Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48498 * 109.46898 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.46936 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.46925 * 150.00029 * 3 2 1 7 7 C 1.37874 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99846 * 172.23666 * 7 2 1 9 9 C 1.50693 * 120.00327 * 352.23443 * 7 2 1 10 10 C 1.53004 * 115.55085 * 84.78416 * 9 7 2 11 11 S 1.81401 * 109.47124 * 65.19431 * 10 9 7 12 12 O 1.42104 * 110.54076 * 62.18388 * 11 10 9 13 13 O 1.42097 * 110.54368 * 285.43706 * 11 10 9 14 14 N 1.65598 * 104.44942 * 173.80914 * 11 10 9 15 15 C 1.46499 * 119.99908 * 64.72687 * 14 11 10 16 16 C 1.50704 * 109.47081 * 165.27477 * 15 14 11 17 17 O 1.21281 * 119.99953 * 0.02562 * 16 15 14 18 18 N 1.34769 * 119.99851 * 179.97438 * 16 15 14 19 19 C 1.46497 * 120.00151 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47503 * 180.02562 * 19 18 16 21 21 F 1.39895 * 109.47237 * 300.00081 * 20 19 18 22 22 F 1.39905 * 109.47076 * 60.00271 * 20 19 18 23 23 C 1.53000 * 117.50236 * 230.45593 * 9 7 2 24 24 C 1.53005 * 117.50046 * 299.11190 * 9 7 2 25 25 H 0.97003 * 120.00122 * 5.03511 * 1 2 3 26 26 H 1.08992 * 109.46973 * 305.19547 * 10 9 7 27 27 H 1.09002 * 109.47083 * 185.19646 * 10 9 7 28 28 H 0.97001 * 119.99700 * 245.00306 * 14 11 10 29 29 H 1.08998 * 109.46807 * 285.27522 * 15 14 11 30 30 H 1.09001 * 109.46891 * 45.27624 * 15 14 11 31 31 H 0.96998 * 120.00103 * 0.02562 * 18 16 15 32 32 H 1.09005 * 109.47393 * 300.00498 * 19 18 16 33 33 H 1.08996 * 109.47356 * 59.99923 * 19 18 16 34 34 H 1.09003 * 109.47272 * 179.97438 * 20 19 18 35 35 H 1.08999 * 117.50399 * 215.00328 * 23 9 7 36 36 H 1.09006 * 117.49780 * 0.02562 * 23 9 7 37 37 H 1.09000 * 117.49458 * 359.97438 * 24 9 7 38 38 H 1.09000 * 117.49939 * 144.97104 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1258 9 6 1.2614 -2.4930 0.1774 10 6 0.6670 -3.0924 -1.0987 11 16 2.0072 -3.5642 -2.2264 12 8 2.8269 -4.5637 -1.6361 13 8 2.5779 -2.4124 -2.8321 14 7 1.2440 -4.3447 -3.4716 15 6 0.3133 -3.6126 -4.3342 16 6 0.0393 -4.4199 -5.5769 17 8 0.5688 -5.5006 -5.7270 18 7 -0.7950 -3.9414 -6.5209 19 6 -1.0610 -4.7259 -7.7292 20 6 -2.0331 -3.9614 -8.6300 21 9 -3.2318 -3.7426 -7.9429 22 9 -1.4691 -2.7318 -8.9871 23 6 1.7803 -3.4649 1.2391 24 6 0.4826 -2.6898 1.4797 25 1 -0.4850 0.8368 -0.0737 26 1 0.0275 -2.3544 -1.5829 27 1 0.0776 -3.9738 -0.8458 28 1 1.4101 -5.2876 -3.6273 29 1 -0.6205 -3.4417 -3.7986 30 1 0.7530 -2.6549 -4.6127 31 1 -1.2189 -3.0772 -6.4007 32 1 -0.1271 -4.8961 -8.2649 33 1 -1.5000 -5.6840 -7.4511 34 1 -2.2306 -4.5449 -9.5293 35 1 1.6983 -4.5312 1.0285 36 1 2.6591 -3.1645 1.8099 37 1 0.5081 -1.8797 2.2085 38 1 -0.4535 -3.2457 1.4272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414267097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = -188.423053 kcal Electronic energy + Delta-G solvation = -25908.378236 eV Core-core repulsion = 21549.640111 eV Total energy + Delta-G solvation = -4358.738124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.46918 -47.45898 -39.99693 -36.77509 -36.29244 -35.49791 -35.12365 -34.46602 -32.06446 -30.41178 -28.20207 -26.87567 -25.47348 -23.31421 -21.22427 -21.13369 -19.81834 -18.85219 -18.14727 -17.99526 -17.87706 -16.96419 -16.50785 -16.32975 -15.91813 -15.79414 -15.16806 -15.06055 -14.72066 -14.45793 -14.30296 -13.91033 -13.80705 -13.72645 -13.48637 -13.11560 -12.92488 -12.70765 -11.97613 -11.84884 -11.68581 -11.46999 -11.30782 -11.18721 -11.03787 -10.95450 -10.59945 -10.47051 -10.26152 -10.14853 -9.78934 -9.63659 -9.33342 -8.97371 -8.58339 -8.11913 -6.16501 -4.26829 0.99572 2.30306 2.58721 3.16069 3.29594 3.35162 3.40742 3.42419 3.65591 4.03571 4.22689 4.35603 4.40826 4.52405 4.93648 4.98958 5.01280 5.11077 5.19042 5.19131 5.27085 5.50643 5.82061 5.88579 5.97598 6.23636 6.35153 6.58428 6.71737 6.95562 6.96937 7.20224 7.28517 7.37977 7.78385 7.80548 8.18391 8.79010 9.44503 10.91128 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.014535 B = 0.003376 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.956609 B = 8291.520716 C = 9219.998922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.083 3.917 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.555 4.555 11 S 2.608 3.392 12 O -0.967 6.967 13 O -0.949 6.949 14 N -1.123 6.123 15 C 0.099 3.901 16 C 0.522 3.478 17 O -0.529 6.529 18 N -0.731 5.731 19 C 0.070 3.930 20 C 0.254 3.746 21 F -0.200 7.200 22 F -0.200 7.200 23 C -0.208 4.208 24 C -0.141 4.141 25 H 0.263 0.737 26 H 0.134 0.866 27 H 0.101 0.899 28 H 0.419 0.581 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.410 0.590 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 -8.133 -15.372 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.122 4.122 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.688 4.688 11 S 2.705 3.295 12 O -0.958 6.958 13 O -0.939 6.939 14 N -0.882 5.882 15 C -0.031 4.031 16 C 0.307 3.693 17 O -0.404 6.404 18 N -0.386 5.386 19 C -0.055 4.055 20 C 0.200 3.800 21 F -0.181 7.181 22 F -0.181 7.181 23 C -0.245 4.245 24 C -0.180 4.180 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.120 0.880 28 H 0.255 0.745 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.246 0.754 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.144 0.856 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.647 -8.437 -15.370 18.751 hybrid contribution -0.729 1.059 0.017 1.286 sum -7.376 -7.378 -15.353 18.562 Atomic orbital electron populations 1.69976 1.06029 1.27195 1.47879 1.24945 0.94802 0.99205 0.93290 0.86580 0.80159 0.82779 0.78666 1.20041 1.21088 1.19427 1.20535 0.93741 0.88587 1.52435 0.91313 1.18277 0.99086 0.94373 0.84270 1.30000 1.16476 1.08561 1.13762 1.05195 0.76483 0.73656 0.74127 1.93521 1.65190 1.59452 1.77634 1.93535 1.74884 1.50924 1.74510 1.55884 1.61403 1.23575 1.47336 1.21012 0.95860 0.96270 0.89986 1.20666 0.77699 0.86593 0.84335 1.90699 1.49684 1.21704 1.78311 1.45712 1.49110 1.23787 1.19996 1.22500 1.00246 0.95982 0.86740 1.22235 0.79593 0.82740 0.95405 1.93033 1.47740 1.95516 1.81854 1.93041 1.85194 1.47140 1.92719 1.23206 0.98687 0.96086 1.06551 1.22555 0.92596 1.01032 1.01804 0.92731 0.84794 0.88038 0.74523 0.88322 0.86766 0.75402 0.88139 0.88138 0.85571 0.90608 0.89489 0.89571 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.36 12.98 55.43 0.72 -22.64 16 2 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 3 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.83 8.18 -34.44 -0.28 -14.11 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 C 0.04 1.01 1.32 -155.66 -0.21 0.80 16 10 C -0.55 -11.14 5.92 37.16 0.22 -10.92 16 11 S 2.61 51.85 5.19 -107.50 -0.56 51.29 16 12 O -0.97 -21.39 18.08 -57.54 -1.04 -22.43 16 13 O -0.95 -21.98 17.18 -57.54 -0.99 -22.96 16 14 N -1.12 -17.30 5.82 -11.65 -0.07 -17.37 16 15 C 0.10 1.24 6.60 -5.19 -0.03 1.20 16 16 C 0.52 6.21 7.90 -10.99 -0.09 6.13 16 17 O -0.53 -7.86 15.73 5.56 0.09 -7.77 16 18 N -0.73 -6.32 5.42 -60.30 -0.33 -6.65 16 19 C 0.07 0.45 5.91 -4.05 -0.02 0.42 16 20 C 0.25 1.28 5.42 37.16 0.20 1.48 16 21 F -0.20 -1.47 17.20 2.25 0.04 -1.43 16 22 F -0.20 -1.52 17.20 2.25 0.04 -1.48 16 23 C -0.21 -4.51 9.96 -26.70 -0.27 -4.78 16 24 C -0.14 -3.14 9.49 -26.69 -0.25 -3.39 16 25 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 26 H 0.13 2.70 8.14 -51.93 -0.42 2.27 16 27 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 28 H 0.42 6.24 7.67 -34.47 -0.26 5.98 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.11 1.39 7.71 -51.93 -0.40 0.99 16 31 H 0.41 2.93 8.36 -40.82 -0.34 2.59 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 37 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -35.33 352.98 -7.40 -42.74 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.78 Total: 8.51 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.83 Total: -21.07 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.33 Total: -46.66 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -1.94 Total: -53.16 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.56 Total: 51.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.33 -7.40 -42.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414267097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.687 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds