Wall clock time and date at job start Tue Mar 31 2020 04:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 108.57446 * 2 1 4 4 O 1.42094 * 108.57925 * 228.97542 * 2 1 3 5 5 C 1.81398 * 101.92395 * 114.48379 * 2 1 3 6 6 C 1.50700 * 109.47310 * 180.02562 * 5 2 1 7 7 O 1.21284 * 119.99932 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 2 9 9 N 1.40102 * 119.99895 * 180.02562 * 8 6 5 10 10 C 1.34778 * 119.99895 * 179.97438 * 9 8 6 11 11 O 1.21582 * 119.99883 * 359.97438 * 10 9 8 12 12 C 1.47635 * 119.99858 * 179.97438 * 10 9 8 13 13 C 1.40024 * 119.89960 * 0.26958 * 12 10 9 14 14 C 1.36306 * 120.10731 * 180.28002 * 13 12 10 15 15 C 1.40885 * 119.89590 * 359.45236 * 14 13 12 16 16 C 1.41111 * 120.10921 * 180.30311 * 15 14 13 17 17 H 1.07994 * 120.00597 * 154.53119 * 16 15 14 18 18 C 1.40227 * 119.99382 * 334.52933 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.05813 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.06034 * 18 16 15 21 21 H 1.48501 * 109.47101 * 89.99684 * 20 18 16 22 22 H 1.48501 * 109.47179 * 209.99729 * 20 18 16 23 23 H 1.48501 * 109.46949 * 330.00066 * 20 18 16 24 24 C 1.40889 * 119.79071 * 0.27404 * 15 14 13 25 25 C 1.36313 * 119.89283 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47030 * 305.50905 * 1 2 3 27 27 H 1.08996 * 109.47501 * 65.51439 * 1 2 3 28 28 H 1.09004 * 109.46357 * 185.51372 * 1 2 3 29 29 H 1.09003 * 109.47126 * 60.00502 * 5 2 1 30 30 H 1.09001 * 109.47581 * 300.00399 * 5 2 1 31 31 H 0.97004 * 120.00051 * 359.97438 * 8 6 5 32 32 H 0.97002 * 119.99912 * 359.97438 * 9 8 6 33 33 H 1.07996 * 119.94188 * 0.02562 * 13 12 10 34 34 H 1.08006 * 120.05292 * 179.72744 * 14 13 12 35 35 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.05483 * 180.02562 * 24 15 14 37 37 H 1.08005 * 119.95074 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1888 -0.7356 1.6152 6 6 3.6827 -0.8170 1.7957 7 8 4.4219 -0.4177 0.9209 8 7 4.1975 -1.3336 2.9291 9 7 5.5863 -1.4089 3.0971 10 6 6.1010 -1.9250 4.2308 11 8 5.3601 -2.3249 5.1078 12 6 7.5646 -2.0048 4.4075 13 6 8.4160 -1.5385 3.3984 14 6 9.7679 -1.6153 3.5547 15 6 10.3083 -2.1544 4.7388 16 6 11.7072 -2.2303 4.9080 17 1 12.1313 -2.2405 5.9011 18 6 12.5466 -2.2924 3.7865 19 7 12.0545 -2.6109 2.6190 20 14 14.3686 -1.9196 3.9618 21 1 15.1027 -3.1728 4.2713 22 1 14.8812 -1.3465 2.6913 23 1 14.5704 -0.9432 5.0623 24 6 9.4477 -2.6171 5.7538 25 6 8.0970 -2.5418 5.5859 26 1 -0.3633 0.5969 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3632 -1.0230 0.0987 29 1 1.7612 -1.7369 1.6665 30 1 1.7611 -0.1170 2.4043 31 1 3.6063 -1.6527 3.6289 32 1 6.1775 -1.0895 2.3975 33 1 8.0008 -1.1210 2.4930 34 1 10.4237 -1.2594 2.7739 35 1 12.6351 -2.6535 1.8431 36 1 9.8574 -3.0308 6.6634 37 1 7.4364 -2.8958 6.3635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330168994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:59 Heat of formation + Delta-G solvation = -115.501822 kcal Electronic energy + Delta-G solvation = -24139.444759 eV Core-core repulsion = 20202.265172 eV Total energy + Delta-G solvation = -3937.179587 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60293 -40.38563 -38.96562 -38.00425 -37.01282 -36.54009 -35.73327 -33.53795 -32.07992 -31.36545 -30.68670 -29.92334 -27.63453 -24.09951 -23.08938 -22.63461 -21.81964 -19.81815 -19.44363 -19.28003 -18.92481 -17.82683 -17.42442 -17.29204 -17.18071 -16.74209 -16.52545 -15.96092 -15.77179 -15.70967 -15.19118 -15.11122 -14.55218 -13.97119 -13.93517 -13.87108 -13.81246 -13.74488 -13.31341 -13.07205 -13.01312 -12.86632 -12.76510 -12.52680 -12.38937 -12.17662 -11.84594 -11.81546 -11.67670 -11.42797 -11.16512 -11.00807 -9.74338 -9.60815 -9.38563 -8.83054 -6.52919 -1.07121 0.30025 0.72347 1.09361 1.12561 1.37731 1.41999 1.54496 1.82116 2.00267 2.15183 2.54259 2.71388 3.09315 3.10811 3.46632 3.63553 3.94362 4.05670 4.16941 4.23428 4.29026 4.34779 4.41063 4.89978 4.98194 5.04000 5.08921 5.22663 5.43964 5.45830 5.56790 5.78946 5.88321 5.95408 6.17211 6.38535 6.49748 6.67950 6.72395 6.83059 7.26262 8.11626 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.002321 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.453381 B =12062.792466 C =13020.830971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.436 3.564 3 O -0.982 6.982 4 O -0.983 6.983 5 C -0.636 4.636 6 C 0.524 3.476 7 O -0.581 6.581 8 N -0.500 5.500 9 N -0.536 5.536 10 C 0.582 3.418 11 O -0.588 6.588 12 C -0.291 4.291 13 C -0.058 4.058 14 C -0.197 4.197 15 C 0.103 3.897 16 C -0.464 4.464 17 H 0.092 0.908 18 C 0.035 3.965 19 N -0.797 5.797 20 Si 0.989 3.011 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.255 1.255 24 C -0.248 4.248 25 C -0.021 4.021 26 H 0.166 0.834 27 H 0.142 0.858 28 H 0.165 0.835 29 H 0.213 0.787 30 H 0.214 0.786 31 H 0.444 0.556 32 H 0.431 0.569 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.298 0.702 36 H 0.112 0.888 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.908 3.146 -2.636 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.620 3.380 3 O -0.980 6.980 4 O -0.980 6.980 5 C -0.765 4.765 6 C 0.311 3.689 7 O -0.461 6.461 8 N -0.248 5.248 9 N -0.285 5.285 10 C 0.377 3.623 11 O -0.470 6.470 12 C -0.297 4.297 13 C -0.077 4.077 14 C -0.216 4.216 15 C 0.099 3.901 16 C -0.491 4.491 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.420 5.420 20 Si 0.809 3.191 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.178 1.178 24 C -0.268 4.268 25 C -0.041 4.041 26 H 0.184 0.816 27 H 0.161 0.839 28 H 0.184 0.816 29 H 0.230 0.770 30 H 0.231 0.769 31 H 0.289 0.711 32 H 0.275 0.725 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.235 3.376 -3.526 20.816 hybrid contribution 0.588 -0.280 0.452 0.793 sum -19.647 3.096 -3.074 20.126 Atomic orbital electron populations 1.30070 1.18124 1.15016 1.14309 1.07285 0.80730 0.74005 0.75983 1.93538 1.81788 1.36481 1.86144 1.93539 1.81790 1.67892 1.54788 1.30882 0.96060 1.20779 1.28743 1.20394 0.90759 0.77149 0.80588 1.90899 1.62352 1.50324 1.42512 1.44735 0.96041 1.63159 1.20816 1.45033 0.95821 1.66153 1.21463 1.18474 0.88748 0.75597 0.79507 1.90627 1.61495 1.52114 1.42795 1.18790 0.89175 1.21555 1.00144 1.20696 0.93814 0.96854 0.96341 1.20992 0.94000 1.06300 1.00349 1.18169 0.94092 0.86329 0.91470 1.20187 0.91574 1.42225 0.95113 0.89032 1.27007 1.06805 0.90974 0.93711 1.69765 1.40863 1.29638 1.01728 0.85083 0.74722 0.79873 0.79463 1.18332 1.18950 1.17833 1.20888 0.92898 1.11063 1.01935 1.20490 0.94727 0.93965 0.94875 0.81610 0.83949 0.81645 0.76967 0.76907 0.71109 0.72516 0.87051 0.87088 0.89116 0.86992 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -0.03 10.62 113.37 1.20 1.18 16 2 S 2.44 36.40 4.60 -56.49 -0.26 36.14 16 3 O -0.98 -25.43 17.94 -125.73 -2.26 -27.68 16 4 O -0.98 -25.63 17.95 -125.77 -2.26 -27.88 16 5 C -0.64 -5.66 6.29 71.24 0.45 -5.21 16 6 C 0.52 13.08 7.97 87.66 0.70 13.77 16 7 O -0.58 -20.72 15.46 -0.18 0.00 -20.72 16 8 N -0.50 -13.17 6.26 -173.53 -1.09 -14.26 16 9 N -0.54 -18.56 6.21 -175.74 -1.09 -19.66 16 10 C 0.58 23.39 7.88 86.72 0.68 24.07 16 11 O -0.59 -24.75 16.16 -3.97 -0.06 -24.82 16 12 C -0.29 -12.95 5.89 -19.93 -0.12 -13.06 16 13 C -0.06 -2.61 9.47 22.25 0.21 -2.40 16 14 C -0.20 -9.86 8.63 22.47 0.19 -9.67 16 15 C 0.10 5.25 5.57 -21.28 -0.12 5.13 16 16 C -0.46 -22.96 9.05 23.46 0.21 -22.75 16 17 H 0.09 4.27 7.90 -2.91 -0.02 4.25 16 18 C 0.03 1.59 5.15 85.35 0.44 2.03 16 19 N -0.80 -38.46 10.95 21.87 0.24 -38.22 16 20 Si 0.99 34.63 29.59 68.60 2.03 36.66 16 21 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 22 H -0.27 -8.90 7.11 99.48 0.71 -8.20 16 23 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 24 C -0.25 -11.79 9.73 22.47 0.22 -11.57 16 25 C -0.02 -0.96 9.52 22.25 0.21 -0.75 16 26 H 0.17 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.17 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H 0.21 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.21 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.44 9.13 8.00 -213.31 -1.71 7.42 16 32 H 0.43 15.22 6.00 -213.32 -1.28 13.94 16 33 H 0.11 4.43 6.37 -2.91 -0.02 4.41 16 34 H 0.11 5.71 6.18 -2.91 -0.02 5.70 16 35 H 0.30 12.85 8.29 -92.70 -0.77 12.08 16 36 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.11 4.85 7.63 -2.91 -0.02 4.82 16 Total: -1.00 -86.61 341.36 -2.30 -88.91 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -1.84 Total: 30.75 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 4.28 Total: -19.22 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.94 Total: -72.14 kcal Atomic # 8 Polarization: -96.52 SS G_CDS: -4.58 Total: -101.10 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: 36.40 SS G_CDS: -0.26 Total: 36.14 kcal Total: -86.61 -2.30 -88.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330168994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.593 kcal (2) G-P(sol) polarization free energy of solvation -86.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds