Wall clock time and date at job start Tue Mar 31 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46736 * 2 1 4 4 N 1.31789 * 122.85595 * 269.97604 * 3 2 1 5 5 C 1.28970 * 117.20767 * 180.02562 * 4 3 2 6 6 S 1.70959 * 110.32853 * 359.76153 * 5 4 3 7 7 C 1.34509 * 122.85796 * 90.00369 * 3 2 1 8 8 N 1.39424 * 126.07867 * 359.93302 * 7 3 2 9 9 C 1.34773 * 120.00405 * 180.02562 * 8 7 3 10 10 O 1.21423 * 120.00002 * 0.02562 * 9 8 7 11 11 C 1.49265 * 120.00288 * 179.73111 * 9 8 7 12 12 O 1.21373 * 119.99624 * 0.27204 * 11 9 8 13 13 N 1.34769 * 120.00108 * 180.27985 * 11 9 8 14 14 C 1.46507 * 120.00057 * 179.97438 * 13 11 9 15 15 C 1.50695 * 109.47095 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00334 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99829 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00088 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00022 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00327 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99897 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00300 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47443 * 89.99557 * 22 20 18 24 24 H 1.48496 * 109.47119 * 209.99913 * 22 20 18 25 25 H 1.48503 * 109.46856 * 329.99398 * 22 20 18 26 26 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47262 * 299.99980 * 1 2 3 28 28 H 1.09003 * 109.47207 * 60.00114 * 1 2 3 29 29 H 1.09001 * 109.47068 * 240.00219 * 2 1 3 30 30 H 1.08990 * 109.47585 * 119.99836 * 2 1 3 31 31 H 1.08002 * 124.83539 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99481 * 0.02562 * 8 7 3 33 33 H 0.97000 * 120.00347 * 359.97438 * 13 11 9 34 34 H 1.08994 * 109.46849 * 299.99825 * 14 13 11 35 35 H 1.08998 * 109.46926 * 59.99633 * 14 13 11 36 36 H 0.97002 * 120.00040 * 0.02562 * 17 15 14 37 37 H 0.97001 * 120.00446 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2710 2.0948 -1.1071 5 6 2.6991 3.3047 -0.9801 6 16 2.8371 3.7155 0.6736 7 6 2.2755 2.1089 1.1299 8 7 2.1074 1.6369 2.4310 9 6 2.3894 2.4355 3.4794 10 8 2.7894 3.5663 3.2908 11 6 2.2036 1.9321 4.8723 12 8 1.8033 0.8019 5.0607 13 7 2.4802 2.7327 5.9205 14 6 2.2973 2.2388 7.2877 15 6 2.6744 3.3203 8.2671 16 8 3.0576 4.3978 7.8630 17 7 2.5847 3.0906 9.5921 18 6 2.9272 4.0746 10.4831 19 1 3.2692 5.0337 10.1233 20 6 2.8353 3.8376 11.8492 21 7 2.4195 2.6704 12.2871 22 14 3.3012 5.1786 13.0633 23 1 2.1046 6.0001 13.3769 24 1 3.8175 4.5596 14.3104 25 1 4.3522 6.0422 12.4675 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 2.9328 3.9658 -1.8016 32 1 1.7874 0.7336 2.5816 33 1 2.8004 3.6358 5.7700 34 1 1.2541 1.9605 7.4369 35 1 2.9322 1.3673 7.4471 36 1 2.2778 2.2290 9.9153 37 1 2.3550 2.5051 13.2407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261093367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:04 Heat of formation + Delta-G solvation = -85.969035 kcal Electronic energy + Delta-G solvation = -24016.253949 eV Core-core repulsion = 20112.647750 eV Total energy + Delta-G solvation = -3903.606198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26296 -41.03123 -40.38542 -39.61626 -36.86634 -36.20969 -35.39066 -34.19644 -33.39699 -30.33038 -29.56257 -27.17878 -26.41384 -24.89041 -24.23795 -22.06922 -21.50848 -21.12670 -20.22473 -19.74053 -18.94412 -17.99757 -17.86861 -17.52886 -17.21017 -16.83279 -16.50114 -16.41071 -15.83063 -15.77502 -15.25195 -15.16106 -14.97891 -14.94448 -14.67784 -14.04869 -13.65906 -13.55776 -13.38106 -13.13224 -12.92204 -12.87087 -12.62240 -12.46359 -12.15555 -12.13059 -11.86947 -11.58448 -11.17663 -10.60691 -10.53833 -10.50257 -10.10679 -10.09017 -9.27871 -8.52255 -6.02040 -0.57434 0.05900 0.23045 0.63739 1.05332 1.35791 1.43655 1.55548 1.64585 1.87996 1.95671 2.20883 2.35279 3.01426 3.14695 3.15134 3.30698 3.85700 4.08944 4.14749 4.32370 4.35611 4.36239 4.41093 4.56921 4.66626 4.87797 5.01746 5.10967 5.15178 5.35495 5.38057 5.47333 5.89641 6.01220 6.30761 6.46643 6.61004 6.71003 7.03051 7.41948 7.93251 8.64289 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.002177 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.861820 B =12861.173347 C =13682.588710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.027 3.973 4 N -0.472 5.472 5 C -0.019 4.019 6 S 0.221 5.779 7 C -0.033 4.033 8 N -0.585 5.585 9 C 0.505 3.495 10 O -0.501 6.501 11 C 0.522 3.478 12 O -0.529 6.529 13 N -0.674 5.674 14 C 0.119 3.881 15 C 0.428 3.572 16 O -0.626 6.626 17 N -0.556 5.556 18 C -0.337 4.337 19 H 0.085 0.915 20 C -0.008 4.008 21 N -0.913 5.913 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.272 1.272 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.232 0.768 32 H 0.438 0.562 33 H 0.421 0.579 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.401 0.599 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -5.634 -22.895 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C -0.109 4.109 4 N -0.185 5.185 5 C -0.316 4.316 6 S 0.473 5.527 7 C -0.250 4.250 8 N -0.233 5.233 9 C 0.286 3.714 10 O -0.376 6.376 11 C 0.302 3.698 12 O -0.406 6.406 13 N -0.328 5.328 14 C -0.008 4.008 15 C 0.215 3.785 16 O -0.514 6.514 17 N -0.191 5.191 18 C -0.466 4.466 19 H 0.103 0.897 20 C -0.209 4.209 21 N -0.553 5.553 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.248 0.752 32 H 0.281 0.719 33 H 0.260 0.740 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.236 0.764 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.836 -4.295 -22.872 23.344 hybrid contribution -0.209 -0.587 0.926 1.116 sum -2.044 -4.882 -21.947 22.576 Atomic orbital electron populations 1.21722 0.93611 1.03110 1.01669 1.20194 0.96712 0.87753 1.04316 1.20529 1.05553 1.00058 0.84792 1.66264 1.14618 1.07189 1.30434 1.29089 1.03327 0.96459 1.02742 1.85108 1.59833 1.07636 1.00151 1.23574 1.12646 1.00501 0.88304 1.42208 1.62125 1.18202 1.00784 1.20279 0.78986 0.85522 0.86608 1.90777 1.43311 1.18685 1.84797 1.19372 0.79751 0.85520 0.85202 1.90791 1.45589 1.18408 1.85818 1.45482 1.64036 1.18565 1.04704 1.21052 1.04674 0.95760 0.79308 1.20399 0.84639 0.89601 0.83821 1.90521 1.54193 1.28040 1.78612 1.41799 1.57266 1.15823 1.04219 1.19709 1.43648 0.95968 0.87323 0.89725 1.26078 0.96235 0.99667 0.98931 1.69660 1.45793 1.23184 1.16661 0.84904 0.78675 0.77538 0.77114 1.19592 1.19612 1.19619 0.89991 0.93260 0.93033 0.89143 0.89425 0.75223 0.71920 0.73998 0.86892 0.86898 0.76434 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.13 16 2 C -0.05 -0.71 6.12 29.85 0.18 -0.52 16 3 C 0.03 0.53 6.03 41.71 0.25 0.78 16 4 N -0.47 -9.51 10.52 -190.98 -2.01 -11.52 16 5 C -0.02 -0.31 12.21 130.66 1.60 1.29 16 6 S 0.22 4.38 20.45 -56.49 -1.16 3.23 16 7 C -0.03 -0.69 7.17 82.63 0.59 -0.10 16 8 N -0.58 -11.99 5.38 -307.35 -1.65 -13.65 16 9 C 0.51 12.79 7.85 87.21 0.68 13.47 16 10 O -0.50 -14.54 14.10 -3.47 -0.05 -14.59 16 11 C 0.52 14.35 7.88 87.21 0.69 15.04 16 12 O -0.53 -15.12 16.47 -3.32 -0.05 -15.17 16 13 N -0.67 -20.79 5.52 -468.34 -2.59 -23.38 16 14 C 0.12 3.83 6.15 85.63 0.53 4.35 16 15 C 0.43 18.76 7.85 87.66 0.69 19.45 16 16 O -0.63 -31.81 15.24 -3.07 -0.05 -31.85 16 17 N -0.56 -26.58 5.29 -306.99 -1.62 -28.20 16 18 C -0.34 -18.08 9.68 84.04 0.81 -17.27 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 21 N -0.91 -46.97 13.05 21.66 0.28 -46.69 16 22 Si 0.99 40.95 29.55 68.60 2.03 42.98 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 0.99 7.22 -2.39 -0.02 0.97 16 31 H 0.23 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.44 7.27 7.09 -92.71 -0.66 6.61 16 33 H 0.42 14.16 6.90 -92.71 -0.64 13.52 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.40 18.11 7.90 -92.71 -0.73 17.37 16 37 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 Total: -1.00 -65.77 344.72 -0.52 -66.29 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.86 Total: 37.13 kcal Atomic # 6 Polarization: 28.21 SS G_CDS: 7.20 Total: 35.41 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -7.59 Total: -123.44 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -0.15 Total: -61.61 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.16 Total: 3.23 kcal Total: -65.77 -0.52 -66.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261093367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.677 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds