Wall clock time and date at job start Tue Mar 31 2020 04:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00403 * 2 1 4 4 H 1.48491 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47060 * 300.00050 * 3 2 1 6 6 H 1.48501 * 109.46859 * 59.99693 * 3 2 1 7 7 C 1.37875 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00354 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99957 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40054 * 66.46027 * 9 7 2 11 11 O 1.42095 * 106.40011 * 293.53609 * 9 7 2 12 12 N 1.65602 * 107.21565 * 179.97438 * 9 7 2 13 13 C 1.46503 * 120.00129 * 64.99763 * 12 9 7 14 14 C 1.53002 * 109.46788 * 164.99758 * 13 12 9 15 15 S 1.81408 * 109.46659 * 180.02562 * 14 13 12 16 16 O 1.42096 * 110.53941 * 68.37861 * 15 14 13 17 17 O 1.42100 * 110.54199 * 291.62685 * 15 14 13 18 18 N 1.65599 * 104.44786 * 179.97438 * 15 14 13 19 19 C 1.46923 * 120.63397 * 270.00570 * 18 15 14 20 20 C 1.53195 * 108.77575 * 233.60996 * 19 18 15 21 21 C 1.53046 * 109.30793 * 305.36150 * 20 19 18 22 22 C 1.53043 * 109.53700 * 61.36640 * 21 20 19 23 23 C 1.46931 * 120.62873 * 90.00013 * 18 15 14 24 24 H 0.97002 * 119.99582 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99863 * 245.00000 * 12 9 7 26 26 H 1.08997 * 109.46780 * 44.99992 * 13 12 9 27 27 H 1.08997 * 109.47188 * 284.99927 * 13 12 9 28 28 H 1.08997 * 109.47269 * 60.00533 * 14 13 12 29 29 H 1.08997 * 109.47394 * 300.00043 * 14 13 12 30 30 H 1.08996 * 109.59375 * 113.82058 * 19 18 15 31 31 H 1.09006 * 109.58686 * 353.39058 * 19 18 15 32 32 H 1.08990 * 109.49959 * 185.41234 * 20 19 18 33 33 H 1.08999 * 109.49609 * 65.30943 * 20 19 18 34 34 H 1.08998 * 109.45610 * 181.38442 * 21 20 19 35 35 H 1.08997 * 109.46079 * 301.34562 * 21 20 19 36 36 H 1.09000 * 109.49738 * 58.58741 * 22 21 20 37 37 H 1.09003 * 109.49316 * 178.68106 * 22 21 20 38 38 H 1.09001 * 109.58511 * 6.60291 * 23 18 15 39 39 H 1.09004 * 109.58611 * 246.18090 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 16 1.1233 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0005 13 6 3.1392 -4.1089 1.1504 14 6 3.8044 -5.4848 1.0770 15 16 4.9072 -5.6999 2.5012 16 8 4.1559 -5.7979 3.7033 17 8 6.0233 -4.8257 2.4041 18 7 5.5528 -7.2114 2.2994 19 6 4.8902 -8.3911 2.8721 20 6 5.9031 -9.1590 3.7271 21 6 7.1381 -9.4802 2.8822 22 6 7.7906 -8.1774 2.4138 23 6 6.7991 -7.3984 1.5440 24 1 -0.4849 0.8401 -0.0004 25 1 2.3169 -4.5326 -0.7608 26 1 2.5621 -4.0330 2.0719 27 1 3.9053 -3.3337 1.1365 28 1 4.3815 -5.5607 0.1555 29 1 3.0383 -6.2600 1.0908 30 1 4.5287 -9.0332 2.0690 31 1 4.0530 -8.0740 3.4942 32 1 5.4524 -10.0866 4.0798 33 1 6.1954 -8.5482 4.5813 34 1 7.8501 -10.0480 3.4811 35 1 6.8415 -10.0700 2.0150 36 1 8.0652 -7.5760 3.2804 37 1 8.6833 -8.4065 1.8317 38 1 7.2215 -6.4263 1.2895 39 1 6.5932 -7.9596 0.6324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:24 Heat of formation + Delta-G solvation = -204.969120 kcal Electronic energy + Delta-G solvation = -24248.085735 eV Core-core repulsion = 20442.470506 eV Total energy + Delta-G solvation = -3805.615229 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.085 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.29197 -38.32900 -37.53133 -37.10995 -36.85867 -36.19043 -35.19357 -33.38658 -31.93253 -31.12424 -28.28489 -25.53055 -24.31541 -24.18892 -21.38775 -21.15301 -19.86295 -19.43061 -18.82532 -18.35146 -17.38552 -17.29487 -17.18137 -16.60423 -16.22089 -15.80952 -15.46944 -15.38794 -15.36295 -15.23039 -14.53937 -14.45708 -14.02335 -13.67291 -13.52072 -13.43460 -13.26758 -13.04893 -13.01315 -12.98001 -12.90531 -12.73209 -12.55238 -12.46516 -12.28870 -12.08010 -11.86898 -11.77214 -11.42175 -11.28747 -11.27652 -11.06205 -10.35623 -9.92482 -8.77940 -7.51257 -0.90695 0.30039 1.32897 1.34667 1.52157 1.60899 2.19847 2.56015 2.72304 2.94390 3.08518 3.33055 3.62559 3.71657 3.79580 4.05428 4.05838 4.22942 4.26564 4.33678 4.38825 4.51234 4.54460 4.60305 4.68241 4.87460 4.88895 4.97758 4.99719 5.05977 5.23641 5.27156 5.27783 5.36789 5.52892 5.69134 5.87234 6.31724 6.76707 8.19037 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.003118 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.193264 B = 8977.045197 C = 9440.462723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.070 3.930 3 Si 0.989 3.011 4 H -0.247 1.247 5 H -0.258 1.258 6 H -0.260 1.260 7 C -1.044 5.044 8 H 0.123 0.877 9 S 2.717 3.283 10 O -1.037 7.037 11 O -1.041 7.041 12 N -1.111 6.111 13 C 0.117 3.883 14 C -0.626 4.626 15 S 2.620 3.380 16 O -0.985 6.985 17 O -0.980 6.980 18 N -0.994 5.994 19 C 0.106 3.894 20 C -0.135 4.135 21 C -0.115 4.115 22 C -0.135 4.135 23 C 0.106 3.894 24 H 0.300 0.700 25 H 0.422 0.578 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.173 0.827 29 H 0.164 0.836 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.763 -19.473 2.226 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.143 4.143 3 Si 0.807 3.193 4 H -0.170 1.170 5 H -0.182 1.182 6 H -0.184 1.184 7 C -1.178 5.178 8 H 0.141 0.859 9 S 2.817 3.183 10 O -1.027 7.027 11 O -1.031 7.031 12 N -0.872 5.872 13 C -0.012 4.012 14 C -0.757 4.757 15 S 2.714 3.286 16 O -0.975 6.975 17 O -0.970 6.970 18 N -0.834 5.834 19 C -0.019 4.019 20 C -0.174 4.174 21 C -0.153 4.153 22 C -0.174 4.174 23 C -0.018 4.018 24 H 0.110 0.890 25 H 0.258 0.742 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.191 0.809 29 H 0.182 0.818 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.802 -18.849 3.105 24.791 hybrid contribution 0.158 0.824 -0.719 1.105 sum 15.960 -18.024 2.386 24.193 Atomic orbital electron populations 1.69987 1.08723 1.32356 1.41268 1.26013 0.95405 1.05406 0.87507 0.85110 0.79574 0.75141 0.79429 1.16988 1.18182 1.18416 1.30957 1.07393 1.12580 1.66853 0.85918 1.00004 0.72614 0.74010 0.71646 1.93324 1.74584 1.88300 1.46523 1.93319 1.74403 1.88161 1.47194 1.55269 1.54564 1.50142 1.27267 1.20963 0.94209 0.95931 0.90054 1.30884 1.17021 1.04452 1.23347 1.04494 0.74616 0.73419 0.76040 1.93555 1.74559 1.85830 1.43588 1.93551 1.50309 1.65454 1.87665 1.57557 1.34674 1.22834 1.68329 1.21746 0.95488 0.86429 0.98194 1.21902 0.96764 1.00629 0.98117 1.21492 0.96686 0.96795 1.00308 1.21904 0.98609 0.96934 0.99977 1.21764 0.82737 1.02341 0.94953 0.89028 0.74240 0.90782 0.89921 0.80875 0.81832 0.88361 0.89761 0.89019 0.93290 0.91175 0.90167 0.93281 0.88895 0.89416 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.24 13.19 21.45 0.28 -52.95 16 2 C 0.07 3.89 5.46 84.65 0.46 4.35 16 3 Si 0.99 41.47 29.54 68.60 2.03 43.50 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -1.04 -57.25 9.72 67.73 0.66 -56.59 16 8 H 0.12 6.02 7.81 -2.91 -0.02 6.00 16 9 S 2.72 144.29 5.02 -56.49 -0.28 144.00 16 10 O -1.04 -60.77 18.02 -128.00 -2.31 -63.08 16 11 O -1.04 -62.08 17.49 -128.00 -2.24 -64.32 16 12 N -1.11 -41.52 6.00 -187.49 -1.12 -42.64 16 13 C 0.12 3.80 6.23 86.38 0.54 4.34 16 14 C -0.63 -12.78 6.32 71.98 0.45 -12.33 16 15 S 2.62 62.18 5.45 -56.49 -0.31 61.88 16 16 O -0.99 -30.60 16.59 -127.65 -2.12 -32.72 16 17 O -0.98 -28.81 16.59 -127.65 -2.12 -30.93 16 18 N -0.99 -16.09 3.22 -513.06 -1.65 -17.75 16 19 C 0.11 1.40 6.43 86.36 0.56 1.96 16 20 C -0.13 -1.61 6.08 30.67 0.19 -1.42 16 21 C -0.12 -1.06 5.88 30.62 0.18 -0.88 16 22 C -0.14 -1.54 6.08 30.67 0.19 -1.35 16 23 C 0.11 1.31 6.43 86.36 0.56 1.87 16 24 H 0.30 15.99 8.31 -92.71 -0.77 15.22 16 25 H 0.42 12.55 8.65 -96.74 -0.84 11.71 16 26 H 0.07 2.63 7.75 -2.39 -0.02 2.61 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.17 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.33 6.86 -2.38 -0.02 1.31 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 1.24 6.86 -2.39 -0.02 1.22 16 39 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -86.58 346.87 -5.84 -92.42 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.23 Total: 22.64 kcal Atomic # 6 Polarization: -63.84 SS G_CDS: 3.78 Total: -60.06 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -2.49 Total: -113.34 kcal Atomic # 8 Polarization: -182.26 SS G_CDS: -8.78 Total: -191.04 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 206.47 SS G_CDS: -0.59 Total: 205.88 kcal Total: -86.58 -5.84 -92.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.549 kcal (2) G-P(sol) polarization free energy of solvation -86.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds