Wall clock time and date at job start Tue Mar 31 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99924 * 2 1 4 4 H 1.48498 * 109.46898 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.46936 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.46925 * 150.00029 * 3 2 1 7 7 C 1.37874 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99846 * 172.23666 * 7 2 1 9 9 C 1.50693 * 120.00327 * 352.23443 * 7 2 1 10 10 C 1.53004 * 115.55085 * 84.78416 * 9 7 2 11 11 S 1.81401 * 109.47124 * 65.19431 * 10 9 7 12 12 O 1.42104 * 110.54076 * 62.18388 * 11 10 9 13 13 O 1.42097 * 110.54368 * 285.43706 * 11 10 9 14 14 N 1.65598 * 104.44942 * 173.80914 * 11 10 9 15 15 C 1.46499 * 119.99908 * 64.72687 * 14 11 10 16 16 C 1.50704 * 109.47081 * 165.27477 * 15 14 11 17 17 O 1.21281 * 119.99953 * 0.02562 * 16 15 14 18 18 N 1.34769 * 119.99851 * 179.97438 * 16 15 14 19 19 C 1.46497 * 120.00151 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47503 * 180.02562 * 19 18 16 21 21 F 1.39895 * 109.47237 * 300.00081 * 20 19 18 22 22 F 1.39905 * 109.47076 * 60.00271 * 20 19 18 23 23 C 1.53000 * 117.50236 * 230.45593 * 9 7 2 24 24 C 1.53005 * 117.50046 * 299.11190 * 9 7 2 25 25 H 0.97003 * 120.00122 * 5.03511 * 1 2 3 26 26 H 1.08992 * 109.46973 * 305.19547 * 10 9 7 27 27 H 1.09002 * 109.47083 * 185.19646 * 10 9 7 28 28 H 0.97001 * 119.99700 * 245.00306 * 14 11 10 29 29 H 1.08998 * 109.46807 * 285.27522 * 15 14 11 30 30 H 1.09001 * 109.46891 * 45.27624 * 15 14 11 31 31 H 0.96998 * 120.00103 * 0.02562 * 18 16 15 32 32 H 1.09005 * 109.47393 * 300.00498 * 19 18 16 33 33 H 1.08996 * 109.47356 * 59.99923 * 19 18 16 34 34 H 1.09003 * 109.47272 * 179.97438 * 20 19 18 35 35 H 1.08999 * 117.50399 * 215.00328 * 23 9 7 36 36 H 1.09006 * 117.49780 * 0.02562 * 23 9 7 37 37 H 1.09000 * 117.49458 * 359.97438 * 24 9 7 38 38 H 1.09000 * 117.49939 * 144.97104 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1258 9 6 1.2614 -2.4930 0.1774 10 6 0.6670 -3.0924 -1.0987 11 16 2.0072 -3.5642 -2.2264 12 8 2.8269 -4.5637 -1.6361 13 8 2.5779 -2.4124 -2.8321 14 7 1.2440 -4.3447 -3.4716 15 6 0.3133 -3.6126 -4.3342 16 6 0.0393 -4.4199 -5.5769 17 8 0.5688 -5.5006 -5.7270 18 7 -0.7950 -3.9414 -6.5209 19 6 -1.0610 -4.7259 -7.7292 20 6 -2.0331 -3.9614 -8.6300 21 9 -3.2318 -3.7426 -7.9429 22 9 -1.4691 -2.7318 -8.9871 23 6 1.7803 -3.4649 1.2391 24 6 0.4826 -2.6898 1.4797 25 1 -0.4850 0.8368 -0.0737 26 1 0.0275 -2.3544 -1.5829 27 1 0.0776 -3.9738 -0.8458 28 1 1.4101 -5.2876 -3.6273 29 1 -0.6205 -3.4417 -3.7986 30 1 0.7530 -2.6549 -4.6127 31 1 -1.2189 -3.0772 -6.4007 32 1 -0.1271 -4.8961 -8.2649 33 1 -1.5000 -5.6840 -7.4511 34 1 -2.2306 -4.5449 -9.5293 35 1 1.6983 -4.5312 1.0285 36 1 2.6591 -3.1645 1.8099 37 1 0.5081 -1.8797 2.2085 38 1 -0.4535 -3.2457 1.4272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414267097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:44 Heat of formation + Delta-G solvation = -216.434682 kcal Electronic energy + Delta-G solvation = -25909.592911 eV Core-core repulsion = 21549.640111 eV Total energy + Delta-G solvation = -4359.952800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.94981 -47.95559 -40.91426 -38.54621 -37.97059 -36.82269 -36.28973 -35.61420 -34.05752 -31.07407 -29.84471 -27.83416 -27.44422 -23.85509 -22.96586 -21.97765 -21.53037 -20.33566 -19.25812 -18.57459 -18.37366 -18.32269 -18.04579 -17.36124 -16.97932 -16.79408 -16.67775 -16.54712 -16.18283 -15.67888 -15.34643 -15.06311 -14.89588 -14.61919 -14.38441 -14.30782 -13.74574 -13.66845 -13.56286 -13.41337 -13.11253 -13.05440 -12.91595 -12.86178 -12.83648 -12.41497 -12.20112 -12.10726 -11.89760 -11.55509 -11.22893 -10.85018 -10.66380 -10.51663 -10.34836 -9.86799 -8.17003 -6.31096 -0.56351 1.39006 1.41198 1.43804 1.52100 1.74577 2.12475 2.42136 2.73276 2.94521 3.10167 3.32528 3.40458 3.45485 3.50737 3.59679 3.92244 3.98419 4.25005 4.28273 4.32501 4.48260 4.54186 4.54433 4.60598 4.67144 4.87019 5.00886 5.12536 5.23992 5.48333 5.61578 5.74663 5.99625 6.25115 6.25778 6.74652 6.95662 7.41138 8.89949 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.014535 B = 0.003376 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.956609 B = 8291.520716 C = 9219.998922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.047 3.953 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.011 3.989 10 C -0.549 4.549 11 S 2.626 3.374 12 O -0.994 6.994 13 O -0.989 6.989 14 N -1.112 6.112 15 C 0.085 3.915 16 C 0.525 3.475 17 O -0.562 6.562 18 N -0.721 5.721 19 C 0.064 3.936 20 C 0.257 3.743 21 F -0.213 7.213 22 F -0.215 7.215 23 C -0.200 4.200 24 C -0.136 4.136 25 H 0.266 0.734 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.423 0.577 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.418 0.582 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.172 0.828 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 -8.754 -16.354 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.156 4.156 3 Si 0.758 3.242 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.009 3.991 10 C -0.683 4.683 11 S 2.724 3.276 12 O -0.984 6.984 13 O -0.978 6.978 14 N -0.874 5.874 15 C -0.045 4.045 16 C 0.310 3.690 17 O -0.441 6.441 18 N -0.375 5.375 19 C -0.060 4.060 20 C 0.203 3.797 21 F -0.195 7.195 22 F -0.197 7.197 23 C -0.237 4.237 24 C -0.175 4.175 25 H 0.076 0.924 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.261 0.739 29 H 0.148 0.852 30 H 0.133 0.867 31 H 0.255 0.745 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.189 0.811 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.120 -9.036 -16.368 20.383 hybrid contribution -0.303 1.232 0.284 1.300 sum -8.423 -7.804 -16.083 19.761 Atomic orbital electron populations 1.70002 1.06445 1.27822 1.48243 1.25447 0.95593 1.01266 0.93298 0.85939 0.79286 0.80435 0.78515 1.20123 1.19917 1.19755 1.20693 0.93147 0.90649 1.52824 0.93437 1.18416 1.00313 0.94237 0.86174 1.29868 1.16470 1.09861 1.12080 1.04382 0.76325 0.72696 0.74246 1.93474 1.66533 1.59888 1.78545 1.93483 1.76164 1.52749 1.75441 1.55376 1.61741 1.23633 1.46613 1.21369 0.96531 0.96019 0.90572 1.20483 0.77925 0.86011 0.84558 1.90687 1.51303 1.23072 1.79018 1.45674 1.47759 1.24111 1.19964 1.22746 1.01018 0.96335 0.85929 1.22622 0.78433 0.82173 0.96448 1.93008 1.48512 1.95580 1.82382 1.93012 1.85461 1.48390 1.92817 1.23256 0.98231 0.96989 1.05244 1.22519 0.93827 1.00761 1.00430 0.92449 0.84826 0.84448 0.73941 0.85187 0.86692 0.74511 0.87737 0.87233 0.81088 0.88345 0.90099 0.91549 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.91 12.98 21.45 0.28 -46.63 16 2 C 0.05 2.51 5.38 84.65 0.46 2.96 16 3 Si 0.93 42.92 29.55 68.60 2.03 44.94 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -28.93 8.18 25.60 0.21 -28.72 16 8 H 0.05 2.69 7.83 -2.91 -0.02 2.67 16 9 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 10 C -0.55 -21.17 5.92 71.98 0.43 -20.75 16 11 S 2.63 102.83 5.19 -56.49 -0.29 102.54 16 12 O -0.99 -43.47 18.08 -127.65 -2.31 -45.78 16 13 O -0.99 -46.20 17.18 -127.65 -2.19 -48.39 16 14 N -1.11 -32.95 5.82 -190.79 -1.11 -34.06 16 15 C 0.08 1.98 6.60 85.63 0.57 2.55 16 16 C 0.52 11.75 7.90 87.66 0.69 12.44 16 17 O -0.56 -16.12 15.73 -3.03 -0.05 -16.16 16 18 N -0.72 -11.21 5.42 -463.08 -2.51 -13.72 16 19 C 0.06 0.68 5.91 86.38 0.51 1.19 16 20 C 0.26 1.95 5.42 71.98 0.39 2.34 16 21 F -0.21 -2.69 17.20 44.97 0.77 -1.92 16 22 F -0.22 -2.89 17.20 44.97 0.77 -2.12 16 23 C -0.20 -8.44 9.96 30.62 0.30 -8.13 16 24 C -0.14 -5.91 9.49 30.62 0.29 -5.61 16 25 H 0.27 13.33 8.32 -92.71 -0.77 12.56 16 26 H 0.13 5.17 8.14 -2.39 -0.02 5.15 16 27 H 0.14 4.21 8.09 -2.39 -0.02 4.19 16 28 H 0.42 12.16 7.67 -96.75 -0.74 11.42 16 29 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.12 2.70 7.71 -2.39 -0.02 2.68 16 31 H 0.42 5.23 8.36 -92.71 -0.78 4.46 16 32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.17 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.08 3.45 8.14 -2.38 -0.02 3.44 16 37 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -75.67 352.98 -1.23 -76.91 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.40 Total: 25.69 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 3.77 Total: -41.29 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.34 Total: -94.41 kcal Atomic # 8 Polarization: -105.79 SS G_CDS: -4.55 Total: -110.34 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 1.55 Total: -4.03 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 102.83 SS G_CDS: -0.29 Total: 102.54 kcal Total: -75.67 -1.23 -76.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414267097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.527 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds