Wall clock time and date at job start Tue Mar 31 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 119.99769 * 2 1 4 4 H 1.48501 * 109.46900 * 270.00053 * 3 2 1 5 5 H 1.48496 * 109.47255 * 29.99974 * 3 2 1 6 6 H 1.48497 * 109.47113 * 150.00185 * 3 2 1 7 7 C 1.38796 * 120.00549 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00518 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99748 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00155 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47258 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00278 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00244 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.31000 * 119.99878 * 124.99925 * 15 14 13 17 17 C 1.50709 * 120.00020 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.46997 * 125.00258 * 17 16 15 19 19 C 1.39120 * 119.99613 * 179.97438 * 18 17 16 20 20 N 1.32565 * 120.11105 * 0.02562 * 19 18 17 21 21 C 1.32302 * 119.94309 * 180.02562 * 20 19 18 22 22 C 1.38065 * 120.16575 * 359.97272 * 21 20 19 23 23 N 1.32341 * 120.22628 * 0.02657 * 22 21 20 24 24 C 1.32077 * 120.04982 * 359.97438 * 23 22 21 25 25 F 1.35107 * 120.08192 * 180.02562 * 24 23 22 26 26 H 0.97000 * 120.00054 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47386 * 59.99725 * 10 9 7 28 28 H 1.09000 * 109.46559 * 300.00115 * 10 9 7 29 29 H 0.96999 * 119.99469 * 359.97438 * 13 11 10 30 30 H 1.08996 * 109.47067 * 59.99779 * 14 13 11 31 31 H 1.09005 * 109.47211 * 300.00092 * 14 13 11 32 32 H 1.08002 * 120.00507 * 305.00050 * 15 14 13 33 33 H 1.07995 * 120.00003 * 0.02562 * 16 15 14 34 34 H 1.09000 * 109.46736 * 4.99953 * 17 16 15 35 35 H 1.09005 * 109.46716 * 245.00369 * 17 16 15 36 36 H 0.96996 * 120.00508 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.91885 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.88650 * 179.74744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9876 -5.3027 -0.0030 12 8 0.7913 -5.5023 -0.0040 13 7 2.8444 -6.3431 -0.0035 14 6 2.3307 -7.7150 -0.0045 15 6 3.4852 -8.6836 -0.0055 16 6 3.5688 -9.6038 0.9231 17 6 4.7236 -10.5722 0.9226 18 7 5.4010 -10.5251 2.2206 19 6 6.5045 -11.3379 2.4592 20 7 6.9452 -12.1555 1.5133 21 6 7.9947 -12.9274 1.7439 22 6 8.6328 -12.8833 2.9675 23 7 8.1985 -12.0696 3.9165 24 6 7.1516 -11.2952 3.6957 25 9 6.7079 -10.4639 4.6639 26 1 -0.4850 0.8400 -0.0004 27 1 3.1240 -3.7317 0.8891 28 1 3.1253 -3.7308 -0.8908 29 1 3.8011 -6.1834 -0.0031 30 1 1.7224 -7.8745 -0.8947 31 1 1.7218 -7.8757 0.8852 32 1 4.2436 -8.6192 -0.7716 33 1 2.8102 -9.6686 1.6891 34 1 5.4265 -10.2988 0.1357 35 1 4.3517 -11.5810 0.7431 36 1 5.0801 -9.9272 2.9138 37 1 8.3531 -13.5936 0.9732 38 1 9.4866 -13.5184 3.1523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107049576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:05 Heat of formation + Delta-G solvation = -33.906399 kcal Electronic energy + Delta-G solvation = -22641.208311 eV Core-core repulsion = 18752.232507 eV Total energy + Delta-G solvation = -3888.975803 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.08372 -41.91745 -40.63006 -38.22928 -36.62729 -35.00683 -34.59003 -34.04075 -31.65110 -30.63058 -28.34216 -27.63389 -25.86686 -24.93137 -23.76262 -21.89007 -20.99596 -19.84149 -19.49341 -19.04377 -18.53113 -17.83030 -17.49604 -17.40384 -16.88390 -16.70888 -16.29675 -15.86014 -15.78381 -15.66622 -15.08758 -14.98110 -14.87485 -14.57525 -14.44032 -14.27183 -13.81903 -13.60756 -13.18113 -13.17167 -12.89042 -12.72667 -12.62910 -12.46559 -12.18410 -11.73491 -11.31258 -11.14783 -11.07763 -10.53397 -10.29007 -10.27156 -10.02558 -8.90009 -8.67343 -8.35186 -6.13367 -0.25792 0.08429 0.77858 1.28873 1.42170 1.48145 1.58575 1.59335 1.97907 2.26620 2.41070 2.47949 2.60230 2.99000 3.22466 3.25606 3.32310 3.59247 3.97719 4.00848 4.05837 4.25506 4.28498 4.34173 4.50525 4.50730 4.55257 4.57111 4.67699 4.82154 5.18801 5.33937 5.41533 5.52846 5.63183 5.83189 5.89644 6.19375 6.37304 6.48621 6.77496 7.06196 7.22133 8.73996 Molecular weight = 326.10amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.001678 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.961810 B =16684.486584 C =17535.734246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.710 5.710 14 C 0.145 3.855 15 C -0.136 4.136 16 C -0.152 4.152 17 C 0.168 3.832 18 N -0.705 5.705 19 C 0.346 3.654 20 N -0.494 5.494 21 C 0.110 3.890 22 C 0.013 3.987 23 N -0.460 5.460 24 C 0.163 3.837 25 F -0.120 7.120 26 H 0.271 0.729 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.417 0.583 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.419 0.581 37 H 0.221 0.779 38 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.903 -29.325 1.848 35.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.022 3.978 15 C -0.155 4.155 16 C -0.172 4.172 17 C 0.045 3.955 18 N -0.338 5.338 19 C 0.104 3.896 20 N -0.218 5.218 21 C -0.051 4.051 22 C -0.148 4.148 23 N -0.179 5.179 24 C 0.000 4.000 25 F -0.100 7.100 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.254 0.746 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.257 0.743 37 H 0.237 0.763 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 17.623 -29.545 1.695 34.443 hybrid contribution 1.470 1.790 0.665 2.410 sum 19.093 -27.754 2.360 33.770 Atomic orbital electron populations 1.70181 1.07962 1.28615 1.47975 1.26127 0.95969 1.03318 0.93735 0.84953 0.78188 0.76031 0.78805 1.19272 1.20319 1.18232 1.23209 0.95368 0.92010 1.58900 0.89882 1.85574 1.10602 0.99268 1.97060 1.23377 1.03555 0.94329 1.06867 1.20072 0.86212 0.86703 0.75104 1.90697 1.17450 1.86096 1.50228 1.45719 1.10380 1.04798 1.75505 1.20393 0.95502 0.79467 1.02395 1.22855 0.98137 0.94701 0.99811 1.22933 0.98471 0.96376 0.99371 1.20318 0.91816 0.99154 0.84196 1.44637 1.28710 1.42696 1.17787 1.19115 0.89732 0.91934 0.88828 1.68203 1.15850 1.07696 1.30053 1.24305 0.88559 0.94122 0.98104 1.23899 1.03014 0.98415 0.89488 1.67606 1.09842 1.04559 1.35904 1.18553 0.97485 0.97682 0.86327 1.91585 1.87523 1.68474 1.62380 0.91985 0.87235 0.87075 0.74590 0.91140 0.91756 0.84410 0.85901 0.90409 0.90100 0.74275 0.76289 0.77224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.52 29.55 68.60 2.03 45.54 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 10 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 11 C 0.53 19.14 7.85 87.66 0.69 19.83 16 12 O -0.57 -25.87 15.86 -3.04 -0.05 -25.92 16 13 N -0.71 -16.62 5.55 -466.81 -2.59 -19.21 16 14 C 0.15 2.85 6.11 85.63 0.52 3.38 16 15 C -0.14 -1.59 9.24 25.65 0.24 -1.35 16 16 C -0.15 -1.56 9.24 25.65 0.24 -1.33 16 17 C 0.17 1.69 6.16 85.64 0.53 2.22 16 18 N -0.70 -8.92 5.70 -348.13 -1.99 -10.91 16 19 C 0.35 5.37 7.50 133.09 1.00 6.37 16 20 N -0.49 -6.46 9.73 -192.42 -1.87 -8.33 16 21 C 0.11 0.76 11.21 84.58 0.95 1.71 16 22 C 0.01 0.11 11.21 84.58 0.95 1.06 16 23 N -0.46 -8.01 10.50 -195.79 -2.06 -10.06 16 24 C 0.16 3.03 8.47 84.99 0.72 3.75 16 25 F -0.12 -2.45 16.68 44.97 0.75 -1.70 16 26 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 27 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 28 H 0.11 3.85 8.14 -2.40 -0.02 3.84 16 29 H 0.42 6.93 8.46 -92.71 -0.78 6.14 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.40 7.79 -2.38 -0.02 1.38 16 32 H 0.14 1.18 7.84 -2.91 -0.02 1.16 16 33 H 0.12 1.27 7.84 -2.91 -0.02 1.24 16 34 H 0.08 0.77 7.79 -2.39 -0.02 0.75 16 35 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.42 4.89 7.95 -92.71 -0.74 4.15 16 37 H 0.22 -0.48 8.06 -2.91 -0.02 -0.50 16 38 H 0.21 0.15 8.06 -2.91 -0.02 0.12 16 Total: -1.00 -82.47 359.29 0.32 -82.15 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.40 Total: 11.99 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 7.38 Total: 1.70 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -8.22 Total: -104.17 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.75 Total: -1.70 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -82.47 0.32 -82.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107049576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.242 kcal (2) G-P(sol) polarization free energy of solvation -82.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds