Wall clock time and date at job start Tue Mar 31 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99821 * 2 1 4 4 H 1.48498 * 109.47299 * 269.99646 * 3 2 1 5 5 H 1.48502 * 109.47456 * 29.99793 * 3 2 1 6 6 H 1.48506 * 109.47039 * 149.99577 * 3 2 1 7 7 C 1.38950 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99251 * 180.02562 * 7 2 1 9 9 N 1.37088 * 120.00488 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00122 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00023 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34800 * 116.99753 * 180.02562 * 13 12 10 15 15 O 1.21553 * 120.00246 * 359.97438 * 14 13 12 16 16 C 1.47118 * 119.99565 * 179.72432 * 14 13 12 17 17 C 1.35291 * 123.15038 * 180.29877 * 16 14 13 18 18 S 1.70944 * 108.81566 * 179.97438 * 17 16 14 19 19 C 1.70761 * 91.13937 * 359.97438 * 18 17 16 20 20 C 1.50701 * 124.70936 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.33629 * 197.22705 * 20 19 18 22 22 C 1.54481 * 110.37223 * 74.97543 * 20 19 18 23 23 C 1.54512 * 104.06044 * 217.18952 * 22 20 19 24 24 C 1.54472 * 104.06398 * 0.02562 * 23 22 20 25 25 O 1.44422 * 104.80724 * 23.97493 * 24 23 22 26 26 N 1.28624 * 110.58116 * 359.73030 * 19 18 17 27 27 H 0.96998 * 120.00128 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00140 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46698 * 60.00246 * 12 10 9 30 30 H 1.08997 * 109.47228 * 300.00075 * 12 10 9 31 31 H 1.08001 * 125.59501 * 359.97438 * 17 16 14 32 32 H 1.08991 * 110.51033 * 335.83810 * 22 20 19 33 33 H 1.08998 * 110.50680 * 98.41153 * 22 20 19 34 34 H 1.09001 * 110.50836 * 118.64730 * 23 22 20 35 35 H 1.08994 * 110.50878 * 241.21818 * 23 22 20 36 36 H 1.09002 * 110.37505 * 142.81014 * 24 23 22 37 37 H 1.09004 * 110.37288 * 265.03517 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8630 0.0011 13 8 2.1873 -5.9666 0.0016 14 6 1.6721 -7.2122 0.0016 15 8 0.4670 -7.3715 0.0017 16 6 2.5683 -8.3789 -0.0040 17 6 2.1207 -9.6556 -0.0102 18 16 3.4653 -10.7112 -0.0160 19 6 4.5463 -9.3893 -0.0106 20 6 6.0485 -9.5092 -0.0116 21 1 6.5039 -8.5676 0.2950 22 6 6.5542 -9.9201 -1.4123 23 6 7.7321 -10.8766 -1.1204 24 6 7.7982 -10.9309 0.4220 25 8 6.4674 -10.5814 0.8610 26 7 3.9003 -8.2770 -0.0107 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6168 -4.9208 -0.8886 30 1 0.6174 -4.9205 0.8913 31 1 1.0840 -9.9583 -0.0113 32 1 5.7700 -10.4374 -1.9649 33 1 6.8974 -9.0461 -1.9659 34 1 7.5301 -11.8668 -1.5288 35 1 8.6593 -10.4770 -1.5310 36 1 8.0560 -11.9361 0.7556 37 1 8.5246 -10.2097 0.7963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320206703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:37 Heat of formation + Delta-G solvation = -139.505393 kcal Electronic energy + Delta-G solvation = -24039.333958 eV Core-core repulsion = 20101.113497 eV Total energy + Delta-G solvation = -3938.220460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03557 -40.95291 -40.21940 -39.76973 -37.61223 -36.06318 -33.45610 -33.35549 -32.71108 -30.33018 -29.83514 -27.38213 -26.30727 -24.81142 -22.92150 -22.08518 -21.49406 -21.20666 -20.22385 -20.08165 -18.22725 -18.07723 -17.88326 -17.41741 -17.20871 -17.05467 -16.51591 -16.30706 -16.07724 -15.83326 -15.35254 -15.15227 -14.73659 -14.65040 -14.01737 -13.94192 -13.72284 -13.58028 -13.10696 -12.95691 -12.78736 -12.75563 -12.49940 -12.26143 -12.13674 -12.06320 -11.95037 -11.64342 -11.60346 -11.07415 -10.88076 -10.79672 -10.55106 -10.14207 -10.10571 -8.54193 -6.05043 -0.78465 0.05180 0.35698 0.44052 1.34171 1.35025 1.43752 1.56610 1.81243 1.85968 2.26548 2.37137 2.96363 3.10819 3.23543 3.45190 3.60753 3.82205 3.91912 3.92600 4.02308 4.10115 4.13701 4.18480 4.32441 4.36362 4.51774 4.72181 4.85992 4.95487 5.04262 5.06371 5.15666 5.34941 5.68830 5.85942 6.13992 6.44406 6.56952 7.00646 7.36670 7.91100 8.62957 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.002429 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.289729 B =11525.585638 C =12810.313660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.556 5.556 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.068 3.932 13 O -0.329 6.329 14 C 0.541 3.459 15 O -0.514 6.514 16 C -0.006 4.006 17 C -0.216 4.216 18 S 0.361 5.639 19 C -0.001 4.001 20 C 0.148 3.852 21 H 0.090 0.910 22 C -0.146 4.146 23 C -0.146 4.146 24 C 0.037 3.963 25 O -0.383 6.383 26 N -0.453 5.453 27 H 0.282 0.718 28 H 0.401 0.599 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.218 0.782 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.598 -27.624 -2.249 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.504 6.504 12 C -0.009 4.009 13 O -0.243 6.243 14 C 0.384 3.616 15 O -0.404 6.404 16 C -0.140 4.140 17 C -0.359 4.359 18 S 0.619 5.381 19 C -0.280 4.280 20 C 0.087 3.913 21 H 0.108 0.892 22 C -0.185 4.185 23 C -0.183 4.183 24 C -0.039 4.039 25 O -0.302 6.302 26 N -0.170 5.170 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.234 0.766 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.202 -28.141 -2.069 30.005 hybrid contribution -1.036 2.281 -0.004 2.505 sum 9.166 -25.861 -2.073 27.515 Atomic orbital electron populations 1.69672 1.06931 1.29793 1.49045 1.26148 0.96631 1.02587 0.95569 0.84841 0.77861 0.76235 0.78867 1.19327 1.19213 1.19642 1.19714 0.92910 0.83376 1.50801 0.89940 1.41712 1.09552 1.04058 1.64034 1.20059 0.88058 0.85369 0.84281 1.90542 1.15566 1.87649 1.56637 1.22650 0.90123 0.82357 1.05752 1.86733 1.40156 1.14478 1.82955 1.20292 0.86289 0.82696 0.72309 1.90836 1.15213 1.86871 1.47518 1.19085 0.88877 0.91703 1.14311 1.27224 1.09670 0.95670 1.03335 1.82483 0.89537 1.06678 1.59377 1.27081 1.02387 0.92600 1.05949 1.21304 0.84526 0.93197 0.92293 0.89190 1.23060 0.99614 1.01338 0.94451 1.22961 0.98642 1.00835 0.95892 1.23730 0.83050 1.02880 0.94217 1.89125 1.33266 1.52171 1.55653 1.66848 1.05861 1.30443 1.13814 0.90885 0.76462 0.87024 0.87146 0.76569 0.89763 0.89196 0.88661 0.88502 0.86377 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.44 13.05 21.66 0.28 -49.15 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 3 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.34 -19.65 9.68 84.04 0.81 -18.84 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -29.71 5.29 -306.99 -1.62 -31.33 16 10 C 0.44 22.70 7.86 87.66 0.69 23.39 16 11 O -0.62 -37.62 16.08 15.73 0.25 -37.37 16 12 C 0.07 2.81 5.96 71.24 0.42 3.24 16 13 O -0.33 -14.26 9.69 -50.72 -0.49 -14.75 16 14 C 0.54 19.96 7.94 70.15 0.56 20.51 16 15 O -0.51 -18.77 16.51 19.66 0.32 -18.45 16 16 C -0.01 -0.18 6.71 40.53 0.27 0.09 16 17 C -0.22 -4.57 10.62 67.14 0.71 -3.86 16 18 S 0.36 5.65 22.69 -56.49 -1.28 4.37 16 19 C 0.00 -0.03 6.26 88.58 0.55 0.53 16 20 C 0.15 2.88 3.82 30.35 0.12 3.00 16 21 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 22 C -0.15 -1.92 6.62 31.61 0.21 -1.71 16 23 C -0.15 -1.11 7.09 31.61 0.22 -0.89 16 24 C 0.04 0.37 7.63 72.48 0.55 0.92 16 25 O -0.38 -6.70 11.12 -148.98 -1.66 -8.36 16 26 N -0.45 -14.65 10.60 -180.91 -1.92 -16.56 16 27 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 29 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 31 H 0.22 3.44 8.03 -2.91 -0.02 3.42 16 32 H 0.08 1.00 7.86 -2.39 -0.02 0.98 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -78.21 345.96 1.91 -76.30 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.40 Total: 23.93 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 5.59 Total: 26.38 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.26 Total: -97.05 kcal Atomic # 8 Polarization: -77.36 SS G_CDS: -1.57 Total: -78.93 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.28 Total: 4.37 kcal Total: -78.21 1.91 -76.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320206703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.206 kcal (2) G-P(sol) polarization free energy of solvation -78.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds