Wall clock time and date at job start Tue Mar 31 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42099 * 110.53947 * 2 1 4 4 O 1.42093 * 110.54060 * 223.24778 * 2 1 3 5 5 N 1.65599 * 104.44777 * 111.62138 * 2 1 3 6 6 C 1.46496 * 119.99854 * 65.00074 * 5 2 1 7 7 C 1.53499 * 114.20603 * 144.99742 * 6 5 2 8 8 N 1.47070 * 87.98333 * 87.52146 * 7 6 5 9 9 S 1.65606 * 136.05582 * 207.08646 * 8 7 6 10 10 O 1.42094 * 104.27817 * 333.92752 * 9 8 7 11 11 O 1.42106 * 104.27580 * 206.06984 * 9 8 7 12 12 C 1.81396 * 104.45103 * 89.99969 * 9 8 7 13 13 C 1.52997 * 109.47360 * 179.97438 * 12 9 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 9 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99711 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00219 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46794 * 90.00022 * 19 17 15 21 21 H 1.48502 * 109.47140 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.46982 * 330.00118 * 19 17 15 23 23 C 1.47062 * 87.88577 * 27.34370 * 8 7 6 24 24 H 1.09003 * 109.47098 * 308.37924 * 1 2 3 25 25 H 1.09002 * 109.46856 * 68.37553 * 1 2 3 26 26 H 1.08990 * 109.47090 * 188.37732 * 1 2 3 27 27 H 0.97000 * 120.00013 * 245.00535 * 5 2 1 28 28 H 1.08998 * 113.28412 * 11.93498 * 6 5 2 29 29 H 1.08995 * 113.46816 * 332.74773 * 7 6 5 30 30 H 1.09001 * 113.46737 * 202.29870 * 7 6 5 31 31 H 1.09002 * 109.47134 * 59.99751 * 12 9 8 32 32 H 1.08998 * 109.46953 * 300.00489 * 12 9 8 33 33 H 1.09002 * 109.47153 * 59.99820 * 13 12 9 34 34 H 1.09001 * 109.46832 * 300.00011 * 13 12 9 35 35 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 36 36 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 37 37 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 38 38 H 1.08992 * 113.47147 * 87.43996 * 23 8 7 39 39 H 1.09008 * 113.46615 * 217.87736 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.8908 -1.9705 1.8508 7 6 2.9335 -2.6608 2.7410 8 7 2.2324 -2.1015 3.9066 9 16 2.6445 -1.6681 5.4510 10 8 3.7722 -2.4780 5.7532 11 8 1.4342 -1.7941 6.1850 12 6 3.1297 0.0746 5.3179 13 6 3.5367 0.5975 6.6969 14 6 3.9454 2.0677 6.5847 15 6 4.3469 2.5825 7.9430 16 1 4.3135 1.9268 8.8005 17 6 4.7569 3.8905 8.0909 18 7 5.1068 4.3399 9.2763 19 14 4.8154 5.0244 6.6075 20 1 3.5077 5.7120 6.4582 21 1 5.8870 6.0347 6.7986 22 1 5.0981 4.2279 5.3864 23 6 1.0032 -2.1026 3.0994 24 1 -0.3633 0.6381 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0166 0.1497 27 1 2.6920 -0.0235 2.1256 28 1 1.5614 -2.5693 1.0017 29 1 3.9422 -2.2686 2.6120 30 1 2.8941 -3.7490 2.6918 31 1 2.2893 0.6581 4.9420 32 1 3.9713 0.1660 4.6313 33 1 4.3770 0.0141 7.0733 34 1 2.6947 0.5062 7.3831 35 1 4.7873 2.1594 5.8984 36 1 3.1049 2.6508 6.2086 37 1 5.3956 5.2601 9.3802 38 1 0.4549 -3.0435 3.1446 39 1 0.3674 -1.2348 3.2756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599420708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:30 Heat of formation + Delta-G solvation = -144.532694 kcal Electronic energy + Delta-G solvation = -24113.130115 eV Core-core repulsion = 20310.135606 eV Total energy + Delta-G solvation = -3802.994509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.085 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57504 -38.19415 -38.06836 -37.07094 -36.93113 -36.53558 -34.32336 -34.21844 -30.19661 -30.16236 -28.65243 -26.87008 -25.38230 -22.50578 -21.90985 -20.54520 -19.75277 -19.03701 -18.77743 -18.39232 -17.39665 -17.33713 -17.18203 -16.96581 -16.30242 -16.04665 -16.01407 -15.40702 -15.01830 -14.87324 -14.18879 -14.08103 -13.96996 -13.83984 -13.69939 -13.65936 -13.26114 -13.25143 -13.18367 -13.12540 -13.05373 -12.95254 -12.72472 -12.58824 -12.28214 -11.98347 -11.87544 -11.82153 -11.67768 -11.43812 -11.26499 -10.79704 -10.35901 -10.02838 -8.32288 -6.38182 -0.83646 -0.59517 1.35071 1.37590 1.48918 1.67706 1.80313 2.33920 2.82222 2.96418 3.01803 3.03124 3.32827 3.51496 3.56823 3.79722 3.84726 4.05885 4.24840 4.29139 4.35076 4.40858 4.52392 4.72637 4.76562 4.79826 4.80954 4.92170 5.01061 5.08051 5.27979 5.31757 5.42956 5.52245 5.60292 6.06503 6.22720 6.70088 7.26634 8.84717 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.003910 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.198084 B = 7159.805500 C = 9029.660146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.622 3.378 3 O -1.007 7.007 4 O -0.992 6.992 5 N -1.102 6.102 6 C 0.116 3.884 7 C 0.111 3.889 8 N -1.054 6.054 9 S 2.644 3.356 10 O -0.994 6.994 11 O -0.989 6.989 12 C -0.611 4.611 13 C -0.103 4.103 14 C -0.005 4.005 15 C -0.545 4.545 16 H 0.030 0.970 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.953 3.047 20 H -0.263 1.263 21 H -0.285 1.285 22 H -0.241 1.241 23 C 0.105 3.895 24 H 0.146 0.854 25 H 0.141 0.859 26 H 0.160 0.840 27 H 0.420 0.580 28 H 0.162 0.838 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.122 0.878 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 -14.550 -25.266 32.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.719 3.281 3 O -0.998 6.998 4 O -0.982 6.982 5 N -0.859 5.859 6 C 0.005 3.995 7 C -0.015 4.015 8 N -0.896 5.896 9 S 2.743 3.257 10 O -0.985 6.985 11 O -0.980 6.980 12 C -0.742 4.742 13 C -0.142 4.142 14 C -0.044 4.044 15 C -0.583 4.583 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.775 3.225 20 H -0.188 1.188 21 H -0.211 1.211 22 H -0.164 1.164 23 C -0.022 4.022 24 H 0.164 0.836 25 H 0.159 0.841 26 H 0.178 0.822 27 H 0.255 0.745 28 H 0.180 0.820 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.307 -14.791 -25.004 31.954 hybrid contribution 0.247 1.500 0.826 1.730 sum -13.060 -13.291 -24.177 30.525 Atomic orbital electron populations 1.30360 1.22636 1.14317 1.13227 1.04324 0.79307 0.72128 0.72382 1.93595 1.80252 1.39902 1.86031 1.93579 1.79152 1.62316 1.63154 1.55328 1.73846 1.20649 1.36058 1.22402 0.96260 0.82398 0.98405 1.23198 0.97876 1.00725 0.79717 1.59924 1.22398 1.78448 1.28782 1.03704 0.72839 0.77304 0.71845 1.93520 1.55128 1.66807 1.83016 1.93522 1.47134 1.86950 1.70367 1.30582 1.13965 1.23503 1.06154 1.21162 1.01101 0.98916 0.93033 1.19506 0.97062 0.92541 0.95258 1.21555 1.44754 0.96963 0.94989 0.95163 1.26077 0.94014 1.00018 0.99243 1.70078 1.46604 1.17190 1.25313 0.85629 0.78559 0.78317 0.79988 1.18793 1.21122 1.16415 1.23525 0.87424 1.05240 0.85977 0.83599 0.84076 0.82200 0.74487 0.82048 0.89904 0.86318 0.82442 0.83031 0.92158 0.91839 0.95134 0.94953 0.92395 0.86060 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.21 10.89 113.37 1.23 1.02 16 2 S 2.62 25.90 6.07 -56.49 -0.34 25.55 16 3 O -1.01 -20.72 18.08 -127.65 -2.31 -23.03 16 4 O -0.99 -16.27 17.61 -127.65 -2.25 -18.51 16 5 N -1.10 -8.70 5.72 -168.50 -0.96 -9.67 16 6 C 0.12 0.55 4.66 45.55 0.21 0.76 16 7 C 0.11 1.08 8.49 83.18 0.71 1.79 16 8 N -1.05 -15.96 4.10 -549.50 -2.25 -18.22 16 9 S 2.64 68.67 5.96 -56.49 -0.34 68.33 16 10 O -0.99 -33.35 18.07 -127.65 -2.31 -35.66 16 11 O -0.99 -31.90 18.07 -127.65 -2.31 -34.21 16 12 C -0.61 -15.44 6.18 71.98 0.44 -15.00 16 13 C -0.10 -3.90 5.16 30.59 0.16 -3.75 16 14 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 15 C -0.54 -31.71 9.66 25.60 0.25 -31.46 16 16 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 17 C 0.00 0.20 5.47 84.66 0.46 0.66 16 18 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 19 Si 0.95 43.73 27.47 68.60 1.88 45.61 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 23 C 0.10 0.67 8.52 83.27 0.71 1.38 16 24 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.16 -0.83 8.14 -2.40 -0.02 -0.85 16 27 H 0.42 3.72 8.91 -96.75 -0.86 2.86 16 28 H 0.16 -0.32 7.81 -2.39 -0.02 -0.34 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.16 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.15 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 36 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -96.60 356.27 -6.44 -103.05 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 0.14 Total: 1.49 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 4.30 Total: -44.71 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.92 Total: -87.92 kcal Atomic # 8 Polarization: -102.24 SS G_CDS: -9.17 Total: -111.41 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Atomic # 16 Polarization: 94.57 SS G_CDS: -0.68 Total: 93.89 kcal Total: -96.60 -6.44 -103.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599420708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.486 kcal (2) G-P(sol) polarization free energy of solvation -96.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds