Wall clock time and date at job start Tue Mar 31 2020 04:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42099 * 108.57771 * 2 1 4 4 O 1.42107 * 108.57795 * 228.97767 * 2 1 3 5 5 C 1.81397 * 101.92143 * 114.48744 * 2 1 3 6 6 C 1.50705 * 109.47127 * 179.97438 * 5 2 1 7 7 O 1.21284 * 119.99784 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99975 * 180.02562 * 6 5 2 9 9 N 1.40101 * 120.00114 * 179.97438 * 8 6 5 10 10 C 1.34769 * 120.00080 * 179.97438 * 9 8 6 11 11 O 1.21550 * 120.00410 * 0.02562 * 10 9 8 12 12 C 1.47891 * 120.00163 * 180.02562 * 10 9 8 13 13 C 1.39922 * 120.02418 * 359.97438 * 12 10 9 14 14 C 1.38327 * 120.36129 * 180.02562 * 13 12 10 15 15 C 1.37755 * 120.40989 * 359.97438 * 14 13 12 16 16 C 1.40752 * 120.04005 * 359.97438 * 15 14 13 17 17 C 1.41428 * 120.17692 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00377 * 24.40154 * 17 16 15 19 19 C 1.39938 * 120.00012 * 204.40976 * 17 16 15 20 20 N 1.30825 * 119.99869 * 17.84278 * 19 17 16 21 21 Si 1.86804 * 120.00158 * 197.84304 * 19 17 16 22 22 H 1.48505 * 109.46701 * 94.69079 * 21 19 17 23 23 H 1.48499 * 109.47242 * 214.69090 * 21 19 17 24 24 H 1.48500 * 109.47130 * 334.69434 * 21 19 17 25 25 C 1.38993 * 120.02833 * 180.02562 * 12 10 9 26 26 H 1.08999 * 109.47276 * 305.51697 * 1 2 3 27 27 H 1.09003 * 109.47142 * 65.51172 * 1 2 3 28 28 H 1.08994 * 109.47219 * 185.50953 * 1 2 3 29 29 H 1.08997 * 109.46996 * 60.00277 * 5 2 1 30 30 H 1.08996 * 109.46980 * 299.99916 * 5 2 1 31 31 H 0.97004 * 120.00107 * 359.97438 * 8 6 5 32 32 H 0.97004 * 119.99662 * 0.02562 * 9 8 6 33 33 H 1.08004 * 119.81783 * 0.02562 * 13 12 10 34 34 H 1.07995 * 119.79422 * 179.97438 * 14 13 12 35 35 H 1.07996 * 119.97814 * 179.97438 * 15 14 13 36 36 H 0.97002 * 120.00058 * 179.97438 * 20 19 17 37 37 H 1.07999 * 120.20071 * 359.71208 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7357 1.6152 6 6 3.6827 -0.8183 1.7951 7 8 4.4218 -0.4197 0.9201 8 7 4.1973 -1.3352 2.9284 9 7 5.5862 -1.4125 3.0955 10 6 6.1008 -1.9289 4.2290 11 8 5.3601 -2.3280 5.1062 12 6 7.5669 -2.0100 4.4056 13 6 8.4202 -1.5513 3.3960 14 6 9.7925 -1.6243 3.5536 15 6 10.3351 -2.1488 4.7061 16 6 9.4926 -2.6142 5.7331 17 6 10.0465 -3.1527 6.9177 18 1 11.0421 -2.8693 7.2258 19 6 9.3047 -4.0530 7.6907 20 7 8.2718 -4.6649 7.1709 21 14 9.7892 -4.3810 9.4648 22 1 9.0022 -3.4992 10.3639 23 1 9.5135 -5.8014 9.7987 24 1 11.2372 -4.1029 9.6419 25 6 8.0983 -2.5430 5.5741 26 1 -0.3634 0.5970 0.8364 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0229 0.0987 29 1 1.7610 -1.7369 1.6664 30 1 1.7610 -0.1171 2.4042 31 1 3.6062 -1.6536 3.6284 32 1 6.1774 -1.0937 2.3956 33 1 8.0050 -1.1379 2.4886 34 1 10.4426 -1.2680 2.7683 35 1 11.4075 -2.2029 4.8216 36 1 7.7578 -5.2892 7.7066 37 1 7.4435 -2.8947 6.3577 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118895044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:58 Heat of formation + Delta-G solvation = -81.233613 kcal Electronic energy + Delta-G solvation = -24319.181094 eV Core-core repulsion = 20383.487488 eV Total energy + Delta-G solvation = -3935.693606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.41524 -39.00290 -37.28755 -37.17782 -36.29220 -35.26857 -33.86085 -32.36070 -30.79094 -29.97229 -29.56786 -28.97075 -25.40043 -23.10622 -21.79157 -21.03056 -20.18234 -19.15087 -18.29988 -17.94674 -17.27616 -16.72744 -16.69621 -16.18858 -15.75224 -15.60312 -15.18964 -14.73683 -14.42839 -14.38212 -14.01650 -13.73989 -13.68462 -13.32536 -13.18069 -12.87856 -12.62348 -12.33559 -12.26955 -11.77878 -11.56357 -11.39094 -11.23274 -11.21955 -11.13846 -10.82022 -10.73899 -10.58270 -10.21160 -9.79697 -9.40549 -9.30625 -8.37495 -7.75176 -7.62706 -6.89312 -4.50252 -0.54536 1.80134 1.87400 2.16621 2.30721 2.72383 3.02678 3.06389 3.08559 3.25557 3.57781 3.64102 3.79974 3.85195 4.18786 4.30612 4.44124 4.52178 4.60093 4.65330 5.14595 5.41059 5.49033 5.98952 6.18839 6.50662 6.61808 6.69459 6.86071 6.89655 7.10640 7.25733 7.50108 7.61289 7.74532 7.77074 7.87537 8.06440 8.39417 8.62164 8.71191 8.73294 10.05410 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.002392 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.405937 B =11702.970612 C =12460.952530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.459 3.541 3 O -0.918 6.918 4 O -0.918 6.918 5 C -0.653 4.653 6 C 0.537 3.463 7 O -0.532 6.532 8 N -0.505 5.505 9 N -0.530 5.530 10 C 0.570 3.430 11 O -0.544 6.544 12 C -0.121 4.121 13 C -0.218 4.218 14 C -0.094 4.094 15 C -0.206 4.206 16 C 0.098 3.902 17 C -0.457 4.457 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.087 4.087 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.433 0.567 32 H 0.434 0.566 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.285 0.715 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 5.460 -7.781 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.634 3.366 3 O -0.915 6.915 4 O -0.915 6.915 5 C -0.781 4.781 6 C 0.320 3.680 7 O -0.408 6.408 8 N -0.250 5.250 9 N -0.282 5.282 10 C 0.362 3.638 11 O -0.421 6.421 12 C -0.126 4.126 13 C -0.238 4.238 14 C -0.112 4.112 15 C -0.226 4.226 16 C 0.095 3.905 17 C -0.485 4.485 18 H 0.101 0.899 19 C -0.147 4.147 20 N -0.407 5.407 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.107 4.107 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.182 0.818 30 H 0.182 0.818 31 H 0.276 0.724 32 H 0.278 0.722 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.902 5.532 -8.314 18.778 hybrid contribution -0.633 -0.639 1.481 1.733 sum -16.535 4.894 -6.833 18.549 Atomic orbital electron populations 1.30390 1.26697 1.11816 1.12207 1.07157 0.77614 0.75829 0.75978 1.93611 1.78774 1.33944 1.85204 1.93614 1.78764 1.67204 1.51921 1.30887 1.01192 1.17101 1.28911 1.19146 0.88094 0.78835 0.81912 1.90900 1.60300 1.48650 1.40971 1.44521 0.97843 1.62718 1.19936 1.45311 0.93657 1.66833 1.22406 1.19189 0.89829 0.75558 0.79227 1.90715 1.61083 1.48690 1.41574 1.19135 0.87725 1.07310 0.98449 1.20394 0.93738 1.11053 0.98648 1.20459 0.94009 0.99632 0.97086 1.21148 0.98229 1.08745 0.94511 1.17590 0.90975 0.89834 0.92084 1.19621 1.02008 1.21831 1.05083 0.89856 1.25988 0.94009 0.94183 1.00498 1.69785 1.14775 1.18894 1.37278 0.86228 0.80217 0.78234 0.81688 1.19182 1.20163 1.18449 1.21614 0.95809 0.97687 0.95617 0.85110 0.84752 0.85102 0.81755 0.81767 0.72437 0.72156 0.88935 0.88490 0.88331 0.90383 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.62 10.62 101.05 1.07 -0.55 16 2 S 2.46 19.35 4.60 -107.50 -0.49 18.86 16 3 O -0.92 -11.31 17.95 -59.52 -1.07 -12.38 16 4 O -0.92 -11.38 17.95 -59.53 -1.07 -12.44 16 5 C -0.65 -3.98 6.29 36.01 0.23 -3.75 16 6 C 0.54 6.85 7.97 -10.99 -0.09 6.76 16 7 O -0.53 -8.92 15.46 2.55 0.04 -8.88 16 8 N -0.51 -6.97 6.26 31.22 0.20 -6.78 16 9 N -0.53 -9.13 6.21 30.54 0.19 -8.94 16 10 C 0.57 11.89 7.89 -12.31 -0.10 11.79 16 11 O -0.54 -12.40 16.17 5.32 0.09 -12.31 16 12 C -0.12 -2.77 5.87 -105.04 -0.62 -3.38 16 13 C -0.22 -4.53 9.55 -38.92 -0.37 -4.91 16 14 C -0.09 -1.96 10.01 -39.73 -0.40 -2.36 16 15 C -0.21 -4.75 9.78 -38.81 -0.38 -5.13 16 16 C 0.10 2.50 5.57 -106.87 -0.60 1.90 16 17 C -0.46 -11.58 9.05 -37.73 -0.34 -11.92 16 18 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 20 N -0.78 -19.95 10.95 55.55 0.61 -19.34 16 21 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 C -0.09 -2.22 8.23 -38.44 -0.32 -2.54 16 26 H 0.13 0.05 8.14 -51.92 -0.42 -0.38 16 27 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.16 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.16 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.43 5.05 8.00 -182.59 -1.46 3.59 16 32 H 0.43 7.23 6.02 -182.59 -1.10 6.14 16 33 H 0.09 1.65 6.38 -52.48 -0.33 1.32 16 34 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.14 3.72 5.74 -52.49 -0.30 3.41 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -37.51 341.59 -9.09 -46.60 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.70 Total: 9.76 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -1.99 Total: -12.41 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.99 Total: -35.07 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -2.01 Total: -46.01 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 19.35 SS G_CDS: -0.49 Total: 18.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.51 -9.09 -46.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118895044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.631 kcal (2) G-P(sol) polarization free energy of solvation -37.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds