Wall clock time and date at job start Tue Mar 31 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47090 * 64.97793 * 6 5 4 8 8 C 1.52996 * 109.47048 * 184.97591 * 6 5 4 9 9 N 1.46500 * 109.46828 * 304.97508 * 6 5 4 10 10 C 1.34779 * 120.00015 * 179.97438 * 9 6 5 11 11 O 1.21589 * 119.99842 * 0.02562 * 10 9 6 12 12 N 1.34769 * 120.00207 * 180.02562 * 10 9 6 13 13 C 1.46504 * 119.99910 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46853 * 180.02562 * 13 12 10 15 15 O 1.21291 * 120.00379 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99508 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99644 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00037 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99997 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00078 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99930 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47239 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47044 * 119.99949 * 21 19 17 24 24 H 1.48505 * 109.46806 * 239.99468 * 21 19 17 25 25 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 26 26 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 29 29 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 30 30 H 1.08991 * 109.47396 * 59.99724 * 7 6 5 31 31 H 1.09001 * 109.46649 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.46943 * 300.00033 * 7 6 5 33 33 H 1.09008 * 109.47053 * 59.99956 * 8 6 5 34 34 H 1.09001 * 109.47080 * 179.97438 * 8 6 5 35 35 H 1.08999 * 109.47559 * 300.00083 * 8 6 5 36 36 H 0.96996 * 120.00206 * 0.02562 * 9 6 5 37 37 H 0.96996 * 120.00015 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.46939 * 299.99464 * 13 12 10 39 39 H 1.08992 * 109.47215 * 59.99979 * 13 12 10 40 40 H 0.97000 * 120.00684 * 359.97438 * 16 14 13 41 41 H 0.96993 * 119.99942 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 6 6.0364 -0.5175 1.3066 8 6 5.3588 -2.4493 -0.1255 9 7 6.0760 -0.3390 -1.1323 10 6 7.3733 -0.6440 -1.3339 11 8 7.9436 -1.4053 -0.5766 12 7 8.0384 -0.1050 -2.3748 13 6 9.4483 -0.4370 -2.5941 14 6 9.9521 0.2917 -3.8133 15 8 9.2066 1.0166 -4.4378 16 7 11.2311 0.1379 -4.2097 17 6 11.6892 0.8003 -5.3191 18 1 11.0254 1.4457 -5.8752 19 6 13.0076 0.6414 -5.7281 20 7 13.8155 -0.1436 -5.0512 21 14 13.6320 1.5446 -7.2393 22 1 12.5337 2.3592 -7.8182 23 1 14.7582 2.4330 -6.8549 24 1 14.1006 0.5590 -8.2465 25 16 2.5436 -1.4247 0.0079 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 0.8902 0.5135 28 1 -0.3633 -0.8898 0.5142 29 1 1.9024 2.0875 0.0004 30 1 5.4987 -0.9530 2.1486 31 1 7.0651 -0.8779 1.3063 32 1 6.0324 0.5689 1.3957 33 1 4.8720 -2.7393 -1.0567 34 1 6.3874 -2.8101 -0.1260 35 1 4.8210 -2.8850 0.7165 36 1 5.6212 0.2686 -1.7362 37 1 7.5835 0.5026 -2.9787 38 1 10.0321 -0.1357 -1.7243 39 1 9.5493 -1.5116 -2.7451 40 1 11.8274 -0.4415 -3.7101 41 1 14.7359 -0.2542 -5.3365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358317779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:56 Heat of formation + Delta-G solvation = -24.428761 kcal Electronic energy + Delta-G solvation = -24646.677957 eV Core-core repulsion = 20881.573440 eV Total energy + Delta-G solvation = -3765.104517 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58847 -39.68423 -38.28917 -36.43949 -34.36451 -33.65582 -32.83062 -31.54552 -31.23664 -27.58490 -27.37079 -27.32915 -24.65828 -24.43723 -22.19691 -20.47160 -19.67129 -19.26845 -18.57145 -18.12920 -17.81223 -16.40048 -15.65626 -15.43429 -15.29199 -15.12960 -14.63075 -14.60225 -14.20970 -14.14146 -13.85169 -13.73606 -13.44886 -13.36516 -13.10157 -12.91177 -12.42899 -12.21442 -12.15829 -11.87521 -11.84665 -11.61351 -11.51671 -11.30255 -11.12287 -10.39503 -10.30733 -10.02139 -9.73622 -9.62783 -9.54254 -9.26531 -9.04624 -8.60144 -8.60089 -8.07844 -6.49626 -3.91439 0.30065 0.94219 1.40332 2.43936 2.91901 3.11604 3.23737 3.30698 3.38946 3.66221 3.77552 4.10580 4.41391 4.51374 4.57505 4.72273 4.87533 4.92385 4.94107 5.03501 5.19201 5.31474 5.42512 5.44523 5.54178 5.62582 5.82554 5.83992 5.93674 6.03144 6.10273 6.12778 6.26695 6.52586 6.79892 7.11605 7.41415 7.48154 7.94842 8.25444 8.47488 8.80752 9.06914 9.41834 9.89842 10.67388 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.002141 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.932722 B =13072.100228 C =13665.259443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.230 4.230 3 C 0.032 3.968 4 N -0.456 5.456 5 C 0.034 3.966 6 C 0.279 3.721 7 C -0.156 4.156 8 C -0.175 4.175 9 N -0.735 5.735 10 C 0.712 3.288 11 O -0.593 6.593 12 N -0.723 5.723 13 C 0.129 3.871 14 C 0.429 3.571 15 O -0.597 6.597 16 N -0.550 5.550 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 S 0.149 5.851 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.175 0.825 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.400 0.600 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.854 -3.665 12.577 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.351 4.351 3 C -0.119 4.119 4 N -0.169 5.169 5 C -0.244 4.244 6 C 0.189 3.811 7 C -0.216 4.216 8 C -0.234 4.234 9 N -0.392 5.392 10 C 0.411 3.589 11 O -0.473 6.473 12 N -0.380 5.380 13 C 0.001 3.999 14 C 0.214 3.786 15 O -0.484 6.484 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.206 1.206 25 S 0.404 5.596 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.192 0.808 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.244 0.756 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.325 -4.595 12.802 27.001 hybrid contribution -0.033 1.654 -1.037 1.953 sum -23.357 -2.941 11.764 26.317 Atomic orbital electron populations 1.20238 0.86677 1.03451 1.03079 1.26180 1.01880 0.95753 1.11336 1.21737 0.86768 1.00200 1.03205 1.66198 1.17737 1.18565 1.14440 1.27081 1.00340 0.91784 1.05154 1.18438 0.81991 0.92764 0.87946 1.22243 1.03006 1.02416 0.93922 1.22422 1.06059 0.92846 1.02062 1.45066 1.10322 1.52340 1.31480 1.15719 0.80748 0.80818 0.81567 1.90831 1.67910 1.40416 1.48121 1.44784 1.12055 1.51095 1.30074 1.20783 0.81019 1.00125 0.97967 1.19789 0.83851 0.87120 0.87796 1.90497 1.56279 1.43286 1.58320 1.41795 1.08900 1.41600 1.26214 1.19773 0.95376 1.24394 1.03750 0.87663 1.25325 0.95879 0.97211 0.99395 1.69624 1.06815 1.37132 1.39934 0.85760 0.78798 0.79000 0.80538 1.19162 1.20632 1.20642 1.83986 0.97551 1.10470 1.67596 0.90388 0.90180 0.91046 0.80794 0.92070 0.88726 0.91732 0.91966 0.87858 0.91447 0.76600 0.75588 0.89953 0.89956 0.77018 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.42 36.01 0.38 0.02 16 2 C -0.23 -1.80 6.60 -35.92 -0.24 -2.03 16 3 C 0.03 0.29 11.25 -19.18 -0.22 0.08 16 4 N -0.46 -5.24 10.54 -11.86 -0.13 -5.37 16 5 C 0.03 0.37 5.87 -13.45 -0.08 0.29 16 6 C 0.28 3.28 1.02 -132.97 -0.14 3.14 16 7 C -0.16 -1.88 8.38 37.16 0.31 -1.57 16 8 C -0.18 -1.88 7.48 37.16 0.28 -1.61 16 9 N -0.74 -9.72 5.10 -53.50 -0.27 -9.99 16 10 C 0.71 11.43 7.98 -86.92 -0.69 10.73 16 11 O -0.59 -10.64 12.55 5.29 0.07 -10.58 16 12 N -0.72 -12.30 5.53 -66.42 -0.37 -12.67 16 13 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 14 C 0.43 9.90 7.85 -10.98 -0.09 9.81 16 15 O -0.60 -15.44 15.24 5.55 0.08 -15.36 16 16 N -0.55 -13.70 5.29 -10.96 -0.06 -13.76 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 18 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 20 N -0.89 -23.98 13.05 55.50 0.72 -23.26 16 21 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 S 0.15 1.24 21.59 -107.50 -2.32 -1.08 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.31 6.16 -51.93 -0.32 0.99 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.64 8.03 -51.92 -0.42 0.22 16 34 H 0.10 1.34 6.16 -51.93 -0.32 1.02 16 35 H 0.07 0.58 7.81 -51.93 -0.41 0.18 16 36 H 0.40 4.96 8.48 -40.82 -0.35 4.61 16 37 H 0.41 6.92 7.45 -40.82 -0.30 6.61 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -31.60 360.47 -7.94 -39.55 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -5.33 Total: 18.08 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -0.76 Total: 13.36 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.10 Total: -65.05 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: 0.15 Total: -25.93 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.32 Total: -1.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.60 -7.94 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358317779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.120 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds