Wall clock time and date at job start Tue Mar 31 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48502 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47148 * 299.99838 * 3 2 1 6 6 H 1.48502 * 109.47066 * 59.99858 * 3 2 1 7 7 C 1.38798 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99752 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46657 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00465 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99464 * 179.97438 * 11 10 9 14 14 C 1.47077 * 120.87727 * 179.97438 * 13 11 10 15 15 C 1.53249 * 108.52327 * 231.20682 * 14 13 11 16 16 N 1.46894 * 109.33841 * 306.17303 * 15 14 13 17 17 C 1.39155 * 111.00218 * 187.24841 * 16 15 14 18 18 C 1.39205 * 120.06733 * 179.97438 * 17 16 15 19 19 N 1.32003 * 119.93255 * 180.02562 * 18 17 16 20 20 C 1.32399 * 120.06013 * 0.02562 * 19 18 17 21 21 F 1.35099 * 119.93976 * 180.02562 * 20 19 18 22 22 C 1.38474 * 120.11887 * 359.97438 * 20 19 18 23 23 N 1.32211 * 120.06701 * 359.97438 * 22 20 19 24 24 C 1.46902 * 111.26833 * 63.10271 * 16 15 14 25 25 C 1.47080 * 120.88191 * 0.02562 * 13 11 10 26 26 H 0.97002 * 119.99944 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47104 * 59.99894 * 10 9 7 28 28 H 1.08996 * 109.46532 * 299.99996 * 10 9 7 29 29 H 1.09003 * 109.62730 * 111.50400 * 14 13 11 30 30 H 1.08994 * 109.63264 * 350.91865 * 14 13 11 31 31 H 1.08996 * 109.49361 * 186.21492 * 15 14 13 32 32 H 1.08993 * 109.48624 * 66.13280 * 15 14 13 33 33 H 1.08006 * 120.03202 * 0.02562 * 18 17 16 34 34 H 1.08001 * 119.96322 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.49416 * 56.85742 * 24 16 15 36 36 H 1.09005 * 109.49635 * 176.93357 * 24 16 15 37 37 H 1.09004 * 109.62530 * 248.49735 * 25 13 11 38 38 H 1.09001 * 109.63244 * 9.08164 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8915 -0.0013 11 6 1.9874 -5.3027 -0.0018 12 8 0.7911 -5.5023 -0.0019 13 7 2.8442 -6.3431 -0.0020 14 6 2.3496 -7.7282 -0.0018 15 6 3.0436 -8.4928 1.1306 16 7 4.4992 -8.3530 0.9913 17 6 5.1677 -9.1646 1.9027 18 6 6.5594 -9.1792 1.9338 19 7 7.1908 -9.9506 2.7991 20 6 6.5018 -10.7101 3.6365 21 9 7.1505 -11.4983 4.5215 22 6 5.1174 -10.6974 3.6076 23 7 4.4800 -9.9260 2.7435 24 6 4.9156 -6.9511 1.1306 25 6 4.2985 -6.1234 -0.0012 26 1 -0.4850 0.8401 -0.0004 27 1 3.1238 -3.7317 0.8892 28 1 3.1251 -3.7309 -0.8908 29 1 2.5807 -8.1996 -0.9571 30 1 1.2719 -7.7322 0.1605 31 1 2.7727 -9.5472 1.0769 32 1 2.7292 -8.0845 2.0910 33 1 7.1219 -8.5600 1.2506 34 1 4.5579 -11.3177 4.2921 35 1 4.5753 -6.5643 2.0911 36 1 6.0025 -6.8874 1.0769 37 1 4.7171 -6.4403 -0.9565 38 1 4.5091 -5.0663 0.1615 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093144416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:53 Heat of formation + Delta-G solvation = 2.281514 kcal Electronic energy + Delta-G solvation = -24369.320479 eV Core-core repulsion = 20481.913902 eV Total energy + Delta-G solvation = -3887.406578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.48931 -41.85372 -40.01637 -38.12403 -35.28125 -34.44624 -32.47438 -32.00439 -30.80518 -29.29898 -27.11565 -25.88108 -25.49839 -23.86252 -23.61208 -21.66681 -19.40214 -18.67048 -18.56275 -18.14999 -17.52861 -16.79770 -16.50362 -15.80864 -15.69562 -15.54417 -15.26404 -15.02225 -14.84697 -14.63479 -14.14358 -14.11936 -13.97205 -13.39994 -13.28064 -12.84859 -12.56721 -12.26488 -12.01467 -11.89438 -11.74071 -11.65892 -11.59150 -11.10764 -11.06412 -10.79396 -10.57059 -9.84745 -9.81916 -9.47391 -9.11904 -8.82579 -8.60302 -8.28186 -6.55779 -6.26244 -3.97414 0.08446 0.42945 2.56459 2.85053 2.89651 2.93294 3.05589 3.18396 3.22051 3.27640 3.50385 3.60073 3.73750 4.15252 4.25835 4.35710 4.49351 4.52634 4.73674 4.82936 4.88634 4.91487 5.05978 5.09217 5.17176 5.29534 5.45308 5.52661 5.57540 5.69890 5.75673 5.81008 5.99618 6.02660 6.30098 6.44760 6.63536 7.05332 7.40781 7.55256 8.30556 8.43620 9.19247 10.81191 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.002343 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.726235 B =11947.754094 C =12620.733002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.512 6.512 13 N -0.626 5.626 14 C 0.115 3.885 15 C 0.051 3.949 16 N -0.465 5.465 17 C 0.260 3.740 18 C 0.081 3.919 19 N -0.446 5.446 20 C 0.219 3.781 21 F -0.104 7.104 22 C 0.074 3.926 23 N -0.451 5.451 24 C 0.040 3.960 25 C 0.114 3.886 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.183 0.817 34 H 0.183 0.817 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.864 -20.630 3.975 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.386 6.386 13 N -0.363 5.363 14 C -0.008 4.008 15 C -0.077 4.077 16 N -0.182 5.182 17 C 0.025 3.975 18 C -0.085 4.085 19 N -0.165 5.165 20 C 0.064 3.936 21 F -0.084 7.084 22 C -0.088 4.088 23 N -0.170 5.170 24 C -0.086 4.086 25 C -0.010 4.010 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.200 0.800 34 H 0.200 0.800 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.995 -20.943 3.511 24.389 hybrid contribution 2.094 1.179 0.861 2.553 sum 14.089 -19.764 4.372 24.663 Atomic orbital electron populations 1.70025 1.05964 1.27408 1.46807 1.25001 0.95035 0.99073 0.94501 0.86113 0.79563 0.81855 0.77937 1.19600 1.20533 1.20570 1.22884 0.94892 0.91548 1.59000 0.90863 1.85451 1.04839 0.96407 1.96698 1.23559 1.06643 0.95292 1.04719 1.20366 0.86191 0.86139 0.74851 1.90703 1.15116 1.85130 1.47657 1.48208 1.06197 1.05931 1.75969 1.21696 1.00419 0.80717 0.97956 1.22533 0.83487 1.02484 0.99173 1.59129 1.08756 1.07833 1.42527 1.20971 0.91956 0.95066 0.89485 1.23139 0.90818 0.97682 0.96877 1.67718 1.40702 1.04636 1.03479 1.18998 0.88923 0.94013 0.91701 1.91654 1.82308 1.70179 1.64229 1.23457 0.90482 0.97460 0.97441 1.68480 1.38762 1.06881 1.02874 1.22831 1.01538 0.84294 0.99979 1.21810 0.80225 1.00747 0.98248 0.92191 0.89296 0.89086 0.90788 0.87814 0.88216 0.92181 0.79989 0.80012 0.92202 0.88284 0.90034 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.89 4.52 36.00 0.16 -2.72 16 11 C 0.54 9.54 7.73 -10.99 -0.08 9.45 16 12 O -0.51 -11.18 15.31 5.56 0.09 -11.09 16 13 N -0.63 -8.00 3.01 -172.48 -0.52 -8.51 16 14 C 0.12 1.27 6.60 -3.60 -0.02 1.25 16 15 C 0.05 0.48 4.83 -3.70 -0.02 0.46 16 16 N -0.46 -3.91 4.66 -172.78 -0.81 -4.71 16 17 C 0.26 2.24 6.40 -154.63 -0.99 1.25 16 18 C 0.08 0.62 10.32 -17.12 -0.18 0.45 16 19 N -0.45 -4.25 10.50 -13.24 -0.14 -4.39 16 20 C 0.22 1.94 8.43 -17.22 -0.15 1.79 16 21 F -0.10 -0.93 17.29 2.25 0.04 -0.89 16 22 C 0.07 0.56 11.20 -17.30 -0.19 0.37 16 23 N -0.45 -4.10 8.85 -12.16 -0.11 -4.21 16 24 C 0.04 0.30 5.42 -3.72 -0.02 0.28 16 25 C 0.11 1.02 6.50 -3.62 -0.02 0.99 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.09 1.54 7.66 -51.92 -0.40 1.14 16 28 H 0.09 1.58 8.00 -51.92 -0.42 1.17 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.31 7.06 -51.93 -0.37 0.94 16 31 H 0.10 0.89 7.66 -51.93 -0.40 0.49 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.18 0.90 7.15 -52.48 -0.38 0.52 16 34 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.46 6.65 -51.93 -0.35 0.12 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.90 6.02 -51.93 -0.31 0.59 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -34.74 338.17 -8.44 -43.18 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.27 Total: -2.60 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.01 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.84 Total: -46.80 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.74 -8.44 -43.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093144416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.460 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds