Wall clock time and date at job start Tue Mar 31 2020 05:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42099 * 110.53947 * 2 1 4 4 O 1.42093 * 110.54060 * 223.24778 * 2 1 3 5 5 N 1.65599 * 104.44777 * 111.62138 * 2 1 3 6 6 C 1.46496 * 119.99854 * 65.00074 * 5 2 1 7 7 C 1.53499 * 114.20603 * 144.99742 * 6 5 2 8 8 N 1.47070 * 87.98333 * 87.52146 * 7 6 5 9 9 S 1.65606 * 136.05582 * 207.08646 * 8 7 6 10 10 O 1.42094 * 104.27817 * 333.92752 * 9 8 7 11 11 O 1.42106 * 104.27580 * 206.06984 * 9 8 7 12 12 C 1.81396 * 104.45103 * 89.99969 * 9 8 7 13 13 C 1.52997 * 109.47360 * 179.97438 * 12 9 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 9 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99711 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00219 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46794 * 90.00022 * 19 17 15 21 21 H 1.48502 * 109.47140 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.46982 * 330.00118 * 19 17 15 23 23 C 1.47062 * 87.88577 * 27.34370 * 8 7 6 24 24 H 1.09003 * 109.47098 * 308.37924 * 1 2 3 25 25 H 1.09002 * 109.46856 * 68.37553 * 1 2 3 26 26 H 1.08990 * 109.47090 * 188.37732 * 1 2 3 27 27 H 0.97000 * 120.00013 * 245.00535 * 5 2 1 28 28 H 1.08998 * 113.28412 * 11.93498 * 6 5 2 29 29 H 1.08995 * 113.46816 * 332.74773 * 7 6 5 30 30 H 1.09001 * 113.46737 * 202.29870 * 7 6 5 31 31 H 1.09002 * 109.47134 * 59.99751 * 12 9 8 32 32 H 1.08998 * 109.46953 * 300.00489 * 12 9 8 33 33 H 1.09002 * 109.47153 * 59.99820 * 13 12 9 34 34 H 1.09001 * 109.46832 * 300.00011 * 13 12 9 35 35 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 36 36 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 37 37 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 38 38 H 1.08992 * 113.47147 * 87.43996 * 23 8 7 39 39 H 1.09008 * 113.46615 * 217.87736 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.8908 -1.9705 1.8508 7 6 2.9335 -2.6608 2.7410 8 7 2.2324 -2.1015 3.9066 9 16 2.6445 -1.6681 5.4510 10 8 3.7722 -2.4780 5.7532 11 8 1.4342 -1.7941 6.1850 12 6 3.1297 0.0746 5.3179 13 6 3.5367 0.5975 6.6969 14 6 3.9454 2.0677 6.5847 15 6 4.3469 2.5825 7.9430 16 1 4.3135 1.9268 8.8005 17 6 4.7569 3.8905 8.0909 18 7 5.1068 4.3399 9.2763 19 14 4.8154 5.0244 6.6075 20 1 3.5077 5.7120 6.4582 21 1 5.8870 6.0347 6.7986 22 1 5.0981 4.2279 5.3864 23 6 1.0032 -2.1026 3.0994 24 1 -0.3633 0.6381 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0166 0.1497 27 1 2.6920 -0.0235 2.1256 28 1 1.5614 -2.5693 1.0017 29 1 3.9422 -2.2686 2.6120 30 1 2.8941 -3.7490 2.6918 31 1 2.2893 0.6581 4.9420 32 1 3.9713 0.1660 4.6313 33 1 4.3770 0.0141 7.0733 34 1 2.6947 0.5062 7.3831 35 1 4.7873 2.1594 5.8984 36 1 3.1049 2.6508 6.2086 37 1 5.3956 5.2601 9.3802 38 1 0.4549 -3.0435 3.1446 39 1 0.3674 -1.2348 3.2756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599420708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:31 Heat of formation + Delta-G solvation = -105.957672 kcal Electronic energy + Delta-G solvation = -24111.457377 eV Core-core repulsion = 20310.135606 eV Total energy + Delta-G solvation = -3801.321770 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.085 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11146 -37.48986 -37.02479 -36.35981 -35.89672 -34.87342 -33.82157 -32.24400 -29.96123 -28.49757 -28.01094 -26.45442 -23.64748 -21.74156 -20.43545 -20.10763 -18.91603 -18.24755 -17.64338 -16.97427 -16.81847 -16.56557 -16.27238 -16.14411 -15.52380 -14.89743 -14.83173 -14.21573 -14.15344 -13.77935 -13.68654 -13.44746 -13.25977 -12.95130 -12.51149 -12.45739 -12.39885 -12.39181 -12.21851 -12.03245 -11.97785 -11.82950 -11.65579 -11.45292 -11.33047 -11.03394 -10.97192 -10.13776 -9.99588 -9.91253 -9.81009 -9.35230 -9.24919 -8.60562 -6.10325 -4.10038 -0.20102 0.19718 2.17852 2.52807 3.26140 3.34469 3.35270 3.36504 3.68595 3.79208 3.85884 4.05289 4.12076 4.24160 4.39094 4.40542 4.58302 4.71917 4.85059 4.92185 5.07305 5.10846 5.18572 5.21727 5.23360 5.60903 5.62158 5.69195 6.01102 6.08961 6.19549 6.46235 6.61754 7.08774 7.22854 7.68542 8.45079 8.93651 9.50691 11.02876 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.003910 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.198084 B = 7159.805500 C = 9029.660146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.615 3.385 3 O -0.953 6.953 4 O -0.954 6.954 5 N -1.099 6.099 6 C 0.105 3.895 7 C 0.125 3.875 8 N -1.050 6.050 9 S 2.622 3.378 10 O -0.953 6.953 11 O -0.954 6.954 12 C -0.614 4.614 13 C -0.097 4.097 14 C -0.004 4.004 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.111 3.889 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.422 0.578 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.021 0.979 36 H 0.016 0.984 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 -14.101 -21.775 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.706 3.294 3 O -0.943 6.943 4 O -0.944 6.944 5 N -0.856 5.856 6 C -0.006 4.006 7 C -0.003 4.003 8 N -0.887 5.887 9 S 2.721 3.279 10 O -0.944 6.944 11 O -0.945 6.945 12 C -0.746 4.746 13 C -0.137 4.137 14 C -0.043 4.043 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.017 4.017 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.257 0.743 28 H 0.144 0.856 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.255 -14.320 -21.515 28.189 hybrid contribution -0.326 1.466 -0.283 1.528 sum -11.581 -12.854 -21.798 27.830 Atomic orbital electron populations 1.30554 1.28090 1.11802 1.11842 1.04813 0.77626 0.73928 0.73016 1.93667 1.77877 1.37395 1.85343 1.93630 1.77023 1.61896 1.61875 1.55426 1.73439 1.20066 1.36680 1.22287 0.97676 0.82943 0.97711 1.22803 0.97473 0.99296 0.80714 1.60315 1.19889 1.78677 1.29859 1.04793 0.74239 0.77835 0.71054 1.93577 1.53590 1.65771 1.81417 1.93574 1.46075 1.86607 1.68227 1.30653 1.11842 1.22871 1.09190 1.21322 1.01668 1.01103 0.89575 1.19532 0.96316 0.90026 0.98405 1.21119 1.44869 0.97140 0.93507 0.90750 1.25021 0.94539 0.98024 0.95753 1.69909 1.44986 1.16470 1.22459 0.86786 0.78043 0.80763 0.83732 1.20212 1.21222 1.18968 1.23091 0.88211 1.03264 0.87119 0.84971 0.85291 0.85221 0.74284 0.85633 0.89449 0.88258 0.85372 0.85312 0.90934 0.90992 0.96092 0.96575 0.92589 0.88414 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.65 10.89 101.05 1.10 -0.55 16 2 S 2.61 15.98 6.07 -107.50 -0.65 15.33 16 3 O -0.95 -10.28 18.08 -57.54 -1.04 -11.32 16 4 O -0.95 -8.73 17.61 -57.54 -1.01 -9.74 16 5 N -1.10 -6.00 5.72 -4.61 -0.03 -6.03 16 6 C 0.10 0.46 4.66 -67.68 -0.32 0.14 16 7 C 0.12 0.79 8.49 -8.50 -0.07 0.71 16 8 N -1.05 -9.32 4.10 -125.04 -0.51 -9.83 16 9 S 2.62 35.33 5.96 -107.50 -0.64 34.69 16 10 O -0.95 -15.94 18.07 -57.54 -1.04 -16.98 16 11 O -0.95 -15.69 18.07 -57.54 -1.04 -16.73 16 12 C -0.61 -8.31 6.18 37.16 0.23 -8.08 16 13 C -0.10 -1.84 5.16 -26.73 -0.14 -1.98 16 14 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 15 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 23 C 0.11 0.59 8.52 -8.37 -0.07 0.51 16 24 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 25 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 26 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.42 2.41 8.91 -34.47 -0.31 2.10 16 28 H 0.13 0.20 7.81 -51.93 -0.41 -0.21 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.43 8.14 -51.92 -0.42 1.01 16 32 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 36 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -42.43 356.27 -10.02 -52.44 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.72 Total: -4.27 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 0.19 Total: -22.85 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.23 Total: -42.74 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -4.13 Total: -54.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 51.31 SS G_CDS: -1.29 Total: 50.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -42.43 -10.02 -52.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599420708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.514 kcal (2) G-P(sol) polarization free energy of solvation -42.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds