Wall clock time and date at job start Tue Mar 31 2020 04:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.41416 * 126.49904 * 283.45445 * 3 2 1 5 5 N 1.30353 * 108.20314 * 180.02562 * 4 3 2 6 6 N 1.39905 * 109.20364 * 359.97438 * 5 4 3 7 7 C 1.46496 * 125.75857 * 179.97438 * 6 5 4 8 8 C 1.53175 * 109.54744 * 59.84753 * 7 6 5 9 9 C 1.53104 * 109.16058 * 183.23795 * 8 7 6 10 10 O 1.42905 * 109.48481 * 57.47661 * 9 8 7 11 11 C 1.42899 * 114.09622 * 298.88791 * 10 9 8 12 12 C 1.53095 * 109.41705 * 61.15924 * 11 10 9 13 13 C 1.34931 * 108.47533 * 359.97438 * 6 5 4 14 14 N 1.38182 * 126.44025 * 179.97438 * 13 6 5 15 15 S 1.65604 * 120.00056 * 180.02562 * 14 13 6 16 16 O 1.42101 * 106.40010 * 178.54526 * 15 14 13 17 17 O 1.42099 * 106.40070 * 311.46624 * 15 14 13 18 18 C 1.76202 * 107.21651 * 65.00554 * 15 14 13 19 19 H 1.08002 * 120.00184 * 359.97438 * 18 15 14 20 20 C 1.37874 * 119.99964 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99971 * 179.97438 * 20 18 15 22 22 Si 1.86799 * 120.00035 * 0.02562 * 20 18 15 23 23 H 1.48501 * 109.47201 * 90.00063 * 22 20 18 24 24 H 1.48504 * 109.47353 * 209.99895 * 22 20 18 25 25 H 1.48497 * 109.47238 * 329.99754 * 22 20 18 26 26 H 1.07999 * 125.90155 * 0.04387 * 4 3 2 27 27 H 1.09003 * 109.54131 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.52231 * 303.06000 * 8 7 6 29 29 H 1.09006 * 109.52318 * 63.24301 * 8 7 6 30 30 H 1.09004 * 109.40578 * 297.49453 * 9 8 7 31 31 H 1.09005 * 109.48314 * 177.50717 * 9 8 7 32 32 H 1.09006 * 109.48196 * 301.17533 * 11 10 9 33 33 H 1.08998 * 109.48462 * 181.14515 * 11 10 9 34 34 H 1.09001 * 109.52316 * 182.48646 * 12 11 10 35 35 H 1.08997 * 109.57075 * 62.32806 * 12 11 10 36 36 H 0.97004 * 120.00349 * 0.02562 * 14 13 6 37 37 H 0.97000 * 120.00393 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4093 -0.2635 1.1056 5 7 4.6469 -0.1672 0.7078 6 7 4.6689 0.1581 -0.6528 7 6 5.8710 0.3544 -1.4667 8 6 6.7077 -0.9287 -1.4629 9 6 7.9998 -0.6884 -2.2483 10 8 8.7119 0.4077 -1.6707 11 6 7.9960 1.6443 -1.6913 12 6 6.7048 1.4985 -0.8817 13 6 3.3960 0.2605 -1.0886 14 7 2.9906 0.5676 -2.3734 15 16 1.3766 0.6521 -2.7344 16 8 1.2906 1.0158 -4.1054 17 8 0.7846 -0.5258 -2.2041 18 6 0.7074 2.0008 -1.8190 19 1 1.3465 2.5857 -1.1740 20 6 -0.6321 2.3094 -1.9259 21 7 -1.1317 3.3157 -1.2423 22 14 -1.7376 1.2974 -3.0408 23 1 -2.3145 0.1660 -2.2711 24 1 -2.8346 2.1534 -3.5596 25 1 -0.9428 0.7681 -4.1780 26 1 3.0829 -0.5038 2.1066 27 1 5.5831 0.5989 -2.4892 28 1 6.9523 -1.2010 -0.4361 29 1 6.1409 -1.7346 -1.9292 30 1 7.7557 -0.4573 -3.2852 31 1 8.6195 -1.5843 -2.2116 32 1 7.7519 1.9059 -2.7209 33 1 8.6130 2.4289 -1.2533 34 1 6.1360 2.4269 -0.9328 35 1 6.9484 1.2773 0.1574 36 1 3.6513 0.7336 -3.0639 37 1 -2.0740 3.5331 -1.3178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192944054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:30 Heat of formation + Delta-G solvation = -23.107360 kcal Electronic energy + Delta-G solvation = -26537.946840 eV Core-core repulsion = 22637.066529 eV Total energy + Delta-G solvation = -3900.880311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.62474 -40.13595 -38.35740 -36.98891 -36.69222 -36.53742 -35.57405 -35.12683 -32.13386 -31.61880 -30.19699 -28.62059 -26.15976 -24.59206 -23.89666 -22.76621 -21.27657 -21.19711 -20.10207 -19.48892 -18.89845 -18.06472 -17.28815 -17.14858 -17.07862 -16.56843 -16.30677 -15.91659 -15.69532 -15.67845 -15.06736 -14.81839 -14.69458 -14.61192 -14.08882 -13.89274 -13.79284 -13.54953 -13.36900 -13.21878 -13.15359 -12.93332 -12.73497 -12.67883 -12.30728 -12.25682 -12.05325 -11.98879 -11.73845 -11.36723 -11.31989 -11.24798 -10.65164 -10.12197 -9.27797 -8.98109 -7.52502 -0.45682 0.50963 0.95934 1.07916 1.13402 1.15151 1.31665 1.84300 2.05028 2.22708 2.45521 2.95947 2.99253 3.08504 3.18950 3.44847 3.58599 3.59808 3.75670 3.83705 3.92955 3.99492 4.28094 4.29554 4.41635 4.55224 4.61114 4.63648 4.73255 4.82674 5.01842 5.08122 5.15243 5.28849 5.34770 5.50212 5.92529 5.97146 6.24462 6.52160 6.52559 7.27887 8.18684 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.004516 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.906344 B = 6198.271497 C = 6629.323608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.279 3.721 3 C -0.239 4.239 4 C 0.133 3.867 5 N -0.285 5.285 6 N -0.360 5.360 7 C 0.145 3.855 8 C -0.159 4.159 9 C 0.064 3.936 10 O -0.396 6.396 11 C 0.065 3.935 12 C -0.160 4.160 13 C 0.396 3.604 14 N -1.012 6.012 15 S 2.678 3.322 16 O -1.004 7.004 17 O -0.992 6.992 18 C -1.015 5.015 19 H 0.112 0.888 20 C 0.140 3.860 21 N -0.838 5.838 22 Si 0.808 3.192 23 H -0.248 1.248 24 H -0.223 1.223 25 H -0.229 1.229 26 H 0.232 0.768 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.437 0.563 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.093 -5.051 -0.733 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.036 4.036 3 C -0.258 4.258 4 C -0.056 4.056 5 N -0.104 5.104 6 N -0.145 5.145 7 C 0.045 3.955 8 C -0.197 4.197 9 C -0.013 4.013 10 O -0.315 6.315 11 C -0.012 4.012 12 C -0.199 4.199 13 C 0.163 3.837 14 N -0.761 5.761 15 S 2.779 3.221 16 O -0.993 6.993 17 O -0.981 6.981 18 C -1.149 5.149 19 H 0.130 0.870 20 C -0.079 4.079 21 N -0.468 5.468 22 Si 0.626 3.374 23 H -0.172 1.172 24 H -0.145 1.145 25 H -0.151 1.151 26 H 0.248 0.752 27 H 0.134 0.866 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.276 0.724 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.197 -5.608 -0.917 20.021 hybrid contribution -1.524 0.620 -0.632 1.762 sum 17.674 -4.989 -1.549 18.430 Atomic orbital electron populations 1.80961 1.13494 1.10530 1.06617 1.24203 0.91616 0.93170 0.94579 1.15791 0.85387 1.29263 0.95397 1.24211 0.87443 0.94702 0.99292 1.77104 1.19963 1.24741 0.88605 1.48696 1.02342 1.55397 1.08111 1.21854 0.81652 0.98401 0.93610 1.22572 0.97250 0.95982 1.03902 1.22726 0.91752 0.90777 0.96012 1.87955 1.43032 1.18302 1.82212 1.22704 0.91636 0.86798 1.00037 1.22569 0.97355 0.97723 1.02216 1.17599 0.87180 0.94506 0.84367 1.52900 1.28606 1.81242 1.13308 1.01516 0.70970 0.76040 0.73590 1.93493 1.84313 1.85624 1.35897 1.93550 1.73493 1.51262 1.79768 1.30298 1.04857 1.35384 1.44399 0.86969 1.24654 0.97346 0.93042 0.92887 1.69952 1.15909 1.25041 1.35890 0.87753 0.85040 0.82553 0.82030 1.17212 1.14506 1.15133 0.75208 0.86634 0.90054 0.89567 0.91008 0.86593 0.90998 0.86749 0.89934 0.90072 0.72400 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -23.16 15.76 19.00 0.30 -22.86 16 2 C 0.28 12.97 10.07 88.33 0.89 13.86 16 3 C -0.24 -8.76 5.86 -21.02 -0.12 -8.88 16 4 C 0.13 3.66 11.99 85.70 1.03 4.68 16 5 N -0.29 -7.48 12.31 -56.24 -0.69 -8.18 16 6 N -0.36 -9.30 3.28 -322.65 -1.06 -10.35 16 7 C 0.15 2.63 3.03 45.11 0.14 2.77 16 8 C -0.16 -2.39 5.68 30.69 0.17 -2.22 16 9 C 0.06 0.74 6.84 72.02 0.49 1.23 16 10 O -0.40 -6.10 10.77 -148.98 -1.60 -7.71 16 11 C 0.07 0.80 6.84 72.01 0.49 1.29 16 12 C -0.16 -2.59 5.68 30.69 0.17 -2.42 16 13 C 0.40 13.06 7.62 132.59 1.01 14.07 16 14 N -1.01 -34.44 5.83 -54.47 -0.32 -34.75 16 15 S 2.68 126.72 3.77 -56.49 -0.21 126.50 16 16 O -1.00 -50.04 16.02 -128.00 -2.05 -52.10 16 17 O -0.99 -51.02 12.23 -128.00 -1.56 -52.59 16 18 C -1.02 -54.99 7.17 67.73 0.49 -54.51 16 19 H 0.11 6.24 8.06 -2.91 -0.02 6.22 16 20 C 0.14 7.97 5.03 84.65 0.43 8.39 16 21 N -0.84 -48.50 13.96 21.45 0.30 -48.20 16 22 Si 0.81 41.89 26.54 68.60 1.82 43.71 16 23 H -0.25 -13.23 7.11 99.48 0.71 -12.53 16 24 H -0.22 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.23 -11.84 5.61 99.48 0.56 -11.29 16 26 H 0.23 4.40 8.06 -2.91 -0.02 4.37 16 27 H 0.12 1.65 6.78 -2.39 -0.02 1.63 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.44 10.89 7.62 -96.74 -0.74 10.15 16 37 H 0.29 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -76.16 320.07 0.35 -75.81 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.25 Total: 12.43 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 5.19 Total: -21.72 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -1.47 Total: -124.34 kcal Atomic # 8 Polarization: -107.17 SS G_CDS: -5.22 Total: -112.39 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.82 Total: 43.71 kcal Atomic # 16 Polarization: 126.72 SS G_CDS: -0.21 Total: 126.50 kcal Total: -76.16 0.35 -75.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192944054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.702 kcal (2) G-P(sol) polarization free energy of solvation -76.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds