007 1.91640 2.18005 2.28878 2.69425 3.00566 3.37764 3.51304 3.51938 3.84965 4.24016 4.27390 4.36619 4.48160 4.55006 4.63055 4.84841 4.98239 5.07204 5.14591 5.24498 5.26003 5.37564 5.55892 5.56316 6.08875 6.12012 6.55772 6.66665 7.05960 7.26474 8.79373 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.024320 B = 0.003466 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.060087 B = 8077.281029 C = 8841.605043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.253 3.747 4 H 0.039 0.961 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.261 1.261 11 H -0.298 1.298 12 H -0.249 1.249 13 N -0.690 5.690 14 C 0.595 3.405 15 O -0.534 6.534 16 C -0.263 4.263 17 S 0.285 5.715 18 C 0.150 3.850 19 N -0.309 5.309 20 N -0.248 5.248 21 C 0.202 3.798 22 S 0.059 5.941 23 N -0.431 5.431 24 C 0.171 3.829 25 C -0.118 4.118 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.270 0.730 32 H 0.400 0.600 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.105 5.827 -7.868 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.149 3.851 4 H 0.057 0.943 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.187 1.187 11 H -0.225 1.225 12 H -0.173 1.173 13 N -0.338 5.338 14 C 0.379 3.621 15 O -0.414 6.414 16 C -0.386 4.386 17 S 0.532 5.468 18 C -0.227 4.227 19 N -0.149 5.149 20 N -0.078 5.078 21 C -0.180 4.180 22 S 0.208 5.792 23 N -0.124 5.124 24 C 0.056 3.944 25 C -0.176 4.176 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.235 0.765 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.963 5.974 -8.910 20.922 hybrid contribution 0.571 0.388 1.661 1.798 sum -17.392 6.362 -7.249 19.888 Atomic orbital electron populations 1.21801 0.94686 1.00929 1.02002 1.22245 0.96337 0.98090 1.01279 1.18932 0.93375 0.89898 0.82892 0.94285 1.21265 0.90348 1.38923 1.07069 0.92697 1.25567 0.95722 0.95779 0.99933 1.69980 1.10499 1.45952 1.30829 0.86035 0.79650 0.79986 0.77993 1.18686 1.22550 1.17303 1.45898 1.14614 1.55640 1.17687 1.16502 0.82487 0.78232 0.84872 1.90753 1.51007 1.60719 1.38954 1.23359 0.99125 1.14118 1.02017 1.85193 1.06982 1.55522 0.99079 1.28518 0.95362 1.04743 0.94064 1.78393 1.05586 1.16542 1.14414 1.78104 1.01243 1.15134 1.13301 1.26593 0.97863 1.02011 0.91529 1.86157 0.93800 1.25432 1.73803 1.45603 1.12714 1.42102 1.12022 1.19706 0.97535 0.92254 0.84874 1.21433 0.94260 1.07154 0.94774 0.92351 0.92542 0.93436 0.93528 0.91426 0.92107 0.76459 0.93102 0.87846 0.87279 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 8.51 71.98 0.61 -3.85 16 2 C -0.14 -5.41 5.11 30.60 0.16 -5.25 16 3 C 0.25 10.64 1.83 44.25 0.08 10.72 16 4 H 0.04 1.79 6.64 -2.39 -0.02 1.77 16 5 C -0.54 -27.36 9.31 25.60 0.24 -27.12 16 6 H 0.05 3.01 7.98 -2.91 -0.02 2.99 16 7 C 0.03 1.60 5.45 84.66 0.46 2.06 16 8 N -0.93 -53.99 13.96 21.45 0.30 -53.69 16 9 Si 0.94 41.64 24.41 68.60 1.67 43.31 16 10 H -0.26 -10.97 6.83 99.48 0.68 -10.29 16 11 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.25 -10.56 6.53 99.48 0.65 -9.91 16 13 N -0.69 -23.85 5.02 -449.87 -2.26 -26.11 16 14 C 0.59 18.38 6.34 86.51 0.55 18.93 16 15 O -0.53 -17.91 11.04 -4.23 -0.05 -17.96 16 16 C -0.26 -6.68 6.32 23.36 0.15 -6.53 16 17 S 0.28 6.60 22.40 -56.49 -1.27 5.34 16 18 C 0.15 4.02 8.98 179.55 1.61 5.64 16 19 N -0.31 -9.40 12.76 -56.88 -0.73 -10.13 16 20 N -0.25 -6.98 12.69 -55.95 -0.71 -7.69 16 21 C 0.20 4.61 8.55 179.08 1.53 6.14 16 22 S 0.06 0.81 24.35 -56.49 -1.38 -0.57 16 23 N -0.43 -10.34 3.12 -341.72 -1.07 -11.41 16 24 C 0.17 3.89 6.78 40.64 0.28 4.16 16 25 C -0.12 -2.09 9.20 71.24 0.66 -1.44 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.76 5.64 -2.39 -0.01 1.75 16 28 H 0.05 1.62 7.84 -2.38 -0.02 1.60 16 29 H 0.05 1.90 3.21 -2.39 -0.01 1.89 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.40 12.66 7.63 -92.71 -0.71 11.95 16 33 H 0.10 1.03 9.07 73.35 0.67 1.69 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.45 6.45 -2.39 -0.02 1.44 16 36 H 0.12 2.44 5.72 -2.39 -0.01 2.42 16 Total: -1.00 -63.08 319.53 1.90 -61.18 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.06 Total: 14.26 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.32 Total: 3.46 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -4.46 Total: -109.03 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.05 Total: -17.96 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.67 Total: 43.31 kcal Atomic # 16 Polarization: 7.41 SS G_CDS: -2.64 Total: 4.77 kcal Total: -63.08 1.90 -61.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.706 kcal (2) G-P(sol) polarization free energy of solvation -63.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds