Wall clock time and date at job start Tue Mar 31 2020 04:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86794 * 120.00295 * 2 1 4 4 H 1.48502 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47018 * 299.99891 * 3 2 1 6 6 H 1.48500 * 109.47208 * 59.99383 * 3 2 1 7 7 C 1.39027 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 160.79587 * 7 2 1 9 9 N 1.36904 * 120.00157 * 340.80466 * 7 2 1 10 10 C 1.34773 * 119.99868 * 132.81288 * 9 7 2 11 11 O 1.21630 * 119.99877 * 184.88005 * 10 9 7 12 12 C 1.47429 * 120.00352 * 4.87380 * 10 9 7 13 13 C 1.39761 * 120.19598 * 326.65814 * 12 10 9 14 14 C 1.37774 * 119.90016 * 180.02562 * 13 12 10 15 15 S 1.76201 * 119.84816 * 180.02562 * 14 13 12 16 16 N 1.65604 * 107.21651 * 269.97751 * 15 14 13 17 17 O 1.42102 * 106.40231 * 23.51627 * 15 14 13 18 18 O 1.42094 * 106.40543 * 156.44011 * 15 14 13 19 19 C 1.38561 * 120.30694 * 0.02562 * 14 13 12 20 20 C 1.38076 * 120.39857 * 359.97438 * 19 14 13 21 21 C 1.38681 * 120.09196 * 0.27736 * 20 19 14 22 22 O 1.35657 * 120.15078 * 179.70225 * 21 20 19 23 23 C 1.46498 * 119.99693 * 312.80548 * 9 7 2 24 24 C 1.52998 * 117.50230 * 1.86356 * 23 9 7 25 25 C 1.52998 * 117.50415 * 293.19907 * 23 9 7 26 26 H 0.97001 * 119.99438 * 5.05399 * 1 2 3 27 27 H 1.08003 * 120.05185 * 0.04259 * 13 12 10 28 28 H 0.97003 * 119.99570 * 149.99711 * 16 15 14 29 29 H 0.96998 * 120.00441 * 330.00100 * 16 15 14 30 30 H 1.08000 * 119.80116 * 180.02562 * 19 14 13 31 31 H 1.08001 * 119.95002 * 180.02562 * 20 19 14 32 32 H 0.96701 * 114.00085 * 90.00239 * 22 21 20 33 33 H 1.09010 * 115.54658 * 147.52840 * 23 9 7 34 34 H 1.09001 * 117.49791 * 359.97438 * 24 23 9 35 35 H 1.08998 * 117.49852 * 145.01715 * 24 23 9 36 36 H 1.08996 * 117.49908 * 214.98519 * 25 23 9 37 37 H 1.09001 * 117.49626 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 3.7079 1.3463 0.0006 5 1 1.8892 2.3963 -1.2126 6 1 1.8891 2.3964 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0438 -1.2302 -0.3071 9 7 1.3814 -2.3565 0.3909 10 6 1.4966 -3.4726 -0.3558 11 8 0.8687 -4.4708 -0.0582 12 6 2.3836 -3.4835 -1.5333 13 6 2.5536 -2.3248 -2.2961 14 6 3.3836 -2.3420 -3.3957 15 16 3.5974 -0.8802 -4.3560 16 7 2.4373 -0.8961 -5.5377 17 8 3.2844 0.2109 -3.5011 18 8 4.8471 -1.0146 -5.0187 19 6 4.0510 -3.5035 -3.7499 20 6 3.8922 -4.6553 -3.0052 21 6 3.0567 -4.6580 -1.8983 22 8 2.8952 -5.7906 -1.1693 23 6 0.5849 -2.3765 1.6202 24 6 0.4571 -1.0668 2.4007 25 6 1.3277 -2.2015 2.9463 26 1 -0.4849 0.8368 -0.0740 27 1 2.0353 -1.4172 -2.0239 28 1 2.0853 -0.0607 -5.8830 29 1 2.1098 -1.7406 -5.8847 30 1 4.6999 -3.5076 -4.6131 31 1 4.4162 -5.5565 -3.2875 32 1 3.5280 -5.8854 -0.4443 33 1 -0.2777 -3.0429 1.6107 34 1 0.9660 -0.1903 1.9997 35 1 -0.4893 -0.8717 2.9049 36 1 0.9537 -2.7524 3.8092 37 1 2.4092 -2.0718 2.9041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:18 Heat of formation + Delta-G solvation = -71.151381 kcal Electronic energy + Delta-G solvation = -26654.306832 eV Core-core repulsion = 22719.050424 eV Total energy + Delta-G solvation = -3935.256408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94869 -38.25410 -36.90453 -36.51939 -36.01249 -35.58331 -33.31159 -33.07978 -31.73845 -30.45734 -29.85079 -25.32182 -23.80081 -22.71377 -21.47367 -21.12904 -19.64791 -19.21851 -18.26858 -18.05591 -17.23883 -16.72013 -16.56859 -15.78287 -15.66456 -15.22229 -14.93062 -14.63750 -14.50982 -13.84808 -13.65952 -13.14570 -12.97341 -12.80825 -12.21692 -12.12385 -12.04566 -11.96523 -11.84000 -11.69737 -11.52599 -11.19854 -10.92678 -10.81614 -10.44615 -10.38992 -10.29899 -10.23676 -9.80447 -9.38509 -8.89702 -8.82349 -8.65293 -8.46168 -7.39672 -6.49897 -4.26972 0.59720 0.95309 1.45342 3.10969 3.18017 3.29405 3.31761 3.48811 3.87887 4.03932 4.10251 4.41984 4.44105 4.67262 4.76944 5.09066 5.15368 5.23552 5.63043 5.75275 5.89377 5.95409 6.05758 6.08541 6.09933 6.16340 6.32612 6.37347 6.44675 6.60620 6.81053 6.98780 7.02184 7.11293 7.26732 7.32356 7.85724 7.88687 8.20710 8.90267 9.31191 9.76679 10.49533 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.007130 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.284868 B = 3925.950532 C = 5856.933251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.066 3.934 3 Si 0.901 3.099 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.280 1.280 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.404 5.404 10 C 0.518 3.482 11 O -0.580 6.580 12 C -0.143 4.143 13 C 0.052 3.948 14 C -0.711 4.711 15 S 2.699 3.301 16 N -1.250 6.250 17 O -0.951 6.951 18 O -0.972 6.972 19 C -0.005 4.005 20 C -0.187 4.187 21 C 0.199 3.801 22 O -0.479 6.479 23 C 0.108 3.892 24 C -0.145 4.145 25 C -0.218 4.218 26 H 0.274 0.726 27 H 0.189 0.811 28 H 0.419 0.581 29 H 0.415 0.585 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.393 0.607 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 -2.098 -6.805 8.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.498 4.498 8 H 0.108 0.892 9 N -0.121 5.121 10 C 0.307 3.693 11 O -0.464 6.464 12 C -0.147 4.147 13 C 0.032 3.968 14 C -0.800 4.800 15 S 2.789 3.211 16 N -0.922 5.922 17 O -0.940 6.940 18 O -0.962 6.962 19 C -0.025 4.025 20 C -0.206 4.206 21 C 0.152 3.848 22 O -0.290 6.290 23 C 0.003 3.997 24 C -0.183 4.183 25 C -0.257 4.257 26 H 0.084 0.916 27 H 0.205 0.795 28 H 0.248 0.752 29 H 0.242 0.758 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.251 0.749 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.015 -1.873 -6.676 8.557 hybrid contribution 0.154 0.230 0.266 0.384 sum 5.170 -1.643 -6.409 8.397 Atomic orbital electron populations 1.70041 1.06209 1.28418 1.41999 1.25380 0.95137 0.99850 0.94065 0.86250 0.81010 0.81952 0.78192 1.18558 1.19271 1.20550 1.19346 0.96243 0.84769 1.49399 0.89187 1.42678 1.43452 1.08584 1.17374 1.17950 0.83998 0.84681 0.82647 1.90682 1.48620 1.35009 1.72108 1.20605 1.01784 0.93054 0.99287 1.22285 0.88591 0.99460 0.86443 1.30528 1.15168 1.19244 1.15043 1.01538 0.73064 0.73471 0.73059 1.53160 1.63164 1.16619 1.59289 1.93649 1.83806 1.50853 1.65741 1.93571 1.41200 1.86549 1.74860 1.20782 0.93898 0.90572 0.97248 1.21312 1.01922 0.99250 0.98153 1.18847 0.90686 0.84492 0.90734 1.84739 1.59516 1.37630 1.47103 1.21141 0.95943 1.00489 0.82149 1.23190 0.99650 0.94173 1.01253 1.23378 0.99075 1.05329 0.97875 0.91574 0.79452 0.75159 0.75803 0.84301 0.84684 0.74916 0.87648 0.86892 0.90546 0.90287 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.78 11.38 55.50 0.63 -20.15 16 2 C 0.07 1.60 2.82 -17.45 -0.05 1.55 16 3 Si 0.90 19.79 29.22 -169.99 -4.97 14.82 16 4 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.37 -8.99 5.48 -14.99 -0.08 -9.07 16 8 H 0.09 2.18 6.66 -52.49 -0.35 1.83 16 9 N -0.40 -9.89 2.76 -108.93 -0.30 -10.19 16 10 C 0.52 12.66 7.27 -12.52 -0.09 12.56 16 11 O -0.58 -15.39 15.64 -13.15 -0.21 -15.59 16 12 C -0.14 -3.00 5.54 -104.85 -0.58 -3.58 16 13 C 0.05 1.02 7.33 -39.18 -0.29 0.73 16 14 C -0.71 -11.50 5.97 -39.63 -0.24 -11.74 16 15 S 2.70 40.00 6.28 -107.50 -0.67 39.32 16 16 N -1.25 -12.87 9.52 60.35 0.57 -12.30 16 17 O -0.95 -17.89 17.26 -57.17 -0.99 -18.88 16 18 O -0.97 -15.81 17.27 -57.17 -0.99 -16.80 16 19 C -0.01 -0.07 9.51 -39.52 -0.38 -0.45 16 20 C -0.19 -2.72 9.98 -39.48 -0.39 -3.11 16 21 C 0.20 3.57 6.69 -38.68 -0.26 3.31 16 22 O -0.48 -8.25 12.08 -37.08 -0.45 -8.69 16 23 C 0.11 2.51 5.63 -67.93 -0.38 2.13 16 24 C -0.14 -3.11 8.21 -26.69 -0.22 -3.33 16 25 C -0.22 -4.36 10.38 -26.69 -0.28 -4.63 16 26 H 0.27 6.45 8.32 -40.82 -0.34 6.11 16 27 H 0.19 4.13 4.87 -52.48 -0.26 3.88 16 28 H 0.42 3.55 8.96 -34.47 -0.31 3.24 16 29 H 0.42 3.27 8.96 -34.48 -0.31 2.96 16 30 H 0.14 1.56 7.60 -52.49 -0.40 1.16 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.39 4.94 9.06 45.56 0.41 5.36 16 33 H 0.11 2.54 7.78 -51.92 -0.40 2.13 16 34 H 0.11 2.62 4.58 -51.93 -0.24 2.38 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 326.81 15.07 4.93 4.93 Total: -1.00 -33.81 326.81 -8.35 -42.16 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -2.68 Total: 17.02 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.23 Total: -15.63 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.91 Total: -42.64 kcal Atomic # 8 Polarization: -57.34 SS G_CDS: -2.63 Total: -59.97 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.97 Total: 14.82 kcal Atomic # 16 Polarization: 40.00 SS G_CDS: -0.67 Total: 39.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.81 -8.35 -42.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.996 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds