Wall clock time and date at job start Tue Mar 31 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 110.54499 * 2 1 4 4 O 1.42101 * 110.54077 * 223.25419 * 2 1 3 5 5 C 1.76201 * 104.45013 * 111.62671 * 2 1 3 6 6 C 1.37979 * 120.07330 * 115.00120 * 5 2 1 7 7 C 1.38333 * 120.14317 * 180.29806 * 6 5 2 8 8 C 1.38384 * 120.29484 * 359.44604 * 7 6 5 9 9 C 1.37944 * 120.14024 * 0.55081 * 8 7 6 10 10 C 1.39558 * 120.07151 * 295.02060 * 5 2 1 11 11 C 1.47846 * 120.14497 * 359.95499 * 10 5 2 12 12 O 1.21549 * 120.00076 * 359.97438 * 11 10 5 13 13 N 1.34783 * 119.99584 * 179.97438 * 11 10 5 14 14 C 1.46505 * 119.99616 * 179.97438 * 13 11 10 15 15 C 1.50693 * 109.46883 * 180.02562 * 14 13 11 16 16 O 1.21296 * 120.00074 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00027 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00176 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00049 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00080 * 179.97438 * 18 17 15 21 21 N 1.31419 * 119.99868 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00080 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47332 * 59.99577 * 22 20 18 24 24 H 1.48501 * 109.47115 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46878 * 299.99806 * 22 20 18 26 26 H 1.09001 * 109.46794 * 308.37404 * 1 2 3 27 27 H 1.09004 * 109.47219 * 68.36911 * 1 2 3 28 28 H 1.08990 * 109.47102 * 188.37495 * 1 2 3 29 29 H 1.08002 * 119.92518 * 0.02562 * 6 5 2 30 30 H 1.08003 * 119.85318 * 179.69885 * 7 6 5 31 31 H 1.08000 * 119.93041 * 180.27617 * 8 7 6 32 32 H 1.07996 * 120.07038 * 179.75028 * 9 8 7 33 33 H 0.96995 * 119.99949 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47351 * 300.00409 * 14 13 11 35 35 H 1.09005 * 109.46786 * 60.00226 * 14 13 11 36 36 H 0.97005 * 119.99525 * 359.97438 * 17 15 14 37 37 H 0.96995 * 119.99573 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5862 6 6 2.9149 -1.8352 1.6927 7 6 3.2553 -2.3332 2.9375 8 6 2.9459 -1.6209 4.0829 9 6 2.2851 -0.4136 3.9903 10 6 1.9335 0.0919 2.7375 11 6 1.2256 1.3855 2.6308 12 8 0.9216 1.8236 1.5385 13 7 0.9175 2.0789 3.7447 14 6 0.2165 3.3610 3.6390 15 6 -0.0060 3.9270 5.0177 16 8 0.3832 3.3195 5.9928 17 7 -0.6374 5.1084 5.1674 18 6 -0.8393 5.6236 6.4217 19 1 -0.4927 5.0827 7.2900 20 6 -1.4897 6.8417 6.5760 21 7 -1.9109 7.5001 5.5195 22 14 -1.7654 7.5434 8.2851 23 1 -0.4553 7.7492 8.9531 24 1 -2.4765 8.8427 8.1780 25 1 -2.5844 6.5959 9.0830 26 1 -0.3633 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3633 -1.0166 0.1497 29 1 3.1633 -2.3939 0.8024 30 1 3.7685 -3.2803 3.0157 31 1 3.2184 -2.0131 5.0515 32 1 2.0406 0.1395 4.8851 33 1 1.1605 1.7294 4.6163 34 1 0.8177 4.0567 3.0536 35 1 -0.7451 3.2099 3.1483 36 1 -0.9482 5.5943 4.3876 37 1 -2.3646 8.3506 5.6273 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117274339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:01 Heat of formation + Delta-G solvation = -121.570469 kcal Electronic energy + Delta-G solvation = -25140.618679 eV Core-core repulsion = 21203.175936 eV Total energy + Delta-G solvation = -3937.442743 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64035 -40.23722 -39.40237 -37.86879 -36.80689 -36.32006 -35.52027 -33.40622 -32.63169 -32.33329 -30.23369 -29.27601 -26.62959 -24.86300 -24.12163 -21.79018 -21.47137 -20.31954 -19.91840 -19.38534 -18.20732 -17.44548 -17.38775 -16.97480 -16.94396 -16.75338 -16.51903 -16.07913 -15.92846 -15.76294 -15.56823 -15.43105 -14.62980 -14.07983 -14.02572 -13.93351 -13.87281 -13.54462 -13.38729 -13.25136 -12.97397 -12.91579 -12.75638 -12.64239 -12.47241 -12.14236 -11.97444 -11.59622 -11.56487 -11.12963 -10.57921 -10.46547 -10.33360 -10.12411 -10.06072 -8.51413 -6.01729 -0.79118 -0.53445 -0.00527 1.37774 1.42954 1.53453 1.60180 1.82301 1.89988 1.99629 2.29653 2.50286 2.97710 3.08105 3.16060 3.31720 3.49712 3.73292 3.94478 4.12128 4.16407 4.18194 4.26255 4.40221 4.43083 4.45474 4.48718 4.73720 4.88909 4.94974 5.11702 5.20947 5.25494 5.37888 5.70512 5.90598 6.27237 6.47229 6.89668 7.02796 7.43139 7.92904 8.65120 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002852 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.193995 B = 9815.330644 C =10822.678586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.512 3.488 3 O -0.960 6.960 4 O -0.980 6.980 5 C -0.621 4.621 6 C -0.041 4.041 7 C -0.104 4.104 8 C -0.069 4.069 9 C -0.108 4.108 10 C -0.065 4.065 11 C 0.530 3.470 12 O -0.536 6.536 13 N -0.692 5.692 14 C 0.117 3.883 15 C 0.432 3.568 16 O -0.624 6.624 17 N -0.558 5.558 18 C -0.338 4.338 19 H 0.088 0.912 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.996 3.004 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.269 1.269 26 H 0.139 0.861 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.145 0.855 33 H 0.415 0.585 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.399 0.601 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 -20.137 -6.667 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.694 3.306 3 O -0.957 6.957 4 O -0.977 6.977 5 C -0.708 4.708 6 C -0.060 4.060 7 C -0.123 4.123 8 C -0.087 4.087 9 C -0.127 4.127 10 C -0.068 4.068 11 C 0.318 3.682 12 O -0.417 6.417 13 N -0.346 5.346 14 C -0.010 4.010 15 C 0.219 3.781 16 O -0.512 6.512 17 N -0.193 5.193 18 C -0.468 4.468 19 H 0.106 0.894 20 C -0.210 4.210 21 N -0.555 5.555 22 Si 0.819 3.181 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.194 1.194 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.180 0.820 30 H 0.193 0.807 31 H 0.190 0.810 32 H 0.163 0.837 33 H 0.255 0.745 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.234 0.766 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.008 -19.729 -7.422 21.918 hybrid contribution -0.683 0.761 1.416 1.747 sum 5.325 -18.967 -6.006 20.596 Atomic orbital electron populations 1.30220 1.21621 1.12931 1.13520 1.04569 0.79437 0.73227 0.73332 1.93585 1.79004 1.37427 1.85694 1.93492 1.79645 1.62788 1.61781 1.30699 1.13582 1.06606 1.19933 1.21348 0.92048 0.91769 1.00846 1.22005 0.97794 1.01314 0.91190 1.21890 0.93109 0.92461 1.01199 1.21791 0.97436 0.97418 0.96103 1.19424 0.99539 0.92994 0.94882 1.18765 0.79943 0.85208 0.84288 1.90818 1.54437 1.70571 1.25910 1.45476 1.57989 1.21154 1.09971 1.20915 0.99614 0.85990 0.94474 1.20373 0.83548 0.83225 0.90963 1.90467 1.57094 1.61767 1.41883 1.41832 1.50039 1.18204 1.09208 1.19711 1.37105 1.04256 0.85686 0.89433 1.26121 0.95621 0.96115 1.03182 1.69675 1.38542 1.16248 1.31079 0.84938 0.78669 0.77533 0.76931 1.19543 1.19753 1.19359 0.84304 0.83747 0.83269 0.81958 0.80670 0.80970 0.83693 0.74489 0.88486 0.87437 0.76642 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -11.62 10.14 113.37 1.15 -10.47 16 2 S 2.51 63.49 5.14 -56.49 -0.29 63.20 16 3 O -0.96 -33.75 14.84 -118.13 -1.75 -35.50 16 4 O -0.98 -26.65 16.74 -127.65 -2.14 -28.79 16 5 C -0.62 -14.28 5.61 22.53 0.13 -14.15 16 6 C -0.04 -0.71 9.49 22.23 0.21 -0.50 16 7 C -0.10 -1.24 10.04 22.33 0.22 -1.01 16 8 C -0.07 -0.88 10.03 22.23 0.22 -0.66 16 9 C -0.11 -2.07 9.54 22.53 0.21 -1.85 16 10 C -0.06 -1.60 5.86 -20.09 -0.12 -1.71 16 11 C 0.53 15.95 7.35 86.79 0.64 16.58 16 12 O -0.54 -17.88 9.07 20.15 0.18 -17.70 16 13 N -0.69 -21.56 5.48 -469.70 -2.57 -24.13 16 14 C 0.12 4.06 6.15 85.63 0.53 4.58 16 15 C 0.43 19.12 7.85 87.65 0.69 19.81 16 16 O -0.62 -30.77 15.24 -3.08 -0.05 -30.81 16 17 N -0.56 -27.18 5.29 -306.98 -1.62 -28.80 16 18 C -0.34 -18.20 9.68 84.04 0.81 -17.39 16 19 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 20 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 21 N -0.92 -47.93 13.05 21.66 0.28 -47.64 16 22 Si 1.00 40.94 29.55 68.60 2.03 42.97 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 H 0.14 3.02 5.42 -2.39 -0.01 3.01 16 27 H 0.14 2.16 8.14 -2.39 -0.02 2.15 16 28 H 0.15 1.75 8.14 -2.40 -0.02 1.74 16 29 H 0.16 2.34 7.21 -2.91 -0.02 2.32 16 30 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.15 2.56 6.41 -2.91 -0.02 2.54 16 33 H 0.42 12.41 5.47 -92.71 -0.51 11.91 16 34 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 36 H 0.40 18.73 7.90 -92.70 -0.73 17.99 16 37 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -75.65 329.53 -0.85 -76.51 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.09 Total: 37.49 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 5.17 Total: -6.79 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -3.91 Total: -100.58 kcal Atomic # 8 Polarization: -109.04 SS G_CDS: -3.75 Total: -112.80 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 63.49 SS G_CDS: -0.29 Total: 63.20 kcal Total: -75.65 -0.85 -76.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117274339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.065 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds