Wall clock time and date at job start Tue Mar 31 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47027 * 270.00191 * 3 2 1 5 5 H 1.48494 * 109.47148 * 30.00041 * 3 2 1 6 6 H 1.48499 * 109.46985 * 150.00330 * 3 2 1 7 7 C 1.37872 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00475 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00249 * 179.97438 * 10 9 7 12 12 O 1.21596 * 119.99294 * 0.02562 * 11 10 9 13 13 N 1.34765 * 120.00390 * 180.02562 * 11 10 9 14 14 N 1.40100 * 120.00098 * 0.02562 * 13 11 10 15 15 C 1.34778 * 120.00334 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00280 * 180.02562 * 15 14 13 18 18 N 1.46504 * 109.47380 * 179.97438 * 17 15 14 19 19 C 1.34774 * 119.99745 * 179.97438 * 18 17 15 20 20 O 1.21702 * 120.00519 * 359.97438 * 19 18 17 21 21 C 1.46584 * 119.99515 * 180.02562 * 19 18 17 22 22 C 1.36652 * 125.45799 * 180.02562 * 21 19 18 23 23 C 1.37475 * 113.29531 * 179.97438 * 22 21 19 24 24 C 1.33814 * 115.10326 * 0.02562 * 23 22 21 25 25 S 1.70613 * 110.95401 * 359.97438 * 24 23 22 26 26 H 0.96998 * 119.99744 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46688 * 60.00256 * 9 7 2 28 28 H 1.09003 * 109.46915 * 300.00856 * 9 7 2 29 29 H 0.96999 * 120.00048 * 0.02562 * 10 9 7 30 30 H 0.97005 * 120.00483 * 180.02562 * 13 11 10 31 31 H 0.97003 * 120.00249 * 0.02562 * 14 13 11 32 32 H 1.09007 * 109.47017 * 59.99830 * 17 15 14 33 33 H 1.09000 * 109.47116 * 299.99994 * 17 15 14 34 34 H 0.97002 * 119.99564 * 0.02562 * 18 17 15 35 35 H 1.07998 * 123.35183 * 0.27017 * 22 21 19 36 36 H 1.07999 * 122.44590 * 180.02562 * 23 22 21 37 37 H 1.07999 * 124.52176 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5584 -5.1055 0.0000 13 7 2.6296 -5.9077 0.0005 14 7 4.0071 -5.6517 0.0011 15 6 4.8829 -6.6761 0.0021 16 8 4.4787 -7.8196 0.0030 17 6 6.3645 -6.4008 0.0033 18 7 7.0971 -7.6695 0.0049 19 6 8.4448 -7.6694 0.0056 20 8 9.0533 -6.6154 0.0044 21 6 9.1777 -8.9389 0.0066 22 6 10.5381 -9.0688 0.0079 23 6 10.9592 -10.3775 0.0093 24 6 9.9796 -11.2891 0.0085 25 16 8.4475 -10.5383 0.0068 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 3.1567 -3.4354 -0.0002 30 1 2.3064 -6.8223 0.0005 31 1 4.3305 -4.7372 0.0014 32 1 6.6271 -5.8289 0.8933 33 1 6.6286 -5.8295 -0.8867 34 1 6.6120 -8.5095 0.0047 35 1 11.2149 -8.2273 0.0126 36 1 12.0042 -10.6499 0.0108 37 1 10.1377 -12.3574 0.0098 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:46 Heat of formation + Delta-G solvation = -26.129262 kcal Electronic energy + Delta-G solvation = -23499.176986 eV Core-core repulsion = 19598.165635 eV Total energy + Delta-G solvation = -3901.011351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74542 -39.92970 -38.98135 -37.86791 -35.75910 -34.84342 -34.38326 -32.38634 -31.52306 -30.43427 -27.95108 -27.14448 -25.11653 -23.05500 -22.09574 -21.31171 -20.57501 -19.97645 -19.32604 -18.95260 -17.64706 -16.79863 -16.46122 -16.41722 -16.09725 -15.70340 -15.44865 -15.36212 -14.88834 -14.73551 -14.47589 -14.14605 -13.64701 -13.55758 -13.23725 -13.21994 -12.92874 -12.74919 -12.22762 -12.08051 -11.42978 -11.30000 -11.06217 -10.93800 -10.66564 -10.57009 -10.38045 -9.81808 -9.72551 -9.48445 -9.32831 -9.06547 -8.87096 -8.46623 -7.95729 -6.23792 -4.31696 0.03974 1.00148 1.41320 1.66711 1.93367 2.07179 2.70255 2.78280 3.20344 3.26544 3.28549 3.54183 3.60064 3.97315 4.28095 4.36886 4.53743 4.82813 4.86157 4.92460 5.01127 5.12782 5.14815 5.47807 5.69142 5.72087 5.84682 6.32861 6.55457 6.95234 7.18014 7.26641 7.30479 7.42417 7.50908 7.67219 7.81692 7.94529 8.56540 8.73268 8.97901 9.35093 10.86176 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.002048 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.640943 B =13665.956878 C =15001.151028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.264 3.736 10 N -0.724 5.724 11 C 0.701 3.299 12 O -0.575 6.575 13 N -0.542 5.542 14 N -0.514 5.514 15 C 0.509 3.491 16 O -0.539 6.539 17 C 0.110 3.890 18 N -0.715 5.715 19 C 0.596 3.404 20 O -0.526 6.526 21 C -0.271 4.271 22 C -0.052 4.052 23 C -0.152 4.152 24 C -0.229 4.229 25 S 0.212 5.788 26 H 0.267 0.733 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.382 0.618 30 H 0.436 0.564 31 H 0.426 0.574 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.411 0.589 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.913 -20.798 0.022 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.143 3.857 10 N -0.378 5.378 11 C 0.401 3.599 12 O -0.449 6.449 13 N -0.301 5.301 14 N -0.264 5.264 15 C 0.293 3.707 16 O -0.414 6.414 17 C -0.019 4.019 18 N -0.371 5.371 19 C 0.383 3.617 20 O -0.403 6.403 21 C -0.391 4.391 22 C -0.085 4.085 23 C -0.183 4.183 24 C -0.367 4.367 25 S 0.479 5.521 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.215 0.785 30 H 0.281 0.719 31 H 0.269 0.731 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.249 0.751 35 H 0.173 0.827 36 H 0.164 0.836 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 19.414 -21.192 0.025 28.740 hybrid contribution 2.225 1.083 -0.007 2.474 sum 21.638 -20.108 0.018 29.539 Atomic orbital electron populations 1.69971 1.06107 1.27470 1.48432 1.24943 0.94941 0.99482 0.94571 0.86388 0.79586 0.82509 0.78262 1.20421 1.20981 1.19709 1.21163 0.93233 0.90255 1.53813 0.91863 1.19117 0.87687 0.80823 0.98089 1.45820 1.10730 1.04486 1.76720 1.16010 0.84227 0.80905 0.78807 1.91001 1.12187 1.82511 1.59193 1.44875 0.91684 1.10357 1.83224 1.44658 0.96422 1.10175 1.75155 1.20532 0.87941 0.84903 0.77284 1.90730 1.79342 1.20734 1.50639 1.20960 0.86931 0.87723 1.06258 1.45500 1.05868 1.09584 1.76118 1.16851 0.81132 0.87532 0.76234 1.90868 1.68088 1.31550 1.49818 1.24527 0.98188 0.96921 1.19474 1.20835 0.93373 0.98149 0.96168 1.20076 1.01155 0.91638 1.05429 1.25408 0.97717 1.05118 1.08455 1.83281 1.06687 0.95176 1.66972 0.92321 0.95269 0.95269 0.78536 0.71903 0.73142 0.87070 0.87068 0.75092 0.82695 0.83560 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.29 55.43 0.74 -24.44 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -14.05 9.28 -34.44 -0.32 -14.36 16 8 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 9 C 0.26 6.64 5.43 -5.20 -0.03 6.61 16 10 N -0.72 -14.11 5.51 -66.41 -0.37 -14.48 16 11 C 0.70 13.56 8.68 -86.93 -0.75 12.81 16 12 O -0.58 -13.66 17.18 5.28 0.09 -13.57 16 13 N -0.54 -7.99 6.26 27.63 0.17 -7.82 16 14 N -0.51 -5.63 6.26 31.22 0.20 -5.44 16 15 C 0.51 5.27 8.02 -10.99 -0.09 5.18 16 16 O -0.54 -7.04 15.51 5.56 0.09 -6.96 16 17 C 0.11 0.89 6.15 -5.19 -0.03 0.86 16 18 N -0.71 -6.53 5.52 -62.83 -0.35 -6.88 16 19 C 0.60 6.23 7.78 -12.90 -0.10 6.13 16 20 O -0.53 -6.94 16.84 5.19 0.09 -6.86 16 21 C -0.27 -2.36 6.45 -36.79 -0.24 -2.60 16 22 C -0.05 -0.40 10.01 -40.43 -0.40 -0.80 16 23 C -0.15 -0.89 10.15 -41.41 -0.42 -1.31 16 24 C -0.23 -1.23 10.92 29.18 0.32 -0.91 16 25 S 0.21 1.36 22.16 -107.50 -2.38 -1.02 16 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.38 6.04 6.24 -40.82 -0.25 5.78 16 30 H 0.44 6.33 8.10 -182.59 -1.48 4.85 16 31 H 0.43 3.77 6.70 -182.59 -1.22 2.54 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 3.63 6.55 -40.82 -0.27 3.36 16 35 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -34.82 347.95 -9.38 -44.21 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.72 Total: 9.68 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: -2.16 Total: 13.24 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 0.39 Total: -59.06 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: 0.26 Total: -27.38 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.38 Total: -1.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.82 -9.38 -44.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.076 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds