Wall clock time and date at job start Tue Mar 31 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48498 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47315 * 299.99825 * 3 2 1 6 6 H 1.48497 * 109.47361 * 59.99992 * 3 2 1 7 7 C 1.38947 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00165 * 201.13836 * 7 2 1 9 9 N 1.37103 * 119.99974 * 21.13965 * 7 2 1 10 10 C 1.46493 * 120.00047 * 16.26101 * 9 7 2 11 11 C 1.50704 * 109.46684 * 264.14121 * 10 9 7 12 12 O 1.20820 * 120.00212 * 0.02562 * 11 10 9 13 13 O 1.34238 * 119.99731 * 180.02562 * 11 10 9 14 14 C 1.34781 * 119.99762 * 196.25211 * 9 7 2 15 15 O 1.21286 * 120.00157 * 0.02562 * 14 9 7 16 16 C 1.50697 * 119.99679 * 179.97438 * 14 9 7 17 17 C 1.52999 * 109.47134 * 180.02562 * 16 14 9 18 18 N 1.46504 * 109.47484 * 180.02562 * 17 16 14 19 19 C 1.34771 * 120.00094 * 179.97438 * 18 17 16 20 20 O 1.21636 * 120.00130 * 0.02562 * 19 18 17 21 21 C 1.47191 * 119.99727 * 180.02562 * 19 18 17 22 22 C 1.44431 * 123.45807 * 180.02562 * 21 19 18 23 23 C 1.32770 * 113.08163 * 180.02562 * 22 21 19 24 24 S 1.75502 * 110.57462 * 359.74213 * 23 22 21 25 25 C 1.36003 * 123.46151 * 0.03122 * 21 19 18 26 26 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47686 * 24.13820 * 10 9 7 28 28 H 1.09001 * 109.47714 * 144.14505 * 10 9 7 29 29 H 0.96696 * 116.99443 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.46914 * 60.00660 * 16 14 9 31 31 H 1.08994 * 109.47748 * 300.00684 * 16 14 9 32 32 H 1.09000 * 109.46835 * 60.00423 * 17 16 14 33 33 H 1.09002 * 109.47044 * 300.00491 * 17 16 14 34 34 H 0.96996 * 119.99339 * 0.02562 * 18 17 16 35 35 H 1.08001 * 123.45588 * 0.02954 * 22 21 19 36 36 H 1.08000 * 124.70895 * 180.02562 * 23 22 21 37 37 H 1.07997 * 124.59603 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0342 -1.2347 0.3378 9 7 1.3924 -2.3509 -0.4272 10 6 0.1549 -2.2707 -1.2069 11 6 -1.0290 -2.4275 -0.2877 12 8 -0.8566 -2.5892 0.8972 13 8 -2.2751 -2.3876 -0.7853 14 6 1.9253 -3.5528 -0.1303 15 8 2.9497 -3.6192 0.5155 16 6 1.2474 -4.8142 -0.5999 17 6 2.0507 -6.0293 -0.1320 18 7 1.3921 -7.2556 -0.5890 19 6 1.9250 -8.4574 -0.2923 20 8 2.9524 -8.5241 0.3553 21 6 1.2636 -9.6894 -0.7520 22 6 1.7681 -11.0144 -0.4767 23 6 1.0104 -11.9768 -0.9890 24 16 -0.3691 -11.2931 -1.8315 25 6 0.1146 -9.6970 -1.4797 26 1 -0.4851 0.8401 -0.0004 27 1 0.1017 -1.3030 -1.7058 28 1 0.1432 -3.0653 -1.9530 29 1 -3.0023 -2.4925 -0.1568 30 1 1.1912 -4.8127 -1.6885 31 1 0.2410 -4.8623 -0.1842 32 1 2.1066 -6.0306 0.9566 33 1 3.0573 -5.9814 -0.5475 34 1 0.5730 -7.2024 -1.1058 35 1 2.6692 -11.2029 0.0880 36 1 1.2123 -13.0337 -0.8960 37 1 -0.4211 -8.8117 -1.7891 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:40 Heat of formation + Delta-G solvation = -144.004062 kcal Electronic energy + Delta-G solvation = -24871.950141 eV Core-core repulsion = 20933.534604 eV Total energy + Delta-G solvation = -3938.415537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34323 -40.91033 -39.97233 -37.82563 -37.11484 -36.46203 -36.15343 -33.83553 -32.31666 -30.43988 -29.45459 -27.25903 -26.03206 -24.43413 -22.79603 -22.37200 -20.99480 -20.02626 -19.02684 -19.00507 -18.68961 -18.24757 -17.91610 -17.47966 -16.80908 -16.69440 -16.21306 -16.07317 -15.89694 -15.70760 -15.42277 -14.51482 -14.45144 -14.20437 -13.93025 -13.76138 -13.61851 -13.49073 -13.37173 -13.32625 -12.97690 -12.64642 -12.56700 -12.30878 -12.13238 -12.09320 -12.08534 -11.53231 -11.10358 -10.96268 -10.51526 -10.30512 -9.97969 -9.88313 -9.32568 -8.45707 -5.96607 -0.20734 0.64953 0.96727 0.99486 1.33978 1.43056 1.56458 1.69457 1.85287 1.99402 2.28972 2.30712 2.55093 2.96705 3.12130 3.65441 3.87294 3.92334 3.99082 4.03129 4.26503 4.32899 4.46992 4.49091 4.75902 4.84565 4.84740 4.89491 4.96005 5.15385 5.25351 5.30830 5.45518 5.97807 5.99135 6.36871 6.47535 7.09197 7.15116 7.28987 7.46732 7.89782 8.60968 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.022329 B = 0.002674 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.679059 B =10468.956246 C =11430.979279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.002 3.998 3 Si 0.989 3.011 4 H -0.275 1.275 5 H -0.258 1.258 6 H -0.286 1.286 7 C -0.341 4.341 8 H 0.076 0.924 9 N -0.443 5.443 10 C 0.139 3.861 11 C 0.496 3.504 12 O -0.552 6.552 13 O -0.516 6.516 14 C 0.449 3.551 15 O -0.624 6.624 16 C -0.128 4.128 17 C 0.152 3.848 18 N -0.707 5.707 19 C 0.569 3.431 20 O -0.589 6.589 21 C -0.185 4.185 22 C -0.115 4.115 23 C -0.233 4.233 24 S 0.254 5.746 25 C -0.205 4.205 26 H 0.275 0.725 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.414 0.586 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.417 0.583 35 H 0.139 0.861 36 H 0.195 0.805 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.234 -18.527 -11.574 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.200 4.200 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.183 1.183 6 H -0.212 1.212 7 C -0.468 4.468 8 H 0.094 0.906 9 N -0.162 5.162 10 C 0.014 3.986 11 C 0.339 3.661 12 O -0.441 6.441 13 O -0.329 6.329 14 C 0.239 3.761 15 O -0.511 6.511 16 C -0.168 4.168 17 C 0.028 3.972 18 N -0.359 5.359 19 C 0.357 3.643 20 O -0.471 6.471 21 C -0.203 4.203 22 C -0.144 4.144 23 C -0.368 4.368 24 S 0.519 5.481 25 C -0.344 4.344 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.149 0.851 29 H 0.273 0.727 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.255 0.745 35 H 0.157 0.843 36 H 0.212 0.788 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.027 -19.058 -11.555 24.439 hybrid contribution 1.014 1.961 1.831 2.868 sum -9.013 -17.098 -9.725 21.636 Atomic orbital electron populations 1.69863 1.06627 1.28692 1.47794 1.25897 0.96163 1.02166 0.95735 0.84940 0.78267 0.77230 0.78205 1.20016 1.18266 1.21199 1.19631 0.97178 0.85284 1.44754 0.90591 1.43605 1.20794 1.04974 1.46782 1.20938 0.79737 1.06469 0.91473 1.23850 0.84326 0.69587 0.88351 1.90628 1.86470 1.47297 1.19698 1.84450 1.16663 1.85426 1.46319 1.20745 0.86926 0.85526 0.82877 1.90534 1.28402 1.87342 1.44774 1.21628 0.99997 0.90533 1.04645 1.20659 0.95887 0.82026 0.98648 1.45631 1.29262 1.04509 1.56512 1.18177 0.83585 0.83825 0.78735 1.90783 1.26356 1.87911 1.42000 1.20146 0.99125 0.93378 1.07642 1.21169 1.01574 0.89987 1.01632 1.25864 1.00241 1.04656 1.06043 1.82885 1.22722 0.92693 1.49776 1.26096 0.99493 1.06601 1.02216 0.91490 0.86148 0.85133 0.72692 0.84970 0.88375 0.93952 0.92319 0.74514 0.84308 0.78813 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.84 9.25 21.66 0.20 -44.64 16 2 C 0.00 0.10 4.89 84.93 0.42 0.52 16 3 Si 0.99 41.52 29.60 68.60 2.03 43.55 16 4 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.34 -18.88 9.35 84.04 0.79 -18.09 16 8 H 0.08 4.60 7.36 -2.91 -0.02 4.58 16 9 N -0.44 -21.60 2.18 -639.62 -1.39 -22.99 16 10 C 0.14 5.39 4.97 85.64 0.43 5.82 16 11 C 0.50 19.73 5.87 71.24 0.42 20.15 16 12 O -0.55 -27.30 16.81 21.98 0.37 -26.93 16 13 O -0.52 -15.43 13.42 -51.50 -0.69 -16.12 16 14 C 0.45 21.44 7.42 87.66 0.65 22.09 16 15 O -0.62 -35.88 15.62 -3.05 -0.05 -35.93 16 16 C -0.13 -4.17 4.42 29.85 0.13 -4.04 16 17 C 0.15 5.31 4.96 86.38 0.43 5.74 16 18 N -0.71 -18.50 5.52 -466.59 -2.58 -21.07 16 19 C 0.57 17.41 7.79 86.60 0.67 18.09 16 20 O -0.59 -24.05 16.80 -4.15 -0.07 -24.12 16 21 C -0.18 -4.13 5.98 -19.87 -0.12 -4.25 16 22 C -0.11 -2.37 10.10 22.67 0.23 -2.14 16 23 C -0.23 -3.07 11.12 66.64 0.74 -2.33 16 24 S 0.25 2.46 23.02 -56.49 -1.30 1.16 16 25 C -0.21 -2.87 10.38 67.30 0.70 -2.17 16 26 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 27 H 0.12 4.94 6.34 -2.39 -0.02 4.93 16 28 H 0.13 3.55 6.69 -2.39 -0.02 3.54 16 29 H 0.41 9.04 9.10 -74.06 -0.67 8.36 16 30 H 0.13 3.07 7.41 -2.39 -0.02 3.05 16 31 H 0.10 2.98 7.52 -2.39 -0.02 2.97 16 32 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.42 7.06 6.97 -92.71 -0.65 6.41 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.20 1.52 7.01 -2.91 -0.02 1.50 16 Total: -1.00 -85.11 339.84 1.84 -83.28 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.16 Total: 24.43 kcal Atomic # 6 Polarization: 33.91 SS G_CDS: 5.48 Total: 39.39 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -3.77 Total: -88.70 kcal Atomic # 8 Polarization: -102.66 SS G_CDS: -0.44 Total: -103.10 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.30 Total: 1.16 kcal Total: -85.11 1.84 -83.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.728 kcal (2) G-P(sol) polarization free energy of solvation -85.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds