Wall clock time and date at job start Tue Mar 31 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46736 * 2 1 4 4 N 1.31789 * 122.85595 * 269.97604 * 3 2 1 5 5 C 1.28970 * 117.20767 * 180.02562 * 4 3 2 6 6 S 1.70959 * 110.32853 * 359.76153 * 5 4 3 7 7 C 1.34509 * 122.85796 * 90.00369 * 3 2 1 8 8 N 1.39424 * 126.07867 * 359.93302 * 7 3 2 9 9 C 1.34773 * 120.00405 * 180.02562 * 8 7 3 10 10 O 1.21423 * 120.00002 * 0.02562 * 9 8 7 11 11 C 1.49265 * 120.00288 * 179.73111 * 9 8 7 12 12 O 1.21373 * 119.99624 * 0.27204 * 11 9 8 13 13 N 1.34769 * 120.00108 * 180.27985 * 11 9 8 14 14 C 1.46507 * 120.00057 * 179.97438 * 13 11 9 15 15 C 1.50695 * 109.47095 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00334 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99829 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00088 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00022 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00327 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99897 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00300 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47443 * 89.99557 * 22 20 18 24 24 H 1.48496 * 109.47119 * 209.99913 * 22 20 18 25 25 H 1.48503 * 109.46856 * 329.99398 * 22 20 18 26 26 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47262 * 299.99980 * 1 2 3 28 28 H 1.09003 * 109.47207 * 60.00114 * 1 2 3 29 29 H 1.09001 * 109.47068 * 240.00219 * 2 1 3 30 30 H 1.08990 * 109.47585 * 119.99836 * 2 1 3 31 31 H 1.08002 * 124.83539 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99481 * 0.02562 * 8 7 3 33 33 H 0.97000 * 120.00347 * 359.97438 * 13 11 9 34 34 H 1.08994 * 109.46849 * 299.99825 * 14 13 11 35 35 H 1.08998 * 109.46926 * 59.99633 * 14 13 11 36 36 H 0.97002 * 120.00040 * 0.02562 * 17 15 14 37 37 H 0.97001 * 120.00446 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2710 2.0948 -1.1071 5 6 2.6991 3.3047 -0.9801 6 16 2.8371 3.7155 0.6736 7 6 2.2755 2.1089 1.1299 8 7 2.1074 1.6369 2.4310 9 6 2.3894 2.4355 3.4794 10 8 2.7894 3.5663 3.2908 11 6 2.2036 1.9321 4.8723 12 8 1.8033 0.8019 5.0607 13 7 2.4802 2.7327 5.9205 14 6 2.2973 2.2388 7.2877 15 6 2.6744 3.3203 8.2671 16 8 3.0576 4.3978 7.8630 17 7 2.5847 3.0906 9.5921 18 6 2.9272 4.0746 10.4831 19 1 3.2692 5.0337 10.1233 20 6 2.8353 3.8376 11.8492 21 7 2.4195 2.6704 12.2871 22 14 3.3012 5.1786 13.0633 23 1 2.1046 6.0001 13.3769 24 1 3.8175 4.5596 14.3104 25 1 4.3522 6.0422 12.4675 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 2.9328 3.9658 -1.8016 32 1 1.7874 0.7336 2.5816 33 1 2.8004 3.6358 5.7700 34 1 1.2541 1.9605 7.4369 35 1 2.9322 1.3673 7.4471 36 1 2.2778 2.2290 9.9153 37 1 2.3550 2.5051 13.2407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261093367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:04 Heat of formation + Delta-G solvation = -61.357644 kcal Electronic energy + Delta-G solvation = -24015.186719 eV Core-core repulsion = 20112.647750 eV Total energy + Delta-G solvation = -3902.538968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23243 -40.11536 -39.01457 -38.15805 -35.85174 -34.62660 -33.88506 -33.49238 -31.48351 -29.35190 -28.29968 -26.08722 -24.95253 -23.70365 -23.57996 -21.04061 -20.25333 -19.82083 -18.84878 -18.15688 -17.99945 -16.98445 -16.81537 -16.44365 -15.70567 -15.44651 -15.34429 -14.78547 -14.72777 -14.37940 -14.34141 -14.13090 -14.05943 -13.70899 -13.61247 -12.70583 -12.37343 -12.28207 -12.16284 -12.01241 -11.72896 -11.69609 -11.50381 -11.20309 -11.18129 -10.50910 -10.38634 -10.09787 -9.71633 -9.70654 -9.28992 -9.23173 -8.76118 -8.46400 -8.18932 -6.59193 -4.01426 0.29161 0.83545 1.22516 1.49588 2.02194 2.49369 2.97035 3.06850 3.18430 3.23163 3.35907 3.62439 3.98258 4.03177 4.26428 4.57932 4.69320 4.74060 4.95600 5.01540 5.08461 5.22581 5.43688 5.56877 5.62368 5.71897 5.72100 5.84204 5.87397 5.97168 6.19954 6.41263 7.06235 7.38716 7.39573 7.48948 7.77193 7.88117 8.35252 8.96572 9.28878 9.76279 10.57405 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.002177 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.861820 B =12861.173347 C =13682.588710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.021 3.979 4 N -0.447 5.447 5 C -0.041 4.041 6 S 0.241 5.759 7 C -0.007 4.007 8 N -0.600 5.600 9 C 0.501 3.499 10 O -0.481 6.481 11 C 0.513 3.487 12 O -0.523 6.523 13 N -0.666 5.666 14 C 0.105 3.895 15 C 0.424 3.576 16 O -0.593 6.593 17 N -0.545 5.545 18 C -0.306 4.306 19 H 0.107 0.893 20 C 0.027 3.973 21 N -0.893 5.893 22 Si 0.934 3.066 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.268 1.268 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.199 0.801 32 H 0.431 0.569 33 H 0.425 0.575 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.396 0.604 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 -4.875 -21.973 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.116 4.116 4 N -0.160 5.160 5 C -0.338 4.338 6 S 0.492 5.508 7 C -0.225 4.225 8 N -0.248 5.248 9 C 0.282 3.718 10 O -0.353 6.353 11 C 0.292 3.708 12 O -0.401 6.401 13 N -0.320 5.320 14 C -0.021 4.021 15 C 0.209 3.791 16 O -0.479 6.479 17 N -0.180 5.180 18 C -0.435 4.435 19 H 0.125 0.875 20 C -0.176 4.176 21 N -0.533 5.533 22 Si 0.761 3.239 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.192 1.192 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.215 0.785 32 H 0.271 0.729 33 H 0.266 0.734 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.230 0.770 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.566 -3.485 -21.926 22.257 hybrid contribution -0.278 -0.801 0.829 1.186 sum -1.844 -4.285 -21.097 21.607 Atomic orbital electron populations 1.21755 0.94198 1.02172 1.02408 1.20053 0.96283 0.88967 1.03390 1.20136 1.07054 0.99277 0.85136 1.66170 1.13236 1.06370 1.30225 1.28517 1.05832 0.96806 1.02658 1.85020 1.59565 1.07248 0.98935 1.23511 1.10643 1.00043 0.88324 1.42418 1.62969 1.18232 1.01170 1.20638 0.78691 0.85602 0.86843 1.90773 1.42022 1.17906 1.84648 1.19285 0.80550 0.85964 0.85001 1.90794 1.45449 1.18241 1.85580 1.45490 1.63284 1.18542 1.04726 1.21178 1.03239 0.97536 0.80192 1.19589 0.86708 0.89073 0.83728 1.90542 1.53285 1.26099 1.77975 1.41771 1.56501 1.16005 1.03689 1.19748 1.41843 0.95830 0.86110 0.87545 1.25343 0.96716 0.97635 0.97940 1.69606 1.45555 1.22097 1.16049 0.85793 0.79029 0.80019 0.79107 1.20189 1.20749 1.19239 0.91741 0.92721 0.92140 0.89617 0.90795 0.78468 0.72860 0.73435 0.88874 0.88878 0.76984 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.05 -0.37 6.12 -27.88 -0.17 -0.54 16 3 C 0.02 0.22 6.03 -83.93 -0.51 -0.29 16 4 N -0.45 -4.88 10.52 -11.72 -0.12 -5.00 16 5 C -0.04 -0.37 12.21 51.56 0.63 0.26 16 6 S 0.24 2.49 20.45 -107.50 -2.20 0.29 16 7 C -0.01 -0.08 7.17 -15.41 -0.11 -0.19 16 8 N -0.60 -6.48 5.38 -11.10 -0.06 -6.54 16 9 C 0.50 6.52 7.85 -11.67 -0.09 6.43 16 10 O -0.48 -7.01 14.10 5.43 0.08 -6.94 16 11 C 0.51 7.34 7.88 -11.68 -0.09 7.25 16 12 O -0.52 -7.95 16.47 5.48 0.09 -7.86 16 13 N -0.67 -10.52 5.52 -61.97 -0.34 -10.86 16 14 C 0.11 1.76 6.15 -5.19 -0.03 1.73 16 15 C 0.42 9.25 7.85 -10.99 -0.09 9.16 16 16 O -0.59 -14.81 15.24 5.55 0.08 -14.73 16 17 N -0.55 -12.92 5.29 -10.97 -0.06 -12.98 16 18 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 16 19 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.12 13.05 55.50 0.72 -22.40 16 22 Si 0.93 20.07 29.55 -169.99 -5.02 15.05 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.49 7.22 -51.93 -0.37 0.12 16 31 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.43 3.89 7.09 -40.82 -0.29 3.60 16 33 H 0.43 7.15 6.90 -40.82 -0.28 6.86 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.40 8.92 7.90 -40.82 -0.32 8.60 16 37 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -30.89 344.72 -5.70 -36.59 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -3.74 Total: 14.69 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -0.33 Total: 15.47 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.14 Total: -57.78 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: 0.25 Total: -29.52 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.20 Total: 0.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.89 -5.70 -36.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261093367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.763 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds