Wall clock time and date at job start Tue Mar 31 2020 04:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33820 * 124.52163 * 2 1 4 4 C 1.37477 * 115.09999 * 179.70441 * 3 2 1 5 5 C 1.36649 * 113.29710 * 0.48708 * 4 3 2 6 6 C 1.46576 * 125.45678 * 179.80414 * 5 4 3 7 7 O 1.21704 * 120.00049 * 359.71758 * 6 5 4 8 8 N 1.34777 * 119.99910 * 179.72343 * 6 5 4 9 9 C 1.46506 * 119.99873 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46928 * 179.97438 * 9 8 6 11 11 O 1.20828 * 120.00000 * 359.97438 * 10 9 8 12 12 O 1.34231 * 120.00154 * 179.97438 * 10 9 8 13 13 C 1.45196 * 117.00262 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47357 * 180.02562 * 13 12 10 15 15 O 1.21296 * 119.99760 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00377 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99875 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00276 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99538 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99542 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00257 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.46667 * 89.99572 * 21 19 17 23 23 H 1.48493 * 109.47495 * 209.99887 * 21 19 17 24 24 H 1.48504 * 109.47059 * 330.00113 * 21 19 17 25 25 S 1.70621 * 124.52710 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46841 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47897 * 300.00335 * 1 2 3 28 28 H 1.08997 * 109.46998 * 60.00823 * 1 2 3 29 29 H 1.07999 * 122.45174 * 359.94876 * 3 2 1 30 30 H 1.08002 * 123.34967 * 180.29664 * 4 3 2 31 31 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.47073 * 299.99562 * 9 8 6 33 33 H 1.09000 * 109.47212 * 59.99645 * 9 8 6 34 34 H 1.09001 * 109.46943 * 300.00501 * 13 12 10 35 35 H 1.09003 * 109.46752 * 60.00304 * 13 12 10 36 36 H 0.96996 * 119.99466 * 0.02562 * 16 14 13 37 37 H 0.97002 * 119.99714 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8775 0.0064 5 6 3.9493 -0.4491 0.0010 6 6 5.3123 -0.9882 0.0017 7 8 6.2658 -0.2319 0.0022 8 7 5.5096 -2.3214 0.0016 9 6 6.8720 -2.8603 0.0028 10 6 6.8165 -4.3662 0.0031 11 8 5.7486 -4.9314 0.0028 12 8 7.9534 -5.0798 0.0036 13 6 7.8241 -6.5259 0.0044 14 6 9.1945 -7.1529 0.0056 15 8 10.1830 -6.4499 0.0062 16 7 9.3218 -8.4946 0.0060 17 6 10.5686 -9.0648 0.0065 18 1 11.4487 -8.4389 0.0071 19 6 10.6998 -10.4482 0.0074 20 7 11.8948 -10.9947 0.0084 21 14 9.1775 -11.5308 0.0072 22 1 8.7750 -11.8184 -1.3931 23 1 9.4764 -12.8053 0.7081 24 1 8.0710 -10.8291 0.7061 25 16 2.4740 -1.4057 0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8429 2.0965 -0.0008 30 1 4.3549 1.6703 0.0119 31 1 4.7496 -2.9242 0.0015 32 1 7.3997 -2.5159 -0.8866 33 1 7.3980 -2.5162 0.8934 34 1 7.2798 -6.8415 0.8945 35 1 7.2801 -6.8425 -0.8855 36 1 8.5314 -9.0567 0.0051 37 1 11.9864 -11.9604 0.0087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116015774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:40 Heat of formation + Delta-G solvation = -142.240276 kcal Electronic energy + Delta-G solvation = -23365.319786 eV Core-core repulsion = 19426.980732 eV Total energy + Delta-G solvation = -3938.339053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.98198 -40.86374 -40.17190 -38.76190 -37.78272 -36.10107 -35.80754 -33.87642 -33.09214 -31.02809 -29.62475 -27.70096 -26.32885 -24.53556 -22.93950 -22.13365 -21.56266 -20.70534 -20.54221 -19.34063 -18.52807 -18.16411 -18.08312 -17.38976 -17.04240 -16.72756 -16.65009 -16.49596 -15.85511 -15.75315 -15.18259 -14.93462 -14.77502 -14.58685 -14.42705 -14.22323 -13.99925 -13.68560 -13.61924 -13.33324 -13.00695 -12.94571 -12.73722 -12.46271 -12.01667 -11.95390 -11.92392 -11.89334 -11.59190 -11.43793 -10.62676 -10.56695 -10.34773 -9.66681 -9.58006 -8.46292 -6.09835 -0.56739 0.42180 0.85203 0.86117 0.97616 1.30215 1.31994 1.33844 1.44690 1.75216 2.00284 2.05014 2.20372 2.73254 3.08046 3.41078 3.67897 3.85655 3.88215 4.08290 4.09122 4.15757 4.25078 4.26076 4.37339 4.68232 4.75086 4.87445 5.05215 5.08745 5.12404 5.17539 5.40160 5.46603 5.84873 6.13680 6.34963 6.50474 6.76811 6.85400 7.24897 7.77185 8.70298 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.001939 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.724687 B =14433.813270 C =15351.787371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.182 4.182 3 C -0.169 4.169 4 C -0.043 4.043 5 C -0.310 4.310 6 C 0.598 3.402 7 O -0.562 6.562 8 N -0.715 5.715 9 C 0.132 3.868 10 C 0.468 3.532 11 O -0.518 6.518 12 O -0.338 6.338 13 C 0.069 3.931 14 C 0.446 3.554 15 O -0.609 6.609 16 N -0.574 5.574 17 C -0.335 4.335 18 H 0.060 0.940 19 C -0.009 4.009 20 N -0.926 5.926 21 Si 0.963 3.037 22 H -0.255 1.255 23 H -0.273 1.273 24 H -0.229 1.229 25 S 0.223 5.777 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.168 0.832 30 H 0.153 0.847 31 H 0.414 0.586 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.394 0.606 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.268 19.481 0.005 35.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.302 4.302 3 C -0.199 4.199 4 C -0.078 4.078 5 C -0.430 4.430 6 C 0.387 3.613 7 O -0.442 6.442 8 N -0.371 5.371 9 C 0.007 3.993 10 C 0.311 3.689 11 O -0.407 6.407 12 O -0.252 6.252 13 C -0.008 4.008 14 C 0.233 3.767 15 O -0.494 6.494 16 N -0.216 5.216 17 C -0.463 4.463 18 H 0.078 0.922 19 C -0.209 4.209 20 N -0.565 5.565 21 Si 0.782 3.218 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.152 1.152 25 S 0.491 5.509 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.186 0.814 30 H 0.170 0.830 31 H 0.253 0.747 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.230 0.770 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.387 18.493 0.008 34.721 hybrid contribution 0.140 0.229 0.004 0.269 sum -29.247 18.722 0.012 34.726 Atomic orbital electron populations 1.20571 0.85122 1.04281 1.04799 1.24765 1.03087 0.97179 1.05178 1.20155 0.91713 1.01056 1.06949 1.20974 0.97309 0.94717 0.94771 1.24325 0.96414 0.99167 1.23079 1.17105 0.87711 0.81199 0.75284 1.90842 1.43081 1.58587 1.51723 1.45554 1.08569 1.06898 1.76113 1.20694 0.85635 0.84773 1.08156 1.23653 0.81669 0.91613 0.71921 1.90646 1.30793 1.72647 1.46620 1.86529 1.34931 1.20617 1.83158 1.22689 0.94625 0.76661 1.06842 1.20223 0.90869 0.82608 0.83012 1.90601 1.41465 1.62190 1.55159 1.41789 1.07792 1.05292 1.66759 1.19003 0.84479 0.91645 1.51212 0.92219 1.26123 1.01529 0.97689 0.95531 1.69788 1.24930 1.12803 1.48981 0.85398 0.77885 0.78324 0.80177 1.17899 1.19802 1.15242 1.83103 0.92923 1.07404 1.67509 0.90437 0.88697 0.88689 0.81411 0.82979 0.74739 0.85378 0.85393 0.86024 0.85922 0.77003 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.33 71.23 0.74 0.35 16 2 C -0.18 -1.88 6.28 24.68 0.15 -1.73 16 3 C -0.17 -1.93 10.00 21.09 0.21 -1.72 16 4 C -0.04 -0.71 10.01 21.72 0.22 -0.49 16 5 C -0.31 -5.79 6.45 24.07 0.16 -5.63 16 6 C 0.60 13.87 7.78 86.42 0.67 14.54 16 7 O -0.56 -16.58 16.84 -4.36 -0.07 -16.65 16 8 N -0.72 -14.64 5.52 -470.90 -2.60 -17.24 16 9 C 0.13 2.77 6.27 85.63 0.54 3.30 16 10 C 0.47 11.75 8.03 71.24 0.57 12.32 16 11 O -0.52 -13.51 15.42 21.96 0.34 -13.17 16 12 O -0.34 -10.69 9.75 -45.07 -0.44 -11.13 16 13 C 0.07 2.13 5.94 71.23 0.42 2.56 16 14 C 0.45 19.96 7.86 87.66 0.69 20.64 16 15 O -0.61 -34.07 16.08 15.72 0.25 -33.82 16 16 N -0.57 -26.28 5.09 -306.98 -1.56 -27.84 16 17 C -0.33 -19.13 10.16 84.04 0.85 -18.28 16 18 H 0.06 4.08 7.39 -2.91 -0.02 4.05 16 19 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 20 N -0.93 -54.34 13.96 21.66 0.30 -54.04 16 21 Si 0.96 37.12 27.74 68.60 1.90 39.02 16 22 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.23 -7.34 6.52 99.48 0.65 -6.69 16 25 S 0.22 2.90 22.08 -56.49 -1.25 1.65 16 26 H 0.08 0.26 8.11 -2.39 -0.02 0.24 16 27 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.41 7.67 6.55 -92.71 -0.61 7.06 16 32 H 0.13 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.12 3.08 8.13 -2.39 -0.02 3.06 16 35 H 0.12 3.08 8.13 -2.39 -0.02 3.06 16 36 H 0.39 14.56 5.76 -92.71 -0.53 14.03 16 37 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -80.27 348.89 2.51 -77.76 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.05 Total: 29.59 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 5.69 Total: 25.86 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -3.86 Total: -99.12 kcal Atomic # 8 Polarization: -74.85 SS G_CDS: 0.08 Total: -74.77 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 1.90 Total: 39.02 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.25 Total: 1.65 kcal Total: -80.27 2.51 -77.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116015774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.476 kcal (2) G-P(sol) polarization free energy of solvation -80.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds