Wall clock time and date at job start Tue Mar 31 2020 04:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48497 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47241 * 300.00012 * 3 2 1 6 6 H 1.48501 * 109.47173 * 59.99929 * 3 2 1 7 7 C 1.40045 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00199 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99835 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00265 * 180.02562 * 9 7 2 12 12 N 1.40100 * 119.99909 * 179.97438 * 11 9 7 13 13 C 1.34784 * 119.99901 * 179.97438 * 12 11 9 14 14 O 1.21646 * 119.99863 * 359.72100 * 13 12 11 15 15 C 1.47166 * 120.00083 * 179.72482 * 13 12 11 16 16 C 1.35050 * 122.47476 * 180.02562 * 15 13 12 17 17 S 1.76184 * 108.25521 * 179.97438 * 16 15 13 18 18 C 1.76054 * 90.17723 * 359.97438 * 17 16 15 19 19 N 1.38462 * 125.18804 * 179.97438 * 18 17 16 20 20 C 1.47012 * 110.99939 * 123.61432 * 19 18 17 21 21 C 1.53097 * 109.25784 * 177.61106 * 20 19 18 22 22 O 1.43015 * 109.25986 * 56.84552 * 21 20 19 23 23 C 1.43016 * 113.73857 * 301.32558 * 22 21 20 24 24 C 1.47011 * 111.00093 * 359.97438 * 19 18 17 25 25 N 1.29448 * 109.62300 * 359.75500 * 18 17 16 26 26 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 27 27 H 0.97004 * 120.00035 * 359.97438 * 11 9 7 28 28 H 0.97000 * 120.00702 * 359.71899 * 12 11 9 29 29 H 1.07991 * 125.87481 * 359.93839 * 16 15 13 30 30 H 1.09004 * 109.50218 * 297.53899 * 20 19 18 31 31 H 1.08991 * 109.50972 * 57.67306 * 20 19 18 32 32 H 1.09001 * 109.50700 * 296.90703 * 21 20 19 33 33 H 1.09005 * 109.54373 * 176.80368 * 21 20 19 34 34 H 1.08998 * 109.51014 * 298.74408 * 23 22 21 35 35 H 1.09002 * 109.54355 * 178.62752 * 23 22 21 36 36 H 1.08998 * 109.50717 * 302.32955 * 24 19 18 37 37 H 1.09001 * 109.50731 * 62.45476 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 7 1.2485 -4.8609 0.0021 13 6 1.9224 -6.0282 0.0027 14 8 3.1389 -6.0282 -0.0025 15 6 1.1866 -7.3027 0.0093 16 6 1.8108 -8.5003 0.0107 17 16 0.5821 -9.7630 0.0199 18 6 -0.6834 -8.5391 0.0220 19 7 -2.0437 -8.7978 0.0283 20 6 -2.6984 -8.1468 1.1724 21 6 -4.2055 -8.4085 1.1076 22 8 -4.4386 -9.8193 1.0812 23 6 -3.8158 -10.4852 -0.0207 24 6 -2.3048 -10.2446 0.0327 25 7 -0.1483 -7.3604 0.0213 26 1 -0.4850 0.8401 0.0004 27 1 2.9191 -3.6477 0.0020 28 1 0.2785 -4.8611 0.0059 29 1 2.8792 -8.6572 0.0062 30 1 -2.2979 -8.5539 2.1008 31 1 -2.5135 -7.0734 1.1351 32 1 -4.6152 -7.9549 0.2052 33 1 -4.6886 -7.9761 1.9839 34 1 -4.2141 -10.0919 -0.9560 35 1 -4.0164 -11.5549 0.0392 36 1 -1.8324 -10.7023 -0.8365 37 1 -1.8980 -10.6852 0.9429 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:15 Heat of formation + Delta-G solvation = -51.329706 kcal Electronic energy + Delta-G solvation = -24582.892267 eV Core-core repulsion = 20680.788142 eV Total energy + Delta-G solvation = -3902.104124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73719 -40.97104 -39.81605 -38.95253 -36.89634 -36.04515 -34.65882 -32.44597 -32.25524 -31.24954 -28.60065 -28.40085 -25.98248 -25.39805 -23.30651 -22.46132 -21.84090 -21.10251 -20.17397 -19.00057 -18.56712 -18.09414 -17.43655 -17.21632 -17.02106 -16.83772 -16.34519 -16.28243 -16.08777 -15.90890 -15.67749 -15.37565 -14.96824 -14.61646 -14.46165 -14.40900 -13.54282 -13.31101 -13.11895 -12.85821 -12.77036 -12.76477 -12.45524 -12.04015 -12.00691 -11.90734 -11.56907 -11.55104 -10.99112 -10.95111 -10.71599 -10.36567 -10.16524 -9.42938 -9.04829 -8.41574 -6.98086 -0.66039 -0.10273 0.24466 0.73972 1.23084 1.40961 1.44939 1.62377 1.89427 2.11245 2.26780 2.38535 2.81890 3.05158 3.47833 3.58235 3.68095 3.74181 3.88453 4.03069 4.06108 4.11591 4.13610 4.37683 4.49893 4.62050 4.70794 4.78143 4.88910 5.22555 5.24909 5.39395 5.42110 5.87997 5.99133 6.04440 6.21559 6.47559 6.74189 7.06040 7.21446 8.27830 8.53829 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.002836 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.444900 B = 9870.509027 C =11397.226267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.031 3.969 3 Si 1.008 2.992 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.556 4.556 8 H 0.095 0.905 9 C 0.539 3.461 10 O -0.620 6.620 11 N -0.556 5.556 12 N -0.496 5.496 13 C 0.577 3.423 14 O -0.574 6.574 15 C 0.024 3.976 16 C -0.180 4.180 17 S 0.164 5.836 18 C 0.249 3.751 19 N -0.446 5.446 20 C 0.024 3.976 21 C 0.068 3.932 22 O -0.393 6.393 23 C 0.066 3.934 24 C 0.001 3.999 25 N -0.507 5.507 26 H 0.280 0.720 27 H 0.420 0.580 28 H 0.430 0.570 29 H 0.206 0.794 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 -23.759 1.104 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.185 4.185 3 Si 0.827 3.173 4 H -0.170 1.170 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.594 4.594 8 H 0.113 0.887 9 C 0.346 3.654 10 O -0.505 6.505 11 N -0.308 5.308 12 N -0.237 5.237 13 C 0.361 3.639 14 O -0.454 6.454 15 C -0.110 4.110 16 C -0.324 4.324 17 S 0.416 5.584 18 C -0.123 4.123 19 N -0.168 5.168 20 C -0.104 4.104 21 C -0.009 4.009 22 O -0.312 6.312 23 C -0.011 4.011 24 C -0.126 4.126 25 N -0.228 5.228 26 H 0.090 0.910 27 H 0.261 0.739 28 H 0.271 0.729 29 H 0.222 0.778 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.134 0.866 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.808 -24.197 0.821 24.898 hybrid contribution 1.190 1.591 0.246 2.002 sum -4.618 -22.606 1.067 23.097 Atomic orbital electron populations 1.70163 1.09504 1.29539 1.34905 1.27021 0.95687 1.04855 0.90980 0.84811 0.79207 0.74587 0.78734 1.16996 1.19090 1.19028 1.21258 0.95100 0.88274 1.54721 0.88665 1.19030 0.87385 0.82127 0.76896 1.90579 1.15441 1.86701 1.57781 1.45543 1.07900 0.94970 1.82428 1.44690 1.09553 0.97906 1.71530 1.17493 0.86602 0.81779 0.77997 1.90757 1.13074 1.87159 1.54432 1.19467 0.87901 0.93517 1.10080 1.27237 1.06361 0.93517 1.05243 1.84628 0.95275 1.08595 1.69942 1.26235 0.94343 0.90830 1.00927 1.58578 1.02276 1.14155 1.41788 1.23052 0.96609 1.00900 0.89833 1.22783 0.91807 0.81919 1.04422 1.88016 1.73887 1.20348 1.48941 1.22872 0.88019 1.00070 0.90152 1.23395 1.01113 0.83206 1.04873 1.66551 1.09903 1.25409 1.20947 0.90998 0.73909 0.72883 0.77755 0.91834 0.89394 0.91589 0.85847 0.91358 0.84448 0.86590 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.44 11.83 21.84 0.26 -48.18 16 2 C 0.03 1.70 5.50 85.30 0.47 2.17 16 3 Si 1.01 40.04 29.56 68.60 2.03 42.07 16 4 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.56 -31.38 9.54 24.83 0.24 -31.14 16 8 H 0.10 4.83 7.85 -2.91 -0.02 4.80 16 9 C 0.54 31.91 7.86 86.36 0.68 32.59 16 10 O -0.62 -41.16 14.86 -4.31 -0.06 -41.22 16 11 N -0.56 -28.11 6.26 -176.63 -1.10 -29.22 16 12 N -0.50 -22.80 6.26 -176.04 -1.10 -23.90 16 13 C 0.58 23.48 7.91 86.59 0.68 24.16 16 14 O -0.57 -24.82 16.50 -4.18 -0.07 -24.89 16 15 C 0.02 0.77 6.67 40.48 0.27 1.04 16 16 C -0.18 -4.41 10.83 67.09 0.73 -3.69 16 17 S 0.16 2.82 21.51 -56.49 -1.22 1.60 16 18 C 0.25 5.95 6.97 179.44 1.25 7.20 16 19 N -0.45 -8.90 4.79 -703.08 -3.37 -12.26 16 20 C 0.02 0.46 5.55 86.31 0.48 0.94 16 21 C 0.07 1.06 7.01 72.01 0.50 1.57 16 22 O -0.39 -6.13 10.83 -148.98 -1.61 -7.74 16 23 C 0.07 0.67 7.01 72.02 0.50 1.18 16 24 C 0.00 0.01 4.68 86.32 0.40 0.42 16 25 N -0.51 -16.05 9.71 -187.41 -1.82 -17.87 16 26 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 27 H 0.42 19.70 7.98 -213.32 -1.70 18.00 16 28 H 0.43 20.41 7.48 -213.32 -1.59 18.81 16 29 H 0.21 4.32 8.01 -2.92 -0.02 4.30 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 2.15 7.93 -2.39 -0.02 2.13 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.12 1.00 7.68 -2.39 -0.02 0.98 16 37 H 0.08 0.80 7.91 -2.39 -0.02 0.78 16 Total: -1.00 -79.42 336.77 -4.00 -83.43 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -2.14 Total: 41.76 kcal Atomic # 6 Polarization: 30.23 SS G_CDS: 6.21 Total: 36.44 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -7.14 Total: -131.44 kcal Atomic # 8 Polarization: -72.11 SS G_CDS: -1.75 Total: -73.85 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.22 Total: 1.60 kcal Total: -79.42 -4.00 -83.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.098 kcal (2) G-P(sol) polarization free energy of solvation -79.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds