Wall clock time and date at job start Tue Mar 31 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48498 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47278 * 300.00510 * 3 2 1 6 6 H 1.48507 * 109.46754 * 60.00341 * 3 2 1 7 7 C 1.37882 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99327 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47114 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99741 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00093 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99865 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.47110 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47116 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.00109 * 269.72529 * 16 15 14 18 18 C 1.38238 * 119.99754 * 179.76611 * 17 16 15 19 19 C 1.38234 * 120.00038 * 0.48818 * 18 17 16 20 20 S 1.76199 * 120.00356 * 179.76975 * 19 18 17 21 21 N 1.65603 * 107.21663 * 270.02171 * 20 19 18 22 22 O 1.42100 * 106.39750 * 23.55962 * 20 19 18 23 23 O 1.42096 * 106.40667 * 156.48208 * 20 19 18 24 24 C 1.38238 * 120.00047 * 359.78460 * 19 18 17 25 25 C 1.38235 * 120.00108 * 359.96171 * 24 19 18 26 26 H 0.96995 * 120.00177 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46559 * 60.00446 * 9 7 2 28 28 H 1.08991 * 109.47398 * 300.00496 * 9 7 2 29 29 H 1.09000 * 109.47214 * 59.99838 * 10 9 7 30 30 H 1.09000 * 109.46955 * 300.00054 * 10 9 7 31 31 H 0.96998 * 120.00681 * 359.97438 * 11 10 9 32 32 H 1.09000 * 109.47543 * 59.99570 * 14 12 11 33 33 H 1.09008 * 109.47338 * 300.00084 * 14 12 11 34 34 H 1.09000 * 109.46884 * 60.00335 * 15 14 12 35 35 H 1.09000 * 109.46955 * 299.99651 * 15 14 12 36 36 H 1.08004 * 119.99934 * 0.02562 * 17 16 15 37 37 H 1.07999 * 119.99931 * 180.25459 * 18 17 16 38 38 H 0.96997 * 119.99935 * 359.97438 * 21 20 19 39 39 H 0.96997 * 119.99724 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.00559 * 179.97438 * 24 19 18 41 41 H 1.07999 * 120.00165 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.3994 -6.0981 -0.0003 14 6 1.4331 -7.4031 -0.0008 15 6 2.4273 -8.5660 -0.0009 16 6 1.6738 -9.8712 -0.0003 17 6 1.3336 -10.4724 1.1970 18 6 0.6382 -11.6671 1.1975 19 6 0.2918 -12.2657 0.0006 20 16 -0.5893 -13.7915 0.0011 21 7 0.5354 -15.0070 0.0010 22 8 -1.2610 -13.8665 1.2511 23 8 -1.2618 -13.8671 -1.2483 24 6 0.6369 -11.6673 -1.1968 25 6 1.3277 -10.4700 -1.1973 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8895 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.5427 -4.9309 -0.0011 32 1 0.8067 -7.4610 -0.8909 33 1 0.8061 -7.4607 0.8890 34 1 3.0540 -8.5084 0.8891 35 1 3.0539 -8.5082 -0.8910 36 1 1.6075 -10.0065 2.1322 37 1 0.3688 -12.1347 2.1330 38 1 1.4814 -14.7924 0.0003 39 1 0.2482 -15.9335 0.0016 40 1 0.3667 -12.1351 -2.1320 41 1 1.5977 -10.0027 -2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612063823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:38 Heat of formation + Delta-G solvation = -110.754656 kcal Electronic energy + Delta-G solvation = -23658.870529 eV Core-core repulsion = 19857.729889 eV Total energy + Delta-G solvation = -3801.140640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05417 -39.18125 -37.52813 -36.21587 -35.09477 -34.35426 -33.64971 -32.88968 -31.51831 -30.68619 -29.37215 -25.79402 -24.24871 -23.34550 -21.90899 -20.97111 -20.02854 -19.96249 -18.86492 -17.80504 -17.16291 -16.57762 -16.54598 -16.34392 -15.69690 -15.50856 -15.20059 -15.11870 -14.66492 -14.47032 -14.06094 -13.76985 -13.72556 -13.19695 -12.69189 -12.61374 -12.49225 -12.47436 -12.36009 -12.26801 -12.10521 -11.78683 -11.24563 -11.18613 -11.13864 -11.07561 -10.97054 -10.66192 -10.38808 -9.90100 -9.68686 -9.49972 -9.46633 -9.20381 -8.60359 -8.40909 -6.13182 -4.16220 -0.05300 0.32813 0.85364 2.65092 2.91129 2.96632 3.25628 3.30543 3.33337 3.37919 3.61242 4.04268 4.34573 4.39925 4.42165 4.44129 4.79030 4.85807 4.87861 5.06000 5.12300 5.23987 5.25808 5.42997 5.45304 5.49622 5.60250 5.63918 5.72528 5.88540 6.11586 6.28273 6.28944 6.38205 6.51657 6.68062 6.84788 7.46936 7.56596 7.84719 7.93767 8.23138 8.56629 8.90021 9.48938 10.98419 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.035614 B = 0.001649 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.021247 B =16975.032214 C =17274.673264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.121 3.879 11 N -0.722 5.722 12 C 0.504 3.496 13 O -0.553 6.553 14 C -0.137 4.137 15 C -0.076 4.076 16 C -0.015 4.015 17 C -0.138 4.138 18 C -0.016 4.016 19 C -0.684 4.684 20 S 2.703 3.297 21 N -1.251 6.251 22 O -0.965 6.965 23 O -0.965 6.965 24 C -0.016 4.016 25 C -0.138 4.138 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.398 0.602 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.417 0.583 39 H 0.420 0.580 40 H 0.143 0.857 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -30.850 0.001 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.290 3.710 13 O -0.432 6.432 14 C -0.177 4.177 15 C -0.113 4.113 16 C -0.015 4.015 17 C -0.157 4.157 18 C -0.036 4.036 19 C -0.772 4.772 20 S 2.792 3.208 21 N -0.926 5.926 22 O -0.954 6.954 23 O -0.954 6.954 24 C -0.036 4.036 25 C -0.157 4.157 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.244 0.756 39 H 0.250 0.750 40 H 0.160 0.840 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.571 -30.658 0.000 30.663 hybrid contribution 0.741 1.202 0.000 1.412 sum 1.312 -29.457 0.000 29.486 Atomic orbital electron populations 1.69960 1.06098 1.26823 1.50363 1.25008 0.94904 0.99465 0.94957 0.86450 0.80140 0.83287 0.77643 1.19589 1.20916 1.20911 1.21087 0.93277 0.90376 1.51350 0.92198 1.19334 0.94212 0.91177 0.97866 1.21730 0.96061 0.81571 1.00773 1.46366 1.10616 1.06653 1.73546 1.20495 0.88230 0.85585 0.76697 1.90679 1.14038 1.87886 1.50580 1.21643 0.99065 0.92176 1.04824 1.20520 0.96689 0.88679 1.05433 1.20424 0.92775 0.95089 0.93248 1.21287 0.99945 0.96022 0.98425 1.20971 0.91671 0.94397 0.96510 1.30441 1.22798 1.24152 0.99832 1.01470 0.72497 0.72823 0.73998 1.53069 1.22096 1.22022 1.95384 1.93608 1.71284 1.86085 1.44423 1.93607 1.71248 1.86081 1.44464 1.20973 0.91696 0.94389 0.96503 1.21287 0.99962 0.95995 0.98433 0.92861 0.95925 0.95932 0.92560 0.92567 0.76804 0.88755 0.88751 0.89387 0.89379 0.84594 0.83974 0.75618 0.75018 0.83974 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 11 N -0.72 -11.87 5.56 -60.30 -0.33 -12.20 16 12 C 0.50 7.71 7.83 -10.98 -0.09 7.62 16 13 O -0.55 -10.52 15.98 5.56 0.09 -10.43 16 14 C -0.14 -1.39 5.68 -27.89 -0.16 -1.55 16 15 C -0.08 -0.71 4.64 -27.88 -0.13 -0.83 16 16 C -0.01 -0.12 5.13 -104.62 -0.54 -0.66 16 17 C -0.14 -1.05 9.70 -39.58 -0.38 -1.44 16 18 C -0.02 -0.12 9.52 -39.58 -0.38 -0.50 16 19 C -0.68 -5.08 5.94 -39.58 -0.24 -5.31 16 20 S 2.70 19.50 6.28 -107.50 -0.68 18.82 16 21 N -1.25 -4.06 9.55 60.35 0.58 -3.49 16 22 O -0.96 -10.09 17.28 -57.17 -0.99 -11.08 16 23 O -0.96 -10.09 17.28 -57.17 -0.99 -11.08 16 24 C -0.02 -0.12 9.52 -39.58 -0.38 -0.50 16 25 C -0.14 -1.05 9.70 -39.58 -0.38 -1.44 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 5.62 8.47 -40.82 -0.35 5.27 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.14 0.85 7.62 -52.49 -0.40 0.45 16 38 H 0.42 0.44 8.92 -34.47 -0.31 0.14 16 39 H 0.42 0.74 8.96 -34.47 -0.31 0.43 16 40 H 0.14 0.85 7.62 -52.49 -0.40 0.45 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -37.36 367.71 -9.83 -47.19 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.52 Total: 0.81 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.24 Total: -15.11 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.98 Total: -40.85 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.89 Total: -32.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 19.50 SS G_CDS: -0.68 Total: 18.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.36 -9.83 -47.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612063823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.565 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds