Wall clock time and date at job start Tue Mar 31 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00296 * 2 1 4 4 O 1.20820 * 119.99902 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99835 * 180.02562 * 3 2 1 6 6 N 1.46508 * 109.46883 * 179.97438 * 5 3 2 7 7 C 1.37093 * 120.00372 * 263.10398 * 6 5 3 8 8 H 1.07993 * 120.00453 * 142.05422 * 7 6 5 9 9 C 1.38958 * 119.99600 * 322.05983 * 7 6 5 10 10 N 1.31413 * 119.99979 * 158.26162 * 9 7 6 11 11 Si 1.86797 * 120.00109 * 338.25706 * 9 7 6 12 12 H 1.48507 * 109.47064 * 95.91730 * 11 9 7 13 13 H 1.48499 * 109.47226 * 215.91998 * 11 9 7 14 14 H 1.48498 * 109.47363 * 335.91955 * 11 9 7 15 15 C 1.34775 * 119.99736 * 83.10173 * 6 5 3 16 16 O 1.21299 * 120.00224 * 0.02562 * 15 6 5 17 17 C 1.50699 * 119.99946 * 180.02562 * 15 6 5 18 18 C 1.53004 * 109.47121 * 180.02562 * 17 15 6 19 19 C 1.50699 * 109.47121 * 179.97438 * 18 17 15 20 20 O 1.34235 * 126.52858 * 270.16255 * 19 18 17 21 21 C 1.34063 * 108.23917 * 180.22922 * 20 19 18 22 22 N 1.29918 * 109.26021 * 359.76625 * 21 20 19 23 23 C 1.36101 * 108.47966 * 359.97438 * 22 21 20 24 24 C 1.47268 * 126.46384 * 179.97438 * 23 22 21 25 25 O 1.21535 * 120.00399 * 179.75028 * 24 23 22 26 26 O 1.34784 * 119.99933 * 0.03199 * 24 23 22 27 27 H 1.09004 * 109.46943 * 299.99742 * 1 2 3 28 28 H 1.09000 * 109.47612 * 59.99638 * 1 2 3 29 29 H 1.09002 * 109.47903 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47539 * 60.00601 * 5 3 2 31 31 H 1.08999 * 109.47256 * 299.99799 * 5 3 2 32 32 H 0.96996 * 120.00324 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.47163 * 59.99673 * 17 15 6 34 34 H 1.09003 * 109.47386 * 299.99616 * 17 15 6 35 35 H 1.08996 * 109.47632 * 59.99638 * 18 17 15 36 36 H 1.09001 * 109.47128 * 299.99295 * 18 17 15 37 37 H 1.07997 * 125.36732 * 179.72718 * 21 20 19 38 38 H 0.96698 * 117.00169 * 179.72650 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.3124 3.2964 -1.1800 8 1 4.0339 4.3263 -1.3473 9 6 5.0058 2.5961 -2.1597 10 7 4.9583 2.9955 -3.4107 11 14 6.0055 1.0871 -1.6983 12 1 5.1930 -0.1344 -1.9287 13 1 7.2316 1.0311 -2.5342 14 1 6.3867 1.1650 -0.2652 15 6 4.0388 3.3659 1.1575 16 8 3.7467 2.8202 2.2007 17 6 4.4656 4.8111 1.1570 18 6 4.4453 5.3494 2.5890 19 6 4.8727 6.7946 2.5886 20 8 6.1266 7.2570 2.7140 21 6 6.0864 8.5963 2.6697 22 7 4.8556 8.9832 2.5165 23 6 4.0608 7.8799 2.4571 24 6 2.5978 7.8632 2.2896 25 8 2.0030 6.8042 2.2472 26 8 1.9191 9.0223 2.1774 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9563 0.7804 0.8891 32 1 5.4426 2.5070 -4.0945 33 1 3.7800 5.3922 0.5402 34 1 5.4748 4.8919 0.7532 35 1 5.1311 4.7683 3.2055 36 1 3.4362 5.2688 2.9933 37 1 6.9420 9.2503 2.7494 38 1 0.9606 8.9607 2.0649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598860989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:04 Heat of formation + Delta-G solvation = -168.966375 kcal Electronic energy + Delta-G solvation = -28124.235708 eV Core-core repulsion = 23741.984853 eV Total energy + Delta-G solvation = -4382.250855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.56094 -40.03858 -39.87506 -38.75857 -36.15242 -35.93902 -34.99495 -34.93292 -33.70173 -32.11581 -29.97407 -28.72454 -26.76161 -25.59321 -24.84761 -23.71847 -22.24433 -20.97686 -20.54918 -19.14228 -18.40062 -17.55395 -17.54246 -17.26141 -16.82896 -16.57560 -15.94146 -15.79419 -15.44222 -15.37496 -15.23798 -15.14754 -14.45692 -14.00568 -13.55374 -13.27814 -13.15726 -12.95983 -12.77137 -12.37161 -12.27515 -11.93469 -11.74176 -11.72050 -11.52098 -11.35168 -11.04712 -10.94273 -10.88038 -10.64570 -10.41771 -10.34173 -10.16430 -9.92175 -9.40999 -9.10724 -8.77550 -8.05621 -6.62171 -4.24671 0.91609 1.84390 2.40248 2.85421 2.92186 2.95215 2.99395 3.05511 3.13972 3.16670 3.68105 3.95818 4.00425 4.17728 4.55514 4.81372 5.09077 5.17883 5.34826 5.36505 5.41869 5.45545 5.47467 5.65338 5.69398 5.79240 5.81698 5.94792 5.99190 6.14361 6.34336 6.39887 6.54750 6.84823 7.07925 7.33331 7.89216 7.93162 8.10243 8.39003 8.76752 9.12369 9.45072 10.48111 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.004258 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.922416 B = 6574.572237 C = 7777.326030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.487 6.487 5 C 0.110 3.890 6 N -0.448 5.448 7 C -0.347 4.347 8 H 0.107 0.893 9 C 0.067 3.933 10 N -0.849 5.849 11 Si 0.862 3.138 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.502 3.498 16 O -0.590 6.590 17 C -0.108 4.108 18 C -0.036 4.036 19 C 0.082 3.918 20 O -0.191 6.191 21 C 0.170 3.830 22 N -0.449 5.449 23 C -0.072 4.072 24 C 0.568 3.432 25 O -0.490 6.490 26 O -0.500 6.500 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.278 0.722 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.257 0.743 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 4.374 8.602 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.372 6.372 5 C -0.015 4.015 6 N -0.169 5.169 7 C -0.473 4.473 8 H 0.125 0.875 9 C -0.142 4.142 10 N -0.483 5.483 11 Si 0.688 3.312 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.179 1.179 15 C 0.292 3.708 16 O -0.474 6.474 17 C -0.148 4.148 18 C -0.074 4.074 19 C 0.025 3.975 20 O -0.077 6.077 21 C -0.059 4.059 22 N -0.177 5.177 23 C -0.189 4.189 24 C 0.411 3.589 25 O -0.378 6.378 26 O -0.311 6.311 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.272 0.728 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.071 4.763 8.879 10.076 hybrid contribution -0.024 -1.131 -0.339 1.180 sum 0.047 3.633 8.540 9.281 Atomic orbital electron populations 1.23133 0.77538 1.02802 1.02282 1.86514 1.22681 1.34521 1.84974 1.24720 0.92827 0.81238 0.72335 1.90629 1.66549 1.36221 1.43773 1.21378 0.86943 0.88367 1.04862 1.43357 1.57945 1.08307 1.07303 1.19109 1.36659 1.00079 0.91488 0.87506 1.25386 0.96089 0.98090 0.94600 1.69770 1.38188 1.40543 0.99798 0.87141 0.80985 0.82645 0.80470 1.19558 1.20596 1.17855 1.20120 0.79379 0.88548 0.82728 1.90566 1.53930 1.71106 1.31796 1.21254 1.04420 0.94402 0.94732 1.20389 1.04556 0.82881 0.99551 1.24061 0.80395 0.97883 0.95165 1.84454 1.30101 1.24708 1.68474 1.28071 0.97452 0.79188 1.01157 1.70804 1.01445 1.29825 1.15606 1.20137 0.92821 0.89320 1.16612 1.19049 0.85698 0.81428 0.72762 1.91035 1.69040 1.31627 1.46052 1.84624 1.27096 1.34716 1.84671 0.92301 0.92222 0.88740 0.87368 0.87284 0.91181 0.88770 0.88481 0.88528 0.86026 0.72756 0.72754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.95 10.56 -39.26 -0.41 -7.37 16 3 C 0.45 9.98 7.98 36.00 0.29 10.27 16 4 O -0.49 -12.21 16.01 -18.75 -0.30 -12.51 16 5 C 0.11 2.43 4.49 -5.19 -0.02 2.40 16 6 N -0.45 -10.74 1.74 -116.09 -0.20 -10.94 16 7 C -0.35 -8.86 9.06 -14.93 -0.14 -8.99 16 8 H 0.11 2.91 7.24 -52.49 -0.38 2.53 16 9 C 0.07 1.70 5.27 -17.46 -0.09 1.60 16 10 N -0.85 -22.69 13.96 55.50 0.77 -21.92 16 11 Si 0.86 18.73 25.01 -169.99 -4.25 14.48 16 12 H -0.27 -5.57 6.71 56.52 0.38 -5.19 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.25 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.50 11.50 7.37 -10.99 -0.08 11.42 16 16 O -0.59 -14.20 15.68 5.54 0.09 -14.11 16 17 C -0.11 -2.09 4.38 -27.88 -0.12 -2.22 16 18 C -0.04 -0.60 4.49 -27.88 -0.13 -0.73 16 19 C 0.08 1.24 6.69 -35.05 -0.23 1.00 16 20 O -0.19 -2.45 10.72 6.53 0.07 -2.38 16 21 C 0.17 1.79 13.19 51.95 0.69 2.48 16 22 N -0.45 -6.31 11.36 -11.50 -0.13 -6.44 16 23 C -0.07 -1.11 7.04 -83.04 -0.58 -1.70 16 24 C 0.57 8.94 8.33 34.40 0.29 9.23 16 25 O -0.49 -8.95 15.60 -19.29 -0.30 -9.25 16 26 O -0.50 -6.32 13.44 -40.72 -0.55 -6.87 16 27 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 28 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.11 2.35 3.66 -51.93 -0.19 2.16 16 31 H 0.11 2.21 7.64 -51.93 -0.40 1.81 16 32 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.09 1.92 7.67 -51.93 -0.40 1.52 16 34 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 35 H 0.10 1.48 8.10 -51.93 -0.42 1.06 16 36 H 0.12 2.20 6.45 -51.93 -0.34 1.87 16 37 H 0.26 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.41 3.12 9.11 45.56 0.42 3.53 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -34.97 342.60 -2.10 -37.07 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -2.97 Total: 8.70 kcal Atomic # 6 Polarization: 25.44 SS G_CDS: 0.93 Total: 26.37 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.44 Total: -39.30 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.41 Total: -52.49 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.25 Total: 14.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.97 -2.10 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598860989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.898 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds