Wall clock time and date at job start Tue Mar 31 2020 04:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48503 * 109.46691 * 269.99685 * 3 2 1 5 5 H 1.48491 * 109.47326 * 29.99639 * 3 2 1 6 6 H 1.48493 * 109.47142 * 150.00230 * 3 2 1 7 7 C 1.38951 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99431 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99881 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99914 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99843 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47115 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99867 * 180.02562 * 13 12 10 15 15 O 1.21274 * 120.00179 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47095 * 179.97438 * 16 14 13 18 18 H 1.08995 * 109.46988 * 304.99095 * 17 16 14 19 19 O 1.42891 * 109.47533 * 64.99867 * 17 16 14 20 20 C 1.50706 * 109.46958 * 184.99779 * 17 16 14 21 21 C 1.38244 * 119.98773 * 99.99673 * 20 17 16 22 22 C 1.38217 * 120.01084 * 180.02562 * 21 20 17 23 23 C 1.38351 * 119.98541 * 0.25893 * 22 21 20 24 24 Cl 1.73604 * 120.00786 * 179.69323 * 23 22 21 25 25 C 1.38348 * 119.97455 * 359.46866 * 23 22 21 26 26 C 1.38212 * 119.98576 * 0.54994 * 25 23 22 27 27 H 0.97000 * 119.99918 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99650 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47363 * 59.99763 * 12 10 9 30 30 H 1.09005 * 109.47581 * 299.99572 * 12 10 9 31 31 H 0.96998 * 119.99670 * 359.97438 * 13 12 10 32 32 H 1.09004 * 109.47353 * 59.98971 * 16 14 13 33 33 H 1.09012 * 109.46807 * 299.99422 * 16 14 13 34 34 H 0.96699 * 114.00474 * 59.99269 * 19 17 16 35 35 H 1.07999 * 119.99331 * 0.02562 * 21 20 17 36 36 H 1.08002 * 120.00169 * 179.97438 * 22 21 20 37 37 H 1.08007 * 120.00586 * 180.25470 * 25 23 22 38 38 H 1.08000 * 119.99226 * 179.72624 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9765 0.0027 14 6 1.7464 -7.2471 0.0027 15 8 0.5541 -7.4687 0.0028 16 6 2.7256 -8.3926 0.0038 17 6 1.9606 -9.7176 0.0043 18 1 1.2683 -9.7370 0.8459 19 8 1.2299 -9.8462 -1.2169 20 6 2.9352 -10.8603 0.1291 21 6 3.1349 -11.4673 1.3550 22 6 4.0290 -12.5150 1.4702 23 6 4.7282 -12.9526 0.3595 24 17 5.8572 -14.2633 0.5051 25 6 4.5238 -12.3484 -0.8682 26 6 3.6297 -11.3006 -0.9821 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6173 -4.9212 -0.8880 30 1 0.6167 -4.9201 0.8920 31 1 3.1494 -5.7992 0.0022 32 1 3.3518 -8.3345 0.8942 33 1 3.3530 -8.3351 -0.8859 34 1 1.7836 -9.8367 -2.0096 35 1 2.5921 -11.1228 2.2228 36 1 4.1851 -12.9889 2.4281 37 1 5.0663 -12.6923 -1.7365 38 1 3.4734 -10.8259 -1.9395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804820443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:50 Heat of formation + Delta-G solvation = -136.962746 kcal Electronic energy + Delta-G solvation = -23664.748522 eV Core-core repulsion = 19724.594613 eV Total energy + Delta-G solvation = -3940.153909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26211 -40.52906 -39.80009 -38.04000 -37.13734 -36.22541 -35.21937 -33.39260 -33.07738 -32.01289 -31.02105 -28.97869 -26.56115 -25.13044 -23.82802 -22.20199 -21.37194 -21.34219 -20.07354 -19.06203 -18.20145 -17.48479 -17.30568 -17.07329 -16.90746 -16.60595 -16.21806 -15.93437 -15.76633 -15.56613 -14.97126 -14.88315 -14.72059 -14.41015 -14.32811 -13.89380 -13.65182 -13.54657 -13.30410 -12.92755 -12.78149 -12.59481 -12.46422 -12.45777 -12.12828 -11.98486 -11.75568 -11.57026 -11.22455 -10.90652 -10.55597 -10.16307 -10.06885 -10.02203 -9.60740 -8.51202 -6.01533 0.06830 0.31224 1.14761 1.36423 1.43004 1.55545 1.67521 1.91428 2.05292 2.32149 2.59921 3.13807 3.16017 3.50713 3.53927 3.74015 3.79925 3.94621 4.09617 4.19275 4.30425 4.36049 4.41169 4.45930 4.50056 4.66906 4.68415 4.86291 5.00273 5.18829 5.24400 5.32154 5.38761 5.51608 5.78379 5.91788 6.46420 6.58614 6.83342 7.03326 7.25159 7.44806 7.94239 8.65602 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.030573 B = 0.001803 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.627341 B =15526.149349 C =16050.765844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.121 3.879 13 N -0.711 5.711 14 C 0.511 3.489 15 O -0.570 6.570 16 C -0.160 4.160 17 C 0.172 3.828 18 H 0.101 0.899 19 O -0.559 6.559 20 C -0.115 4.115 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.047 4.047 24 Cl -0.076 7.076 25 C -0.113 4.113 26 C -0.099 4.099 27 H 0.280 0.720 28 H 0.398 0.602 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.414 0.586 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.383 0.617 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -25.183 -0.031 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.366 5.366 14 C 0.299 3.701 15 O -0.449 6.449 16 C -0.200 4.200 17 C 0.113 3.887 18 H 0.119 0.881 19 O -0.366 6.366 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.133 4.133 23 C -0.073 4.073 24 Cl -0.047 7.047 25 C -0.131 4.131 26 C -0.117 4.117 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.252 0.748 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.232 0.768 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.388 -25.300 0.392 26.359 hybrid contribution 0.694 0.958 -0.256 1.210 sum 8.082 -24.342 0.135 25.649 Atomic orbital electron populations 1.69681 1.07016 1.29625 1.49282 1.26139 0.96541 1.02719 0.95801 0.84861 0.77911 0.76473 0.78703 1.19566 1.19711 1.19416 1.19742 0.92980 0.83561 1.50405 0.89516 1.41866 1.09589 1.04688 1.63437 1.20463 0.88142 0.85951 0.83472 1.90468 1.15128 1.87570 1.58043 1.20730 0.91859 0.84136 1.03942 1.45791 1.11210 1.04662 1.74925 1.21109 0.89934 0.83832 0.75192 1.90729 1.18435 1.85031 1.50749 1.22458 0.98089 0.91470 1.07934 1.20395 0.90939 0.88559 0.88842 0.88099 1.86754 1.38087 1.95971 1.15837 1.20636 0.98080 0.98136 0.94665 1.21218 0.97669 0.95048 0.97915 1.21252 0.96159 0.97424 0.98495 1.21179 0.96284 0.93623 0.96224 1.98378 1.60371 1.47639 1.98284 1.21252 0.99045 0.96238 0.96602 1.21131 0.94890 0.96265 0.99372 0.91086 0.76755 0.89146 0.89091 0.74830 0.85608 0.85740 0.76751 0.83477 0.83606 0.83397 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.36 13.05 21.66 0.28 -48.07 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.33 29.55 68.60 2.03 43.35 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.34 -18.40 9.68 84.04 0.81 -17.59 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.81 5.29 -306.99 -1.62 -29.44 16 10 C 0.43 19.52 7.85 87.66 0.69 20.21 16 11 O -0.62 -31.39 15.24 -3.07 -0.05 -31.44 16 12 C 0.12 4.29 6.15 85.63 0.53 4.82 16 13 N -0.71 -21.33 5.53 -466.78 -2.58 -23.91 16 14 C 0.51 13.87 7.71 87.66 0.68 14.55 16 15 O -0.57 -19.93 15.42 10.76 0.17 -19.76 16 16 C -0.16 -2.63 5.36 29.85 0.16 -2.47 16 17 C 0.17 2.98 2.75 29.85 0.08 3.06 16 18 H 0.10 2.06 7.82 -2.39 -0.02 2.04 16 19 O -0.56 -11.44 12.42 -135.20 -1.68 -13.11 16 20 C -0.11 -1.58 4.97 -19.86 -0.10 -1.68 16 21 C -0.10 -1.32 9.67 22.27 0.22 -1.10 16 22 C -0.11 -1.51 9.83 22.29 0.22 -1.29 16 23 C -0.05 -0.65 6.32 22.32 0.14 -0.51 16 24 Cl -0.08 -1.06 28.96 -2.72 -0.08 -1.14 16 25 C -0.11 -1.38 9.83 22.29 0.22 -1.16 16 26 C -0.10 -1.13 9.32 22.26 0.21 -0.92 16 27 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 31 H 0.41 12.01 7.44 -92.71 -0.69 11.32 16 32 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.38 4.60 7.50 -74.06 -0.56 4.04 16 35 H 0.15 1.49 8.04 -2.91 -0.02 1.47 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.15 0.99 6.79 -2.91 -0.02 0.97 16 Total: -1.00 -70.22 351.36 -0.05 -70.27 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.83 Total: 37.47 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 4.32 Total: 15.79 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.92 Total: -101.42 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -1.56 Total: -64.32 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -70.22 -0.05 -70.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.695 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds