Wall clock time and date at job start Tue Mar 31 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47135 * 2 1 4 4 C 1.46502 * 119.99649 * 274.99969 * 3 2 1 5 5 C 1.50694 * 109.46990 * 274.99819 * 4 3 2 6 6 O 1.21279 * 120.00256 * 0.02562 * 5 4 3 7 7 N 1.34785 * 119.99854 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99921 * 180.02562 * 7 5 4 9 9 S 1.65599 * 120.00089 * 94.99924 * 3 2 1 10 10 O 1.42099 * 106.39938 * 336.46358 * 9 3 2 11 11 O 1.42092 * 106.40136 * 203.53886 * 9 3 2 12 12 C 1.76199 * 107.21588 * 89.99690 * 9 3 2 13 13 C 1.38649 * 119.87924 * 270.25539 * 12 9 3 14 14 C 1.38617 * 120.50384 * 180.30415 * 13 12 9 15 15 C 1.37641 * 120.24556 * 359.44340 * 14 13 12 16 16 C 1.40700 * 119.74456 * 0.27362 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46564 * 60.00381 * 21 19 17 23 23 H 1.48498 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46916 * 300.00498 * 21 19 17 25 25 C 1.37604 * 119.87027 * 90.00133 * 12 9 3 26 26 H 1.09002 * 109.46621 * 59.99930 * 1 2 3 27 27 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46883 * 300.00018 * 1 2 3 29 29 H 1.09001 * 109.46771 * 240.00071 * 2 1 3 30 30 H 1.09000 * 109.47286 * 120.00384 * 2 1 3 31 31 H 1.09003 * 109.47319 * 35.00494 * 4 3 2 32 32 H 1.09007 * 109.46541 * 155.00158 * 4 3 2 33 33 H 0.96995 * 119.99855 * 359.97438 * 7 5 4 34 34 H 1.08994 * 109.47263 * 59.99931 * 8 7 5 35 35 H 1.08996 * 109.46669 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46527 * 299.99434 * 8 7 5 37 37 H 1.08005 * 119.75337 * 0.03997 * 13 12 9 38 38 H 1.07992 * 119.88323 * 179.71839 * 14 13 12 39 39 H 1.07998 * 120.13267 * 180.25377 * 15 14 13 40 40 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 41 41 H 1.07994 * 120.13007 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7887 -1.8823 6 8 4.2554 1.0277 -1.3226 7 7 3.8449 2.3484 -3.0574 8 6 5.1440 2.0370 -3.6588 9 16 2.4122 2.1202 1.4287 10 8 1.6869 1.4415 2.4447 11 8 2.3058 3.5185 1.1998 12 6 4.1170 1.7940 1.7320 13 6 4.4878 0.6643 2.4451 14 6 5.8248 0.3984 2.6966 15 6 6.8007 1.2494 2.2298 16 6 6.4364 2.3957 1.4998 17 6 7.4301 3.2775 1.0157 18 1 7.1854 4.3105 0.8176 19 6 8.7308 2.8115 0.7935 20 7 8.9569 1.5270 0.6905 21 14 10.1444 4.0236 0.6436 22 1 10.2551 4.8122 1.8971 23 1 11.4098 3.2820 0.4113 24 1 9.8917 4.9401 -0.4972 25 6 5.0756 2.6587 1.2556 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1803 -1.0756 33 1 3.2365 2.9568 -3.5052 34 1 5.2095 0.9656 -3.8476 35 1 5.2484 2.5790 -4.5987 36 1 5.9406 2.3354 -2.9774 37 1 3.7290 -0.0115 2.8112 38 1 6.1021 -0.4821 3.2570 39 1 7.8420 1.0382 2.4232 40 1 9.8585 1.2041 0.5361 41 1 4.7847 3.5361 0.6971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795077621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:37 Heat of formation + Delta-G solvation = -85.010548 kcal Electronic energy + Delta-G solvation = -26962.060868 eV Core-core repulsion = 23162.036576 eV Total energy + Delta-G solvation = -3800.024292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.40007 -37.47371 -36.75865 -36.21754 -35.28778 -34.24561 -33.71662 -30.94437 -29.93789 -29.64261 -27.97673 -25.39762 -25.27363 -22.61736 -21.73993 -20.85242 -20.40848 -18.67302 -17.87286 -17.35735 -16.93834 -16.32801 -15.77938 -15.22266 -15.09816 -14.95468 -14.58934 -14.34553 -13.76996 -13.70066 -13.35604 -13.24855 -13.01966 -12.66020 -12.47162 -12.19450 -12.03219 -11.96134 -11.78288 -11.59946 -11.53833 -11.34126 -11.28755 -11.14665 -10.91690 -10.79991 -10.73682 -10.54390 -10.04063 -9.63860 -9.43880 -9.23675 -8.87200 -8.73286 -7.84294 -7.53948 -6.79980 -4.40145 1.00765 2.35953 2.77264 2.94531 3.03561 3.06148 3.15288 3.24155 3.61958 3.89761 4.30265 4.52339 4.81885 4.85530 4.97627 5.23769 5.30691 5.37827 5.42463 5.47056 5.56454 5.71272 5.75926 5.87333 6.10816 6.15878 6.21171 6.28671 6.30063 6.60254 6.64840 6.75655 6.90330 7.04024 7.16410 7.37663 7.53216 7.66829 7.87394 7.92874 8.08520 8.52933 8.53141 8.79988 8.86368 10.15405 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.005282 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.645110 B = 5299.356534 C = 6360.993553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.126 3.874 3 N -0.980 5.980 4 C 0.101 3.899 5 C 0.475 3.525 6 O -0.491 6.491 7 N -0.740 5.740 8 C 0.090 3.910 9 S 2.684 3.316 10 O -0.969 6.969 11 O -0.974 6.974 12 C -0.619 4.619 13 C -0.142 4.142 14 C -0.121 4.121 15 C -0.118 4.118 16 C 0.096 3.904 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.794 5.794 21 Si 0.908 3.092 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.107 4.107 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.397 0.603 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.281 0.719 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -0.808 -8.681 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.000 4.000 3 N -0.814 5.814 4 C -0.029 4.029 5 C 0.258 3.742 6 O -0.362 6.362 7 N -0.394 5.394 8 C -0.055 4.055 9 S 2.782 3.218 10 O -0.960 6.960 11 O -0.965 6.965 12 C -0.712 4.712 13 C -0.163 4.163 14 C -0.140 4.140 15 C -0.137 4.137 16 C 0.093 3.907 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.141 4.141 20 N -0.419 5.419 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.128 4.128 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.230 0.770 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.217 -1.098 -7.800 12.901 hybrid contribution 1.322 0.394 -0.711 1.552 sum -8.895 -0.704 -8.511 12.331 Atomic orbital electron populations 1.22244 0.96154 1.02258 1.02439 1.21172 0.93661 0.81288 1.03832 1.57338 1.79785 1.23758 1.20533 1.21154 0.95395 0.99150 0.87234 1.21427 0.89732 0.81789 0.81240 1.90886 1.51745 1.33616 1.59993 1.45733 1.20220 1.49869 1.23600 1.21494 0.85334 1.00937 0.97699 1.01879 0.75145 0.72814 0.71963 1.93506 1.71924 1.75510 1.55050 1.93492 1.87628 1.30266 1.85092 1.29554 1.20981 1.06377 1.14285 1.19981 0.96037 0.96543 1.03719 1.20751 0.93184 0.98952 1.01140 1.21579 0.98755 0.96105 0.97304 1.17595 0.91146 0.92301 0.89655 1.19502 0.93337 0.97334 1.39094 0.90353 1.25883 1.00176 0.95568 0.92488 1.69811 1.23168 1.14484 1.34440 0.86371 0.79440 0.80982 0.79955 1.18767 1.20326 1.19004 1.20559 0.93084 0.98110 1.01079 0.92585 0.91542 0.91792 0.90528 0.89709 0.87505 0.86302 0.77034 0.92625 0.91275 0.91488 0.87996 0.88644 0.85953 0.90776 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.24 37.16 0.38 -1.49 16 2 C 0.13 1.71 6.05 -4.04 -0.02 1.69 16 3 N -0.98 -15.45 2.27 -115.65 -0.26 -15.72 16 4 C 0.10 1.30 6.16 -5.20 -0.03 1.27 16 5 C 0.48 7.44 7.89 -10.98 -0.09 7.36 16 6 O -0.49 -10.27 15.77 5.56 0.09 -10.18 16 7 N -0.74 -8.97 5.71 -67.08 -0.38 -9.35 16 8 C 0.09 1.13 10.70 59.85 0.64 1.77 16 9 S 2.68 53.44 5.64 -107.50 -0.61 52.83 16 10 O -0.97 -20.25 16.24 -57.17 -0.93 -21.18 16 11 O -0.97 -20.60 15.82 -57.17 -0.90 -21.50 16 12 C -0.62 -14.55 5.62 -39.66 -0.22 -14.77 16 13 C -0.14 -3.32 9.53 -39.29 -0.37 -3.70 16 14 C -0.12 -2.92 10.02 -39.66 -0.40 -3.32 16 15 C -0.12 -3.12 8.70 -38.87 -0.34 -3.45 16 16 C 0.10 2.63 5.58 -106.82 -0.60 2.03 16 17 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 18 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 19 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 20 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 21 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.11 -2.72 8.96 -38.87 -0.35 -3.07 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 30 H 0.08 1.24 7.61 -51.93 -0.40 0.84 16 31 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 32 H 0.12 1.47 6.91 -51.92 -0.36 1.11 16 33 H 0.40 3.16 8.83 -40.82 -0.36 2.80 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 2.16 7.61 -52.48 -0.40 1.76 16 38 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.12 3.28 6.15 -52.49 -0.32 2.96 16 40 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 41 H 0.10 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -34.39 361.02 -9.40 -43.78 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.59 Total: 8.80 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -1.83 Total: -26.59 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.04 Total: -45.00 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -1.75 Total: -52.87 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 16 Polarization: 53.44 SS G_CDS: -0.61 Total: 52.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.39 -9.40 -43.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795077621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.226 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds