Wall clock time and date at job start Tue Mar 31 2020 04:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00349 * 2 1 4 4 H 1.48503 * 109.46991 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47270 * 119.99880 * 3 2 1 6 6 H 1.48494 * 109.47223 * 240.00177 * 3 2 1 7 7 C 1.37881 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00144 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00189 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40199 * 297.53088 * 9 7 2 11 11 O 1.42101 * 106.39984 * 70.44547 * 9 7 2 12 12 N 1.65599 * 107.21812 * 183.98766 * 9 7 2 13 13 C 1.39675 * 120.00036 * 63.52142 * 12 9 7 14 14 C 1.38908 * 120.07660 * 254.94907 * 13 12 9 15 15 C 1.38098 * 119.92524 * 179.76677 * 14 13 12 16 16 C 1.38285 * 120.07581 * 0.51601 * 15 14 13 17 17 C 1.50699 * 119.92681 * 179.72218 * 16 15 14 18 18 C 1.53000 * 109.47002 * 270.01682 * 17 16 15 19 19 H 1.08998 * 110.50474 * 54.29835 * 18 17 16 20 20 C 1.54096 * 110.56475 * 177.03865 * 18 17 16 21 21 O 1.45707 * 104.00291 * 118.57321 * 20 18 17 22 22 C 1.33764 * 109.47955 * 0.02562 * 21 20 18 23 23 O 1.21512 * 123.06908 * 180.02562 * 22 21 20 24 24 N 1.34326 * 113.90506 * 0.08552 * 22 21 20 25 25 C 1.38287 * 120.15117 * 359.73478 * 16 15 14 26 26 C 1.38104 * 120.07064 * 0.02562 * 25 16 15 27 27 H 0.97002 * 119.99727 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00021 * 243.51912 * 12 9 7 29 29 H 1.08001 * 120.03593 * 0.02562 * 14 13 12 30 30 H 1.08004 * 119.96048 * 180.25260 * 15 14 13 31 31 H 1.08998 * 109.47307 * 30.01467 * 17 16 15 32 32 H 1.09002 * 109.47232 * 150.01830 * 17 16 15 33 33 H 1.08999 * 110.51969 * 237.20533 * 20 18 17 34 34 H 1.09003 * 110.51908 * 359.94646 * 20 18 17 35 35 H 0.97000 * 125.73675 * 179.97438 * 24 22 21 36 36 H 1.07991 * 119.96723 * 180.02562 * 25 16 15 37 37 H 1.08001 * 120.03786 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 16 1.1235 -2.7201 -0.0005 10 8 0.3776 -2.7528 1.2085 11 8 0.5272 -2.8391 -1.2849 12 7 2.2449 -3.9336 0.1088 13 6 3.0486 -4.0415 1.2460 14 6 4.3825 -3.6573 1.1948 15 6 5.1730 -3.7607 2.3224 16 6 4.6409 -4.2562 3.4987 17 6 5.5083 -4.3735 4.7255 18 6 6.1773 -5.7493 4.7473 19 1 6.7154 -5.9270 3.8162 20 6 7.1286 -5.8695 5.9536 21 8 6.5735 -6.9689 6.7323 22 6 5.4817 -7.4417 6.1210 23 8 4.8228 -8.3634 6.5600 24 7 5.1802 -6.8060 4.9767 25 6 3.3147 -4.6445 3.5518 26 6 2.5173 -4.5390 2.4292 27 1 -0.4850 0.8401 0.0004 28 1 2.3437 -4.5696 -0.6170 29 1 4.7998 -3.2741 0.2753 30 1 6.2092 -3.4583 2.2843 31 1 6.2736 -3.5977 4.7050 32 1 4.8937 -4.2542 5.6178 33 1 8.1388 -6.1085 5.6212 34 1 7.1249 -4.9484 6.5364 35 1 4.4286 -7.0078 4.3976 36 1 2.9022 -5.0306 4.4721 37 1 1.4818 -4.8428 2.4712 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978913.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:30 Heat of formation + Delta-G solvation = -173.689903 kcal Electronic energy + Delta-G solvation = -25066.972080 eV Core-core repulsion = 21127.269268 eV Total energy + Delta-G solvation = -3939.702812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.55339 -40.42878 -38.38047 -37.47485 -36.88075 -36.20563 -35.43977 -35.12428 -32.51927 -31.81841 -29.92072 -28.27798 -26.66730 -23.75412 -23.45780 -23.16059 -21.99598 -21.10583 -19.49959 -19.07615 -18.63296 -18.23765 -18.11109 -17.47041 -17.00627 -16.51172 -16.44432 -15.92893 -15.69760 -15.59020 -15.13453 -14.94100 -14.60298 -14.34883 -14.22678 -14.00279 -13.72874 -13.42062 -13.28518 -12.99618 -12.87240 -12.59478 -12.54301 -12.49145 -12.32781 -12.15222 -11.96794 -11.81293 -11.59454 -11.23613 -11.09635 -10.66613 -10.38231 -9.81020 -9.36058 -8.76512 -7.50234 0.02713 0.52021 0.55260 1.34520 1.37023 1.49984 1.65695 1.78143 2.20233 2.57563 2.72646 2.77718 2.90398 3.26413 3.64662 3.87395 3.91341 4.05862 4.08454 4.16710 4.34701 4.42858 4.51145 4.56288 4.62831 4.71812 4.73946 4.94519 5.05865 5.18875 5.21559 5.31209 5.47929 5.66456 5.69776 5.81176 5.88041 6.05192 6.30637 6.40757 6.76351 7.04885 8.19849 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.003096 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.290338 B = 9040.373660 C = 9744.373857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.267 1.267 5 H -0.246 1.246 6 H -0.248 1.248 7 C -1.032 5.032 8 H 0.124 0.876 9 S 2.711 3.289 10 O -1.032 7.032 11 O -1.044 7.044 12 N -1.073 6.073 13 C 0.122 3.878 14 C -0.123 4.123 15 C -0.096 4.096 16 C -0.085 4.085 17 C -0.083 4.083 18 C 0.100 3.900 19 H 0.132 0.868 20 C 0.041 3.959 21 O -0.347 6.347 22 C 0.643 3.357 23 O -0.586 6.586 24 N -0.721 5.721 25 C -0.114 4.114 26 C -0.133 4.133 27 H 0.299 0.701 28 H 0.421 0.579 29 H 0.138 0.862 30 H 0.171 0.829 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.437 0.563 36 H 0.133 0.867 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.974 -5.281 8.317 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.169 1.169 6 H -0.172 1.172 7 C -1.166 5.166 8 H 0.142 0.858 9 S 2.814 3.186 10 O -1.022 7.022 11 O -1.035 7.035 12 N -0.827 5.827 13 C 0.028 3.972 14 C -0.144 4.144 15 C -0.115 4.115 16 C -0.085 4.085 17 C -0.121 4.121 18 C -0.004 4.004 19 H 0.150 0.850 20 C -0.033 4.033 21 O -0.257 6.257 22 C 0.396 3.604 23 O -0.475 6.475 24 N -0.393 5.393 25 C -0.133 4.133 26 C -0.154 4.154 27 H 0.109 0.891 28 H 0.259 0.741 29 H 0.155 0.845 30 H 0.188 0.812 31 H 0.150 0.850 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.280 0.720 36 H 0.151 0.849 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.709 -5.750 8.905 22.379 hybrid contribution -0.709 0.566 -1.070 1.403 sum 19.000 -5.184 7.835 21.196 Atomic orbital electron populations 1.69999 1.08904 1.32435 1.41357 1.26056 0.95359 1.05464 0.87462 0.85143 0.78791 0.74200 0.80969 1.19109 1.16941 1.17170 1.30746 1.07211 1.11856 1.66785 0.85809 1.00311 0.72670 0.74095 0.71564 1.93313 1.71353 1.88026 1.49464 1.93322 1.77318 1.88245 1.44591 1.53095 1.56253 1.47202 1.26190 1.17643 0.91569 1.01323 0.86673 1.21705 0.92555 0.99105 1.01009 1.21319 1.01243 0.98280 0.90621 1.20024 0.93618 0.98682 0.96194 1.21109 0.99547 0.96659 0.94754 1.22702 0.88882 0.87394 1.01428 0.85043 1.24935 0.98788 0.89373 0.90176 1.87239 1.39604 1.50136 1.48677 1.18755 0.79979 0.81384 0.80292 1.91031 1.53897 1.31982 1.70575 1.46270 1.32617 1.36141 1.24241 1.21092 0.94222 1.00736 0.97215 1.21599 1.00219 0.99577 0.94038 0.89118 0.74119 0.84454 0.81182 0.84951 0.90123 0.84181 0.84789 0.71966 0.84894 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.98 13.14 21.45 0.28 -52.70 16 2 C 0.07 3.78 5.46 84.66 0.46 4.24 16 3 Si 0.99 39.75 29.54 68.60 2.03 41.77 16 4 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 6 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 7 C -1.03 -55.31 9.65 67.74 0.65 -54.66 16 8 H 0.12 5.85 7.81 -2.91 -0.02 5.82 16 9 S 2.71 144.76 5.00 -56.49 -0.28 144.48 16 10 O -1.03 -61.36 17.02 -128.00 -2.18 -63.54 16 11 O -1.04 -62.23 18.02 -128.00 -2.31 -64.53 16 12 N -1.07 -42.12 5.70 -51.37 -0.29 -42.41 16 13 C 0.12 4.17 5.79 38.21 0.22 4.39 16 14 C -0.12 -3.19 9.97 22.40 0.22 -2.97 16 15 C -0.10 -1.66 9.69 22.25 0.22 -1.44 16 16 C -0.08 -1.41 5.01 -19.84 -0.10 -1.51 16 17 C -0.08 -0.63 4.87 29.85 0.15 -0.48 16 18 C 0.10 0.64 3.71 45.25 0.17 0.81 16 19 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 20 C 0.04 0.18 7.88 72.35 0.57 0.75 16 21 O -0.35 -6.03 11.09 -47.25 -0.52 -6.55 16 22 C 0.64 14.44 9.16 129.86 1.19 15.62 16 23 O -0.59 -19.40 18.04 19.65 0.35 -19.05 16 24 N -0.72 -10.68 5.81 -569.23 -3.31 -13.98 16 25 C -0.11 -2.73 8.92 22.25 0.20 -2.53 16 26 C -0.13 -4.41 9.30 22.40 0.21 -4.20 16 27 H 0.30 15.91 8.31 -92.71 -0.77 15.14 16 28 H 0.42 13.95 8.95 -96.74 -0.87 13.09 16 29 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.13 0.14 8.08 -2.39 -0.02 0.12 16 32 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.14 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.13 -0.04 7.73 -2.39 -0.02 -0.06 16 35 H 0.44 6.75 8.31 -92.71 -0.77 5.98 16 36 H 0.13 2.79 8.06 -2.92 -0.02 2.76 16 37 H 0.11 3.94 7.95 -2.91 -0.02 3.91 16 Total: -1.00 -90.18 339.78 -2.57 -92.75 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.50 Total: 25.74 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.16 Total: -41.98 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -3.32 Total: -109.09 kcal Atomic # 8 Polarization: -149.01 SS G_CDS: -4.65 Total: -153.67 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: 144.76 SS G_CDS: -0.28 Total: 144.48 kcal Total: -90.18 -2.57 -92.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978913.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.943 kcal (2) G-P(sol) polarization free energy of solvation -90.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds