Wall clock time and date at job start Tue Mar 31 2020 04:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 108.57446 * 2 1 4 4 O 1.42094 * 108.57925 * 228.97542 * 2 1 3 5 5 C 1.81398 * 101.92395 * 114.48379 * 2 1 3 6 6 C 1.50700 * 109.47310 * 180.02562 * 5 2 1 7 7 O 1.21284 * 119.99932 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 2 9 9 N 1.40102 * 119.99895 * 180.02562 * 8 6 5 10 10 C 1.34778 * 119.99895 * 179.97438 * 9 8 6 11 11 O 1.21582 * 119.99883 * 359.97438 * 10 9 8 12 12 C 1.47635 * 119.99858 * 179.97438 * 10 9 8 13 13 C 1.40024 * 119.89960 * 0.26958 * 12 10 9 14 14 C 1.36306 * 120.10731 * 180.28002 * 13 12 10 15 15 C 1.40885 * 119.89590 * 359.45236 * 14 13 12 16 16 C 1.41111 * 120.10921 * 180.30311 * 15 14 13 17 17 H 1.07994 * 120.00597 * 154.53119 * 16 15 14 18 18 C 1.40227 * 119.99382 * 334.52933 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.05813 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.06034 * 18 16 15 21 21 H 1.48501 * 109.47101 * 89.99684 * 20 18 16 22 22 H 1.48501 * 109.47179 * 209.99729 * 20 18 16 23 23 H 1.48501 * 109.46949 * 330.00066 * 20 18 16 24 24 C 1.40889 * 119.79071 * 0.27404 * 15 14 13 25 25 C 1.36313 * 119.89283 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47030 * 305.50905 * 1 2 3 27 27 H 1.08996 * 109.47501 * 65.51439 * 1 2 3 28 28 H 1.09004 * 109.46357 * 185.51372 * 1 2 3 29 29 H 1.09003 * 109.47126 * 60.00502 * 5 2 1 30 30 H 1.09001 * 109.47581 * 300.00399 * 5 2 1 31 31 H 0.97004 * 120.00051 * 359.97438 * 8 6 5 32 32 H 0.97002 * 119.99912 * 359.97438 * 9 8 6 33 33 H 1.07996 * 119.94188 * 0.02562 * 13 12 10 34 34 H 1.08006 * 120.05292 * 179.72744 * 14 13 12 35 35 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.05483 * 180.02562 * 24 15 14 37 37 H 1.08005 * 119.95074 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1888 -0.7356 1.6152 6 6 3.6827 -0.8170 1.7957 7 8 4.4219 -0.4177 0.9209 8 7 4.1975 -1.3336 2.9291 9 7 5.5863 -1.4089 3.0971 10 6 6.1010 -1.9250 4.2308 11 8 5.3601 -2.3249 5.1078 12 6 7.5646 -2.0048 4.4075 13 6 8.4160 -1.5385 3.3984 14 6 9.7679 -1.6153 3.5547 15 6 10.3083 -2.1544 4.7388 16 6 11.7072 -2.2303 4.9080 17 1 12.1313 -2.2405 5.9011 18 6 12.5466 -2.2924 3.7865 19 7 12.0545 -2.6109 2.6190 20 14 14.3686 -1.9196 3.9618 21 1 15.1027 -3.1728 4.2713 22 1 14.8812 -1.3465 2.6913 23 1 14.5704 -0.9432 5.0623 24 6 9.4477 -2.6171 5.7538 25 6 8.0970 -2.5418 5.5859 26 1 -0.3633 0.5969 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3632 -1.0230 0.0987 29 1 1.7612 -1.7369 1.6665 30 1 1.7611 -0.1170 2.4043 31 1 3.6063 -1.6527 3.6289 32 1 6.1775 -1.0895 2.3975 33 1 8.0008 -1.1210 2.4930 34 1 10.4237 -1.2594 2.7739 35 1 12.6351 -2.6535 1.8431 36 1 9.8574 -3.0308 6.6634 37 1 7.4364 -2.8958 6.3635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330168994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:59 Heat of formation + Delta-G solvation = -85.296053 kcal Electronic energy + Delta-G solvation = -24138.134938 eV Core-core repulsion = 20202.265172 eV Total energy + Delta-G solvation = -3935.869767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32116 -38.89043 -37.26136 -37.24969 -36.26393 -35.17437 -33.98460 -32.31632 -30.75328 -29.96913 -29.56432 -29.05548 -25.91766 -22.48130 -21.74926 -20.99435 -20.28652 -19.12595 -18.15428 -17.67739 -17.58238 -16.79484 -16.69199 -16.31278 -15.83175 -15.54781 -15.47043 -14.52545 -14.31261 -14.09236 -14.03312 -13.72465 -13.66664 -13.32877 -13.13555 -12.88384 -12.30729 -12.24187 -12.20319 -12.06569 -11.56186 -11.52826 -11.32631 -11.23703 -11.20407 -11.02341 -10.73023 -10.66685 -10.17933 -9.65664 -9.45072 -9.34144 -8.28406 -7.82000 -7.64032 -7.11287 -4.69857 -0.51906 1.89938 1.95209 2.20638 2.33544 2.86051 2.91752 2.95663 2.97232 3.30003 3.60174 3.66079 3.71026 3.85230 4.20676 4.32226 4.45035 4.52926 4.62247 4.70026 5.15822 5.46455 5.67288 5.96559 6.19878 6.61902 6.69217 6.74192 6.76681 6.91452 7.02224 7.33465 7.50291 7.63732 7.76683 7.82939 7.93118 7.97590 8.30618 8.53384 8.64780 8.79358 9.80261 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.002321 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.453381 B =12062.792466 C =13020.830971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.459 3.541 3 O -0.918 6.918 4 O -0.918 6.918 5 C -0.653 4.653 6 C 0.534 3.466 7 O -0.532 6.532 8 N -0.504 5.504 9 N -0.536 5.536 10 C 0.576 3.424 11 O -0.576 6.576 12 C -0.283 4.283 13 C -0.062 4.062 14 C -0.175 4.175 15 C 0.130 3.870 16 C -0.435 4.435 17 H 0.087 0.913 18 C 0.072 3.928 19 N -0.766 5.766 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.238 4.238 25 C -0.015 4.015 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.432 0.568 32 H 0.432 0.568 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 3.263 -3.308 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.634 3.366 3 O -0.915 6.915 4 O -0.915 6.915 5 C -0.780 4.780 6 C 0.318 3.682 7 O -0.408 6.408 8 N -0.249 5.249 9 N -0.287 5.287 10 C 0.373 3.627 11 O -0.457 6.457 12 C -0.289 4.289 13 C -0.081 4.081 14 C -0.194 4.194 15 C 0.126 3.874 16 C -0.462 4.462 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.388 5.388 20 Si 0.739 3.261 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.180 1.180 24 C -0.257 4.257 25 C -0.035 4.035 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.274 0.726 32 H 0.276 0.724 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.580 3.487 -4.177 18.403 hybrid contribution 0.016 -0.305 0.671 0.737 sum -17.564 3.182 -3.506 18.192 Atomic orbital electron populations 1.30395 1.26790 1.11770 1.12181 1.07160 0.77582 0.75845 0.76010 1.93612 1.78743 1.33953 1.85213 1.93613 1.78727 1.67204 1.51945 1.30876 1.01346 1.16984 1.28827 1.19133 0.88035 0.79035 0.82037 1.90905 1.60274 1.48654 1.41016 1.44483 0.98104 1.62562 1.19756 1.45307 0.93321 1.67504 1.22589 1.18902 0.89519 0.75363 0.78909 1.90644 1.61429 1.51415 1.42204 1.18523 0.87686 1.22306 1.00405 1.20513 0.94414 0.97596 0.95574 1.20987 0.93248 1.04891 1.00249 1.17825 0.93162 0.85612 0.90778 1.19904 0.91253 1.40834 0.94194 0.89485 1.26153 1.02463 0.91915 0.94490 1.69728 1.38956 1.29271 1.00866 0.86174 0.80570 0.79995 0.79396 1.19074 1.19677 1.18044 1.20709 0.92533 1.10834 1.01659 1.20306 0.94772 0.94045 0.94327 0.85137 0.84769 0.85132 0.81850 0.81859 0.72607 0.72391 0.89072 0.85967 0.89947 0.88101 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.75 10.62 101.05 1.07 -0.67 16 2 S 2.46 20.18 4.60 -107.50 -0.49 19.69 16 3 O -0.92 -11.68 17.94 -59.55 -1.07 -12.75 16 4 O -0.92 -11.74 17.95 -59.51 -1.07 -12.81 16 5 C -0.65 -4.13 6.29 36.01 0.23 -3.91 16 6 C 0.53 7.03 7.97 -10.98 -0.09 6.95 16 7 O -0.53 -9.27 15.46 2.56 0.04 -9.23 16 8 N -0.50 -7.08 6.26 31.22 0.20 -6.88 16 9 N -0.54 -9.42 6.21 30.48 0.19 -9.23 16 10 C 0.58 11.75 7.88 -12.42 -0.10 11.66 16 11 O -0.58 -12.48 16.16 5.29 0.09 -12.39 16 12 C -0.28 -6.26 5.89 -104.73 -0.62 -6.88 16 13 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 14 C -0.17 -4.22 8.63 -39.28 -0.34 -4.55 16 15 C 0.13 3.21 5.57 -106.80 -0.59 2.62 16 16 C -0.43 -10.49 9.05 -37.75 -0.34 -10.83 16 17 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 18 C 0.07 1.64 5.15 -17.31 -0.09 1.55 16 19 N -0.77 -18.07 10.95 55.56 0.61 -17.46 16 20 Si 0.92 16.91 29.59 -169.99 -5.03 11.88 16 21 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 24 C -0.24 -5.53 9.73 -39.27 -0.38 -5.91 16 25 C -0.02 -0.34 9.52 -39.61 -0.38 -0.72 16 26 H 0.13 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.13 0.07 8.14 -51.92 -0.42 -0.36 16 29 H 0.16 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.16 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.43 5.03 8.00 -182.59 -1.46 3.57 16 32 H 0.43 7.56 6.00 -182.59 -1.10 6.46 16 33 H 0.09 1.77 6.37 -52.49 -0.33 1.44 16 34 H 0.12 3.01 6.18 -52.48 -0.32 2.68 16 35 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 36 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.10 2.20 7.63 -52.48 -0.40 1.79 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -36.53 341.36 -9.10 -45.63 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.70 Total: 10.85 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.00 Total: -12.43 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.99 Total: -33.57 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -2.01 Total: -47.18 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 20.18 SS G_CDS: -0.49 Total: 19.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.53 -9.10 -45.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330168994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.669 kcal (2) G-P(sol) polarization free energy of solvation -36.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds