Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00261 * 2 1 4 4 H 1.48502 * 109.46716 * 270.00115 * 3 2 1 5 5 H 1.48500 * 109.47230 * 29.99484 * 3 2 1 6 6 H 1.48496 * 109.47160 * 149.99833 * 3 2 1 7 7 C 1.38800 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99845 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00114 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47330 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99879 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00079 * 179.97438 * 11 10 9 14 14 C 1.47586 * 134.49453 * 179.97438 * 13 11 10 15 15 C 1.53949 * 86.11766 * 155.36206 * 14 13 11 16 16 N 1.46495 * 113.73778 * 137.95777 * 15 14 13 17 17 C 1.34784 * 119.99801 * 156.92759 * 16 15 14 18 18 O 1.21278 * 119.99904 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99813 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.51470 * 34.63048 * 19 17 16 21 21 C 1.53006 * 117.43057 * 179.97438 * 19 17 16 22 22 H 1.09000 * 119.80899 * 355.31377 * 21 19 17 23 23 C 1.54476 * 118.06652 * 198.02788 * 21 19 17 24 24 O 1.44417 * 104.80699 * 273.17886 * 23 21 19 25 25 C 1.44423 * 105.27899 * 40.50531 * 24 23 21 26 26 C 1.52999 * 117.38678 * 249.32887 * 19 17 16 27 27 H 1.08999 * 119.80991 * 4.61861 * 26 19 17 28 28 C 1.47818 * 134.45919 * 359.87095 * 13 11 10 29 29 H 0.97000 * 119.99589 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47161 * 60.00270 * 10 9 7 31 31 H 1.09002 * 109.47355 * 299.99992 * 10 9 7 32 32 H 1.09004 * 113.76469 * 41.06228 * 14 13 11 33 33 H 1.08992 * 113.77085 * 269.66425 * 14 13 11 34 34 H 1.09003 * 113.73626 * 269.15760 * 15 14 13 35 35 H 0.97000 * 120.00436 * 336.92098 * 16 15 14 36 36 H 1.09000 * 110.36928 * 32.01183 * 23 21 19 37 37 H 1.09001 * 110.37052 * 154.34165 * 23 21 19 38 38 H 1.08998 * 110.37619 * 200.65555 * 25 24 23 39 39 H 1.09006 * 110.36783 * 78.31994 * 25 24 23 40 40 H 1.08999 * 113.76804 * 90.37341 * 28 13 11 41 41 H 1.09003 * 113.83367 * 318.91856 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3431 0.0008 14 6 2.6887 -7.8108 0.0016 15 6 4.0874 -7.8543 -0.6401 16 7 4.9527 -8.9045 -0.0977 17 6 5.9831 -9.3733 -0.8292 18 8 6.1935 -8.9261 -1.9367 19 6 6.8737 -10.4532 -0.2709 20 1 6.3785 -11.1893 0.3624 21 6 8.0253 -10.9424 -1.1516 22 1 8.1276 -10.5649 -2.1690 23 6 8.6767 -12.3004 -0.8083 24 8 9.6953 -11.9854 0.1658 25 6 9.0988 -10.9975 1.0343 26 6 8.3092 -10.0654 0.0890 27 1 8.6260 -9.0256 0.0086 28 6 4.3165 -6.4717 -0.0026 29 1 -0.4849 0.8401 -0.0004 30 1 3.1243 -3.7315 0.8905 31 1 3.1244 -3.7315 -0.8894 32 1 1.8938 -8.1689 -0.6527 33 1 2.6494 -8.2479 0.9993 34 1 4.0708 -7.8380 -1.7299 35 1 4.7843 -9.2624 0.7880 36 1 7.9382 -12.9778 -0.3795 37 1 9.1259 -12.7415 -1.6981 38 1 9.8724 -10.4379 1.5600 39 1 8.4250 -11.4751 1.7457 40 1 4.7560 -6.5148 0.9939 41 1 4.8190 -5.7624 -0.6602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688635061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = -39.951464 kcal Electronic energy + Delta-G solvation = -23959.474146 eV Core-core repulsion = 20161.403763 eV Total energy + Delta-G solvation = -3798.070383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33511 -40.44461 -39.11971 -37.51744 -35.08513 -34.20019 -32.45103 -30.41127 -29.29883 -28.10430 -26.54391 -26.31571 -25.45914 -23.30503 -21.57304 -21.23247 -20.78688 -19.18006 -18.15288 -17.77790 -17.16717 -16.72462 -16.39885 -16.12220 -15.71355 -15.58456 -15.05720 -14.93892 -14.82086 -14.37638 -14.00100 -13.59619 -13.49315 -13.24006 -12.98493 -12.92885 -12.68296 -12.48498 -12.36654 -12.14200 -11.85241 -11.58479 -11.07851 -11.04275 -10.97969 -10.90174 -10.78522 -10.35552 -10.24167 -9.85271 -9.63872 -9.43454 -9.08799 -8.73580 -8.27639 -6.53617 -6.23865 -3.95061 1.85677 2.31684 2.74597 2.96028 3.04043 3.21190 3.22681 3.28602 3.44312 3.50458 3.84642 3.92922 4.05242 4.17926 4.20712 4.29976 4.43731 4.46782 4.53836 4.75660 4.77791 4.83769 5.04710 5.10253 5.11321 5.11632 5.15872 5.28532 5.38539 5.40364 5.50975 5.52685 5.57123 5.83838 5.89184 6.02708 6.10532 6.12046 6.95350 7.57529 7.68014 7.70671 8.33096 8.44559 9.21398 10.83581 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.001931 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.308451 B =14494.277492 C =15296.073209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.560 3.440 12 O -0.511 6.511 13 N -0.649 5.649 14 C 0.103 3.897 15 C 0.111 3.889 16 N -0.714 5.714 17 C 0.547 3.453 18 O -0.529 6.529 19 C -0.151 4.151 20 H 0.126 0.874 21 C -0.159 4.159 22 H 0.137 0.863 23 C 0.073 3.927 24 O -0.370 6.370 25 C 0.074 3.926 26 C -0.168 4.168 27 H 0.130 0.870 28 C 0.091 3.909 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.405 0.595 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.584 -25.607 2.507 31.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.296 4.296 11 C 0.350 3.650 12 O -0.385 6.385 13 N -0.389 5.389 14 C -0.021 4.021 15 C 0.005 3.995 16 N -0.365 5.365 17 C 0.333 3.667 18 O -0.405 6.405 19 C -0.172 4.172 20 H 0.144 0.856 21 C -0.178 4.178 22 H 0.154 0.846 23 C -0.004 4.004 24 O -0.289 6.289 25 C -0.003 4.003 26 C -0.186 4.186 27 H 0.148 0.852 28 C -0.034 4.034 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.147 0.853 35 H 0.240 0.760 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.845 -25.364 1.713 29.956 hybrid contribution 1.572 1.331 0.520 2.125 sum 17.417 -24.033 2.233 29.764 Atomic orbital electron populations 1.70020 1.05950 1.27499 1.46772 1.25001 0.95051 0.99055 0.94489 0.86151 0.79386 0.81478 0.78392 1.20224 1.20722 1.19692 1.22851 0.94904 0.91532 1.59079 0.90897 1.85398 1.04808 0.96380 1.96735 1.23483 1.06591 0.94568 1.04948 1.20037 0.85365 0.85074 0.74533 1.90723 1.14781 1.84887 1.48076 1.49786 1.07358 1.05556 1.76224 1.23371 0.96404 0.81462 1.00859 1.23197 0.89247 0.86187 1.00836 1.45819 1.30295 1.40119 1.20313 1.19525 0.80420 0.81846 0.84935 1.90753 1.70938 1.59010 1.19764 1.22397 0.90558 1.00308 1.03955 0.85599 1.24245 0.99436 0.96267 0.97840 0.84555 1.22967 0.90477 0.93852 0.93091 1.89220 1.37259 1.59401 1.43035 1.22957 0.96938 0.88582 0.91829 1.24236 0.94422 1.01459 0.98523 0.85210 1.23696 0.82148 0.96244 1.01277 0.92147 0.89273 0.89172 0.89151 0.89658 0.85322 0.75955 0.91602 0.87885 0.87899 0.91531 0.89456 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.00 5.91 36.01 0.21 -2.79 16 11 C 0.56 10.77 8.07 -10.99 -0.09 10.68 16 12 O -0.51 -11.86 16.59 5.56 0.09 -11.77 16 13 N -0.65 -8.90 3.61 -178.29 -0.64 -9.55 16 14 C 0.10 0.99 8.59 -2.96 -0.03 0.97 16 15 C 0.11 0.95 4.40 -70.13 -0.31 0.64 16 16 N -0.71 -4.36 5.37 -55.33 -0.30 -4.66 16 17 C 0.55 4.40 7.61 -10.98 -0.08 4.31 16 18 O -0.53 -6.53 15.96 5.56 0.09 -6.44 16 19 C -0.15 -0.81 5.74 -91.77 -0.53 -1.34 16 20 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 21 C -0.16 -0.99 6.65 -89.02 -0.59 -1.59 16 22 H 0.14 1.03 7.81 -51.93 -0.41 0.62 16 23 C 0.07 0.38 7.44 37.93 0.28 0.67 16 24 O -0.37 -2.71 11.65 -35.23 -0.41 -3.12 16 25 C 0.07 0.36 7.44 37.93 0.28 0.64 16 26 C -0.17 -0.93 6.91 -89.03 -0.62 -1.55 16 27 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 28 C 0.09 0.89 8.43 -2.83 -0.02 0.87 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 31 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 34 H 0.13 1.32 7.51 -51.93 -0.39 0.93 16 35 H 0.41 1.28 8.71 -40.82 -0.36 0.93 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -37.66 367.85 -9.18 -46.85 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.77 Total: -2.50 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.29 Total: -1.49 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.21 Total: -39.64 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.23 Total: -21.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.66 -9.18 -46.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688635061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.894 kcal (2) G-P(sol) polarization free energy of solvation -37.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds