Wall clock time and date at job start Tue Mar 31 2020 04:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48498 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47315 * 299.99825 * 3 2 1 6 6 H 1.48497 * 109.47361 * 59.99992 * 3 2 1 7 7 C 1.38947 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00165 * 201.13836 * 7 2 1 9 9 N 1.37103 * 119.99974 * 21.13965 * 7 2 1 10 10 C 1.46493 * 120.00047 * 16.26101 * 9 7 2 11 11 C 1.50704 * 109.46684 * 264.14121 * 10 9 7 12 12 O 1.20820 * 120.00212 * 0.02562 * 11 10 9 13 13 O 1.34238 * 119.99731 * 180.02562 * 11 10 9 14 14 C 1.34781 * 119.99762 * 196.25211 * 9 7 2 15 15 O 1.21286 * 120.00157 * 0.02562 * 14 9 7 16 16 C 1.50697 * 119.99679 * 179.97438 * 14 9 7 17 17 C 1.52999 * 109.47134 * 180.02562 * 16 14 9 18 18 N 1.46504 * 109.47484 * 180.02562 * 17 16 14 19 19 C 1.34771 * 120.00094 * 179.97438 * 18 17 16 20 20 O 1.21636 * 120.00130 * 0.02562 * 19 18 17 21 21 C 1.47191 * 119.99727 * 180.02562 * 19 18 17 22 22 C 1.44431 * 123.45807 * 180.02562 * 21 19 18 23 23 C 1.32770 * 113.08163 * 180.02562 * 22 21 19 24 24 S 1.75502 * 110.57462 * 359.74213 * 23 22 21 25 25 C 1.36003 * 123.46151 * 0.03122 * 21 19 18 26 26 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47686 * 24.13820 * 10 9 7 28 28 H 1.09001 * 109.47714 * 144.14505 * 10 9 7 29 29 H 0.96696 * 116.99443 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.46914 * 60.00660 * 16 14 9 31 31 H 1.08994 * 109.47748 * 300.00684 * 16 14 9 32 32 H 1.09000 * 109.46835 * 60.00423 * 17 16 14 33 33 H 1.09002 * 109.47044 * 300.00491 * 17 16 14 34 34 H 0.96996 * 119.99339 * 0.02562 * 18 17 16 35 35 H 1.08001 * 123.45588 * 0.02954 * 22 21 19 36 36 H 1.08000 * 124.70895 * 180.02562 * 23 22 21 37 37 H 1.07997 * 124.59603 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0342 -1.2347 0.3378 9 7 1.3924 -2.3509 -0.4272 10 6 0.1549 -2.2707 -1.2069 11 6 -1.0290 -2.4275 -0.2877 12 8 -0.8566 -2.5892 0.8972 13 8 -2.2751 -2.3876 -0.7853 14 6 1.9253 -3.5528 -0.1303 15 8 2.9497 -3.6192 0.5155 16 6 1.2474 -4.8142 -0.5999 17 6 2.0507 -6.0293 -0.1320 18 7 1.3921 -7.2556 -0.5890 19 6 1.9250 -8.4574 -0.2923 20 8 2.9524 -8.5241 0.3553 21 6 1.2636 -9.6894 -0.7520 22 6 1.7681 -11.0144 -0.4767 23 6 1.0104 -11.9768 -0.9890 24 16 -0.3691 -11.2931 -1.8315 25 6 0.1146 -9.6970 -1.4797 26 1 -0.4851 0.8401 -0.0004 27 1 0.1017 -1.3030 -1.7058 28 1 0.1432 -3.0653 -1.9530 29 1 -3.0023 -2.4925 -0.1568 30 1 1.1912 -4.8127 -1.6885 31 1 0.2410 -4.8623 -0.1842 32 1 2.1066 -6.0306 0.9566 33 1 3.0573 -5.9814 -0.5475 34 1 0.5730 -7.2024 -1.1058 35 1 2.6692 -11.2029 0.0880 36 1 1.2123 -13.0337 -0.8960 37 1 -0.4211 -8.8117 -1.7891 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:41 Heat of formation + Delta-G solvation = -116.242306 kcal Electronic energy + Delta-G solvation = -24870.746301 eV Core-core repulsion = 20933.534604 eV Total energy + Delta-G solvation = -3937.211697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93894 -39.50468 -38.28446 -36.98130 -35.48115 -34.97969 -34.49898 -31.95930 -31.06138 -29.48171 -27.76248 -25.75252 -24.83035 -23.08759 -21.35248 -21.18667 -19.65482 -18.80071 -18.19107 -17.28078 -17.13344 -16.98114 -16.47692 -15.90372 -15.40674 -15.29788 -14.67550 -14.55576 -14.37973 -14.31057 -14.06728 -13.32031 -13.25844 -13.15931 -12.73978 -12.65167 -12.51147 -12.03423 -11.74635 -11.63903 -11.45669 -11.39717 -11.11149 -10.99578 -10.50754 -10.40737 -10.35634 -9.94016 -9.73841 -9.35711 -9.12730 -9.01576 -8.67338 -8.63841 -7.99692 -6.52119 -3.96043 0.50655 1.25016 1.61987 1.82221 3.08069 3.13861 3.21912 3.29767 3.33399 3.34215 3.55558 4.00727 4.16874 4.46165 4.65715 4.81843 4.96507 4.97691 5.08750 5.23818 5.39700 5.48103 5.54167 5.72781 5.80736 5.88277 5.99786 6.22321 6.29027 6.36688 6.48966 6.52963 7.39378 7.48771 7.50256 7.89710 8.23314 8.28906 8.92694 9.01279 9.22253 9.74174 10.56918 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.022329 B = 0.002674 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.679059 B =10468.956246 C =11430.979279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.029 3.971 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.304 4.304 8 H 0.110 0.890 9 N -0.431 5.431 10 C 0.145 3.855 11 C 0.488 3.512 12 O -0.503 6.503 13 O -0.535 6.535 14 C 0.464 3.536 15 O -0.570 6.570 16 C -0.148 4.148 17 C 0.140 3.860 18 N -0.724 5.724 19 C 0.573 3.427 20 O -0.533 6.533 21 C -0.149 4.149 22 C -0.085 4.085 23 C -0.237 4.237 24 S 0.179 5.821 25 C -0.213 4.213 26 H 0.271 0.729 27 H 0.130 0.870 28 H 0.077 0.923 29 H 0.392 0.608 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.396 0.604 35 H 0.155 0.845 36 H 0.169 0.831 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -17.513 -8.871 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.174 4.174 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.431 4.431 8 H 0.127 0.873 9 N -0.151 5.151 10 C 0.018 3.982 11 C 0.328 3.672 12 O -0.388 6.388 13 O -0.346 6.346 14 C 0.252 3.748 15 O -0.453 6.453 16 C -0.189 4.189 17 C 0.017 3.983 18 N -0.375 5.375 19 C 0.358 3.642 20 O -0.410 6.410 21 C -0.167 4.167 22 C -0.114 4.114 23 C -0.372 4.372 24 S 0.444 5.556 25 C -0.351 4.351 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.095 0.905 29 H 0.249 0.751 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.230 0.770 35 H 0.172 0.828 36 H 0.187 0.813 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.771 -18.039 -8.784 21.176 hybrid contribution 0.202 1.722 1.040 2.022 sum -6.569 -16.317 -7.743 19.218 Atomic orbital electron populations 1.69792 1.06063 1.27870 1.48583 1.25239 0.95339 1.00045 0.96753 0.85804 0.79977 0.80839 0.77764 1.19087 1.20534 1.20856 1.19784 0.97736 0.83169 1.42408 0.87275 1.43452 1.19584 1.05417 1.46648 1.20706 0.81360 1.04892 0.91239 1.23873 0.83175 0.70923 0.89254 1.90629 1.85579 1.44870 1.17711 1.84526 1.17413 1.86389 1.46257 1.19691 0.87461 0.83885 0.83716 1.90571 1.25951 1.86346 1.42431 1.21769 1.00700 0.94449 1.01959 1.21083 0.96167 0.80236 1.00853 1.45932 1.28829 1.06042 1.56698 1.17563 0.84228 0.82628 0.79822 1.90819 1.23747 1.87115 1.39353 1.20415 0.97168 0.94777 1.04356 1.21184 1.00851 0.89462 0.99874 1.25514 1.00438 1.03774 1.07473 1.83044 1.25034 0.95148 1.52350 1.25694 1.00979 1.03979 1.04485 0.91890 0.85197 0.90497 0.75129 0.89678 0.89832 0.90342 0.90303 0.77028 0.82759 0.81312 0.81175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.55 9.25 55.50 0.51 -22.03 16 2 C 0.03 0.73 4.89 -17.47 -0.09 0.64 16 3 Si 0.93 20.15 29.60 -169.99 -5.03 15.12 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.16 9.35 -14.93 -0.14 -8.30 16 8 H 0.11 3.10 7.36 -52.49 -0.39 2.71 16 9 N -0.43 -10.44 2.18 -116.10 -0.25 -10.69 16 10 C 0.14 2.94 4.97 -5.20 -0.03 2.92 16 11 C 0.49 10.18 5.87 36.01 0.21 10.39 16 12 O -0.50 -12.58 16.81 -18.74 -0.32 -12.90 16 13 O -0.53 -8.90 13.42 -39.28 -0.53 -9.43 16 14 C 0.46 10.85 7.42 -10.98 -0.08 10.77 16 15 O -0.57 -15.47 15.62 5.55 0.09 -15.38 16 16 C -0.15 -2.51 4.42 -27.88 -0.12 -2.63 16 17 C 0.14 2.37 4.96 -4.04 -0.02 2.35 16 18 N -0.72 -9.70 5.52 -61.46 -0.34 -10.04 16 19 C 0.57 8.55 7.79 -12.63 -0.10 8.45 16 20 O -0.53 -10.15 16.80 5.25 0.09 -10.06 16 21 C -0.15 -1.72 5.98 -104.63 -0.63 -2.35 16 22 C -0.08 -0.88 10.10 -39.02 -0.39 -1.27 16 23 C -0.24 -1.84 11.12 28.86 0.32 -1.52 16 24 S 0.18 1.23 23.02 -107.50 -2.48 -1.25 16 25 C -0.21 -1.83 10.38 29.93 0.31 -1.51 16 26 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 27 H 0.13 2.78 6.34 -51.93 -0.33 2.45 16 28 H 0.08 1.21 6.69 -51.93 -0.35 0.86 16 29 H 0.39 4.96 9.10 45.56 0.41 5.38 16 30 H 0.08 1.15 7.41 -51.93 -0.39 0.77 16 31 H 0.08 1.37 7.52 -51.93 -0.39 0.98 16 32 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 33 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 34 H 0.40 3.90 6.97 -40.82 -0.28 3.62 16 35 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.17 1.05 7.01 -52.49 -0.37 0.68 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -36.02 339.84 -6.78 -42.80 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -2.90 Total: 10.80 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: -0.75 Total: 17.94 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.08 Total: -42.76 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -0.67 Total: -47.77 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.48 Total: -1.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.02 -6.78 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.439 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds