Wall clock time and date at job start Tue Mar 31 2020 04:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48502 * 109.47553 * 270.00266 * 3 2 1 5 5 H 1.48503 * 109.46838 * 29.99837 * 3 2 1 6 6 H 1.48496 * 109.47351 * 149.99495 * 3 2 1 7 7 C 1.38951 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99642 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00330 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21583 * 119.99929 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.39003 * 119.99882 * 180.27911 * 16 14 13 18 18 N 1.29408 * 124.93731 * 179.44393 * 17 16 14 19 19 C 1.32437 * 117.56822 * 179.82999 * 18 17 16 20 20 C 1.34661 * 113.31258 * 0.45932 * 19 18 17 21 21 S 1.70973 * 124.94003 * 359.74686 * 17 16 14 22 22 C 1.50956 * 124.26431 * 179.73210 * 20 19 18 23 23 O 1.43335 * 108.13862 * 345.39134 * 22 20 19 24 24 C 1.43025 * 113.80834 * 49.99153 * 23 22 20 25 25 C 1.52222 * 125.29822 * 180.23302 * 19 18 17 26 26 H 0.96997 * 120.00234 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 29 29 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 30 30 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 31 31 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 32 32 H 1.08995 * 109.72905 * 105.05645 * 22 20 19 33 33 H 1.08999 * 109.72732 * 225.68748 * 22 20 19 34 34 H 1.09001 * 109.43909 * 49.09037 * 24 23 22 35 35 H 1.09002 * 109.44674 * 169.02224 * 24 23 22 36 36 H 1.09001 * 109.75688 * 43.89108 * 25 19 18 37 37 H 1.08992 * 109.76257 * 283.13174 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3705 0.0000 13 7 6.0490 -3.7518 0.0006 14 6 7.3741 -3.9981 0.0002 15 8 8.1642 -3.0739 -0.0002 16 7 7.8233 -5.2688 0.0002 17 6 9.1900 -5.5227 0.0057 18 7 9.7247 -6.7011 0.0165 19 6 11.0471 -6.7741 0.0169 20 6 11.6474 -5.5687 0.0155 21 16 10.4088 -4.3237 0.0064 22 6 13.1430 -5.3640 0.0214 23 8 13.7622 -6.6083 0.3719 24 6 13.2922 -7.7225 -0.3919 25 6 11.8568 -8.0631 0.0237 26 1 -0.4850 0.8400 -0.0004 27 1 3.8648 -0.3633 0.0004 28 1 5.9240 -1.8566 0.8899 29 1 5.9240 -1.8568 -0.8901 30 1 5.4187 -4.4891 0.0006 31 1 7.1930 -6.0060 0.0010 32 1 13.4757 -5.0534 -0.9690 33 1 13.4071 -4.6015 0.7541 34 1 13.3129 -7.4701 -1.4521 35 1 13.9357 -8.5835 -0.2113 36 1 11.4268 -8.7720 -0.6838 37 1 11.8555 -8.4938 1.0248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588248599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:35 Heat of formation + Delta-G solvation = -50.324649 kcal Electronic energy + Delta-G solvation = -23937.346128 eV Core-core repulsion = 20035.285587 eV Total energy + Delta-G solvation = -3902.060542 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90335 -40.28070 -38.68246 -38.09465 -35.13250 -34.83775 -33.99195 -32.05005 -31.89334 -30.85939 -28.21994 -25.74106 -24.79944 -24.41869 -22.89698 -21.63559 -20.01084 -19.72662 -19.11205 -18.43778 -17.77835 -17.43388 -16.42311 -16.36209 -15.93331 -15.62492 -15.33874 -15.12736 -15.01929 -14.82739 -14.37167 -14.23516 -14.00492 -13.29437 -13.25351 -13.02952 -12.65140 -12.64516 -12.29028 -12.28461 -11.63402 -11.31707 -11.30428 -10.83700 -10.71568 -10.37433 -10.27731 -10.14213 -9.81020 -9.79368 -9.34566 -9.20304 -8.90923 -8.40191 -8.23786 -6.48861 -4.02189 0.56562 0.94757 1.67551 2.03417 2.35243 2.92368 2.95148 2.97893 3.06977 3.41956 3.43871 3.73458 3.96134 4.14013 4.39701 4.53101 4.59620 4.77457 4.90685 5.00305 5.05261 5.15920 5.26592 5.44693 5.47869 5.55360 5.59789 5.63490 5.70730 6.03328 6.17683 6.34042 6.65256 7.34466 7.44120 7.65556 7.89762 8.06707 8.34804 8.72535 9.19961 9.51590 10.62949 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.002101 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.637170 B =13322.897793 C =13954.886332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.579 6.579 12 C 0.123 3.877 13 N -0.705 5.705 14 C 0.706 3.294 15 O -0.564 6.564 16 N -0.636 5.636 17 C 0.273 3.727 18 N -0.521 5.521 19 C 0.102 3.898 20 C -0.353 4.353 21 S 0.277 5.723 22 C 0.151 3.849 23 O -0.374 6.374 24 C 0.062 3.938 25 C -0.073 4.073 26 H 0.277 0.723 27 H 0.375 0.625 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.415 0.585 31 H 0.422 0.578 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.398 -9.815 -1.117 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.441 4.441 8 H 0.140 0.860 9 N -0.209 5.209 10 C 0.220 3.780 11 O -0.464 6.464 12 C -0.005 4.005 13 N -0.361 5.361 14 C 0.404 3.596 15 O -0.442 6.442 16 N -0.288 5.288 17 C -0.095 4.095 18 N -0.244 5.244 19 C -0.031 4.031 20 C -0.475 4.475 21 S 0.528 5.472 22 C 0.072 3.928 23 O -0.292 6.292 24 C -0.015 4.015 25 C -0.112 4.112 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.254 0.746 31 H 0.261 0.739 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 25.039 -8.819 -0.973 26.564 hybrid contribution -0.278 -0.221 -0.162 0.391 sum 24.761 -9.039 -1.135 26.384 Atomic orbital electron populations 1.69609 1.05746 1.27967 1.47598 1.25082 0.95554 0.98253 0.96975 0.86664 0.79910 0.83685 0.79192 1.19319 1.19900 1.19189 1.19438 0.78829 0.96858 1.48937 0.86016 1.42094 1.07754 1.06067 1.64988 1.19518 0.87790 0.85019 0.85632 1.90555 1.69066 1.30847 1.55901 1.20975 0.94026 0.81571 1.03917 1.44640 1.04088 1.10481 1.76905 1.15654 0.83715 0.81615 0.78574 1.90851 1.54007 1.41700 1.57607 1.41767 1.03258 1.08777 1.75005 1.22830 0.90158 0.93691 1.02789 1.65698 1.12019 1.23459 1.23193 1.20109 0.86589 0.95310 1.01127 1.27232 1.03409 0.98946 1.17942 1.84867 0.90907 1.03808 1.67589 1.20932 0.83788 0.86850 1.01203 1.88078 1.62971 1.16010 1.62130 1.22639 0.93825 0.89759 0.95315 1.21043 0.93532 0.92754 1.03915 0.91260 0.79161 0.89174 0.89166 0.74617 0.73948 0.91294 0.87590 0.92476 0.87766 0.88902 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.24 13.96 55.50 0.77 -23.46 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.30 27.74 -169.99 -4.71 13.58 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.02 6.52 56.52 0.37 -4.65 16 7 C -0.31 -8.30 10.16 -14.93 -0.15 -8.45 16 8 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16 9 N -0.57 -12.58 5.09 -10.96 -0.06 -12.64 16 10 C 0.43 8.90 7.85 -10.98 -0.09 8.82 16 11 O -0.58 -13.83 15.24 5.55 0.08 -13.75 16 12 C 0.12 1.90 6.15 -5.19 -0.03 1.86 16 13 N -0.70 -9.96 5.53 -66.41 -0.37 -10.33 16 14 C 0.71 9.82 8.53 -86.92 -0.74 9.08 16 15 O -0.56 -8.87 13.81 5.29 0.07 -8.80 16 16 N -0.64 -7.73 5.41 -17.52 -0.09 -7.82 16 17 C 0.27 3.61 8.19 -87.52 -0.72 2.89 16 18 N -0.52 -6.92 10.56 -10.47 -0.11 -7.03 16 19 C 0.10 1.20 6.88 -82.84 -0.57 0.63 16 20 C -0.35 -3.88 6.49 -35.45 -0.23 -4.11 16 21 S 0.28 3.36 20.20 -107.50 -2.17 1.19 16 22 C 0.15 1.29 7.24 36.13 0.26 1.55 16 23 O -0.37 -3.47 10.79 -35.23 -0.38 -3.85 16 24 C 0.06 0.43 6.75 37.29 0.25 0.68 16 25 C -0.07 -0.61 6.57 -26.99 -0.18 -0.79 16 26 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.38 7.21 5.76 -40.82 -0.24 6.98 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.41 5.74 7.45 -40.82 -0.30 5.43 16 31 H 0.42 4.18 8.83 -40.82 -0.36 3.82 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -32.66 332.17 -8.08 -40.74 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -3.83 Total: 13.87 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: -2.29 Total: 13.28 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.15 Total: -61.28 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.22 Total: -26.39 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -4.71 Total: 13.58 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.17 Total: 1.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.66 -8.08 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588248599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.586 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds