Wall clock time and date at job start Tue Mar 31 2020 04:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86794 * 120.00295 * 2 1 4 4 H 1.48502 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47018 * 299.99891 * 3 2 1 6 6 H 1.48500 * 109.47208 * 59.99383 * 3 2 1 7 7 C 1.39027 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 160.79587 * 7 2 1 9 9 N 1.36904 * 120.00157 * 340.80466 * 7 2 1 10 10 C 1.34773 * 119.99868 * 132.81288 * 9 7 2 11 11 O 1.21630 * 119.99877 * 184.88005 * 10 9 7 12 12 C 1.47429 * 120.00352 * 4.87380 * 10 9 7 13 13 C 1.39761 * 120.19598 * 326.65814 * 12 10 9 14 14 C 1.37774 * 119.90016 * 180.02562 * 13 12 10 15 15 S 1.76201 * 119.84816 * 180.02562 * 14 13 12 16 16 N 1.65604 * 107.21651 * 269.97751 * 15 14 13 17 17 O 1.42102 * 106.40231 * 23.51627 * 15 14 13 18 18 O 1.42094 * 106.40543 * 156.44011 * 15 14 13 19 19 C 1.38561 * 120.30694 * 0.02562 * 14 13 12 20 20 C 1.38076 * 120.39857 * 359.97438 * 19 14 13 21 21 C 1.38681 * 120.09196 * 0.27736 * 20 19 14 22 22 O 1.35657 * 120.15078 * 179.70225 * 21 20 19 23 23 C 1.46498 * 119.99693 * 312.80548 * 9 7 2 24 24 C 1.52998 * 117.50230 * 1.86356 * 23 9 7 25 25 C 1.52998 * 117.50415 * 293.19907 * 23 9 7 26 26 H 0.97001 * 119.99438 * 5.05399 * 1 2 3 27 27 H 1.08003 * 120.05185 * 0.04259 * 13 12 10 28 28 H 0.97003 * 119.99570 * 149.99711 * 16 15 14 29 29 H 0.96998 * 120.00441 * 330.00100 * 16 15 14 30 30 H 1.08000 * 119.80116 * 180.02562 * 19 14 13 31 31 H 1.08001 * 119.95002 * 180.02562 * 20 19 14 32 32 H 0.96701 * 114.00085 * 90.00239 * 22 21 20 33 33 H 1.09010 * 115.54658 * 147.52840 * 23 9 7 34 34 H 1.09001 * 117.49791 * 359.97438 * 24 23 9 35 35 H 1.08998 * 117.49852 * 145.01715 * 24 23 9 36 36 H 1.08996 * 117.49908 * 214.98519 * 25 23 9 37 37 H 1.09001 * 117.49626 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 3.7079 1.3463 0.0006 5 1 1.8892 2.3963 -1.2126 6 1 1.8891 2.3964 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0438 -1.2302 -0.3071 9 7 1.3814 -2.3565 0.3909 10 6 1.4966 -3.4726 -0.3558 11 8 0.8687 -4.4708 -0.0582 12 6 2.3836 -3.4835 -1.5333 13 6 2.5536 -2.3248 -2.2961 14 6 3.3836 -2.3420 -3.3957 15 16 3.5974 -0.8802 -4.3560 16 7 2.4373 -0.8961 -5.5377 17 8 3.2844 0.2109 -3.5011 18 8 4.8471 -1.0146 -5.0187 19 6 4.0510 -3.5035 -3.7499 20 6 3.8922 -4.6553 -3.0052 21 6 3.0567 -4.6580 -1.8983 22 8 2.8952 -5.7906 -1.1693 23 6 0.5849 -2.3765 1.6202 24 6 0.4571 -1.0668 2.4007 25 6 1.3277 -2.2015 2.9463 26 1 -0.4849 0.8368 -0.0740 27 1 2.0353 -1.4172 -2.0239 28 1 2.0853 -0.0607 -5.8830 29 1 2.1098 -1.7406 -5.8847 30 1 4.6999 -3.5076 -4.6131 31 1 4.4162 -5.5565 -3.2875 32 1 3.5280 -5.8854 -0.4443 33 1 -0.2777 -3.0429 1.6107 34 1 0.9660 -0.1903 1.9997 35 1 -0.4893 -0.8717 2.9049 36 1 0.9537 -2.7524 3.8092 37 1 2.4092 -2.0718 2.9041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:18 Heat of formation + Delta-G solvation = -98.907064 kcal Electronic energy + Delta-G solvation = -26655.510408 eV Core-core repulsion = 22719.050424 eV Total energy + Delta-G solvation = -3936.459984 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47569 -39.87258 -38.20142 -37.96381 -37.71057 -36.88579 -35.07938 -34.03557 -33.55640 -31.89676 -31.19400 -27.18345 -25.30290 -24.06515 -23.09109 -22.75160 -21.35774 -20.49929 -19.78122 -19.30439 -18.38725 -18.26909 -18.01761 -17.23340 -17.07323 -16.76556 -16.43078 -16.19263 -15.92076 -15.59298 -15.16421 -14.70886 -14.58090 -14.23048 -13.92503 -13.57763 -13.44676 -13.30256 -13.17835 -13.17402 -13.02777 -12.90175 -12.71937 -12.20727 -12.09052 -12.03608 -11.70964 -11.54036 -11.29307 -11.13649 -10.68008 -10.36265 -10.14792 -10.00793 -9.24268 -8.35315 -6.15524 -0.60809 -0.35195 0.08627 1.37749 1.48068 1.54924 1.79154 2.23802 2.26663 2.46433 2.72557 2.76520 2.92595 3.12738 3.37150 3.48923 3.91202 3.95572 4.18273 4.23381 4.34031 4.41638 4.47574 4.55142 4.83315 4.84769 4.97057 5.01060 5.07343 5.23978 5.29252 5.31599 5.42519 5.53863 5.68691 6.04452 6.34805 6.38650 6.69003 7.03851 7.46693 7.92905 8.65991 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.007130 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.284868 B = 3925.950532 C = 5856.933251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.045 3.955 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.369 4.369 8 H 0.086 0.914 9 N -0.412 5.412 10 C 0.506 3.494 11 O -0.615 6.615 12 C -0.182 4.182 13 C 0.036 3.964 14 C -0.709 4.709 15 S 2.725 3.275 16 N -1.232 6.232 17 O -0.994 6.994 18 O -0.981 6.981 19 C 0.012 3.988 20 C -0.171 4.171 21 C 0.198 3.802 22 O -0.492 6.492 23 C 0.073 3.927 24 C -0.140 4.140 25 C -0.188 4.188 26 H 0.276 0.724 27 H 0.159 0.841 28 H 0.430 0.570 29 H 0.430 0.570 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.411 0.589 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.976 -2.643 -8.170 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.104 0.896 9 N -0.129 5.129 10 C 0.297 3.703 11 O -0.503 6.503 12 C -0.186 4.186 13 C 0.017 3.983 14 C -0.797 4.797 15 S 2.813 3.187 16 N -0.911 5.911 17 O -0.983 6.983 18 O -0.970 6.970 19 C -0.007 4.007 20 C -0.190 4.190 21 C 0.151 3.849 22 O -0.306 6.306 23 C -0.032 4.032 24 C -0.178 4.178 25 C -0.226 4.226 26 H 0.086 0.914 27 H 0.176 0.824 28 H 0.262 0.738 29 H 0.260 0.740 30 H 0.198 0.802 31 H 0.195 0.805 32 H 0.271 0.729 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.797 -2.415 -8.022 10.788 hybrid contribution -0.374 0.305 0.578 0.753 sum 6.423 -2.110 -7.444 10.056 Atomic orbital electron populations 1.70094 1.07048 1.28935 1.43421 1.25759 0.95445 1.01341 0.93709 0.85676 0.79974 0.79788 0.78169 1.18850 1.20074 1.19216 1.19330 0.95969 0.84871 1.49441 0.89640 1.42856 1.43388 1.08762 1.17868 1.18570 0.84165 0.84147 0.83441 1.90623 1.50226 1.36002 1.73429 1.20531 1.03687 0.95233 0.99181 1.21866 0.90054 0.98127 0.88289 1.30652 1.14200 1.20721 1.14092 1.00659 0.73185 0.72173 0.72723 1.52723 1.62453 1.18127 1.57801 1.93598 1.84543 1.52747 1.67457 1.93561 1.42253 1.86433 1.74796 1.21324 0.92526 0.89301 0.97576 1.21700 1.00345 1.00906 0.96060 1.19063 0.90705 0.83471 0.91684 1.84682 1.60781 1.37108 1.47988 1.21237 0.96738 1.01782 0.83466 1.23114 1.00534 0.93206 1.00914 1.23393 0.98741 1.03739 0.96744 0.91381 0.82380 0.73761 0.74022 0.80197 0.80486 0.72877 0.89469 0.88421 0.89161 0.87317 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.08 11.38 21.68 0.25 -43.83 16 2 C 0.05 2.24 2.82 84.95 0.24 2.48 16 3 Si 0.94 40.97 29.22 68.60 2.00 42.98 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.37 -18.45 5.48 84.09 0.46 -17.99 16 8 H 0.09 4.28 6.66 -2.91 -0.02 4.26 16 9 N -0.41 -20.92 2.76 -616.81 -1.70 -22.62 16 10 C 0.51 25.67 7.27 86.66 0.63 26.30 16 11 O -0.62 -34.00 15.64 13.47 0.21 -33.79 16 12 C -0.18 -7.77 5.54 -20.01 -0.11 -7.88 16 13 C 0.04 1.45 7.33 22.53 0.17 1.62 16 14 C -0.71 -21.74 5.97 22.24 0.13 -21.61 16 15 S 2.72 76.16 6.28 -56.49 -0.35 75.80 16 16 N -1.23 -22.65 9.52 37.02 0.35 -22.30 16 17 O -0.99 -37.23 17.26 -128.00 -2.21 -39.44 16 18 O -0.98 -29.11 17.27 -128.00 -2.21 -31.32 16 19 C 0.01 0.29 9.51 22.31 0.21 0.50 16 20 C -0.17 -4.33 9.98 22.34 0.22 -4.11 16 21 C 0.20 6.84 6.69 22.85 0.15 6.99 16 22 O -0.49 -16.49 12.08 -72.13 -0.87 -17.36 16 23 C 0.07 3.48 5.63 44.99 0.25 3.73 16 24 C -0.14 -6.04 8.21 30.62 0.25 -5.79 16 25 C -0.19 -7.40 10.38 30.62 0.32 -7.08 16 26 H 0.28 13.33 8.32 -92.71 -0.77 12.56 16 27 H 0.16 7.27 4.87 -2.91 -0.01 7.25 16 28 H 0.43 6.41 8.96 -96.74 -0.87 5.54 16 29 H 0.43 5.54 8.96 -96.74 -0.87 4.67 16 30 H 0.18 2.99 7.60 -2.91 -0.02 2.97 16 31 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.41 9.97 9.06 -74.06 -0.67 9.30 16 33 H 0.09 4.40 7.78 -2.38 -0.02 4.39 16 34 H 0.10 4.56 4.58 -2.39 -0.01 4.55 16 35 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -75.50 326.81 -2.83 -78.33 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -1.22 Total: 36.38 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 2.93 Total: -22.83 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -1.10 Total: -88.75 kcal Atomic # 8 Polarization: -116.82 SS G_CDS: -5.08 Total: -121.90 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.00 Total: 42.98 kcal Atomic # 16 Polarization: 76.16 SS G_CDS: -0.35 Total: 75.80 kcal Total: -75.50 -2.83 -78.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.579 kcal (2) G-P(sol) polarization free energy of solvation -75.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds