Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99851 * 2 1 4 4 C 1.50703 * 109.46828 * 179.97438 * 3 2 1 5 5 C 1.33819 * 122.44868 * 269.97347 * 4 3 2 6 6 S 1.70619 * 110.95324 * 179.78371 * 5 4 3 7 7 C 1.75829 * 91.56403 * 0.30994 * 6 5 4 8 8 C 1.46581 * 125.45871 * 179.97438 * 7 6 5 9 9 O 1.21701 * 120.00069 * 179.69127 * 8 7 6 10 10 N 1.34780 * 120.00130 * 359.69567 * 8 7 6 11 11 C 1.46497 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.91612 * 37.44492 * 11 10 8 13 13 C 1.54906 * 111.00207 * 273.53995 * 11 10 8 14 14 N 1.47427 * 104.83302 * 204.91733 * 13 11 10 15 15 C 1.36934 * 125.64760 * 204.09847 * 14 13 11 16 16 H 1.07997 * 120.00239 * 351.28229 * 15 14 13 17 17 C 1.38817 * 119.99822 * 171.29239 * 15 14 13 18 18 N 1.31620 * 120.00015 * 164.58539 * 17 15 14 19 19 Si 1.86799 * 119.99835 * 344.30666 * 17 15 14 20 20 H 1.48494 * 109.47004 * 185.79088 * 19 17 15 21 21 H 1.48506 * 109.47205 * 305.78771 * 19 17 15 22 22 H 1.48497 * 109.47199 * 65.79030 * 19 17 15 23 23 C 1.47018 * 108.70103 * 24.35915 * 14 13 11 24 24 C 1.54334 * 107.26557 * 358.58635 * 23 14 13 25 25 H 1.08997 * 110.51440 * 96.45485 * 24 23 14 26 26 O 1.42900 * 110.84784 * 219.67305 * 24 23 14 27 27 C 1.36653 * 109.08511 * 359.69462 * 7 6 5 28 28 H 1.08992 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47040 * 300.00536 * 1 2 3 30 30 H 1.09004 * 109.46377 * 60.00051 * 1 2 3 31 31 H 1.09001 * 109.47477 * 60.00024 * 3 2 1 32 32 H 1.09000 * 109.47476 * 299.99253 * 3 2 1 33 33 H 1.07996 * 124.52288 * 0.02623 * 5 4 3 34 34 H 0.97000 * 119.99698 * 359.97438 * 10 8 7 35 35 H 1.09006 * 110.36654 * 86.08043 * 13 11 10 36 36 H 1.08995 * 110.37324 * 323.76159 * 13 11 10 37 37 H 0.97003 * 119.99843 * 355.00480 * 18 17 15 38 38 H 1.09003 * 109.88444 * 118.12847 * 23 14 13 39 39 H 1.09007 * 109.88372 * 239.29491 * 23 14 13 40 40 H 0.96699 * 114.00067 * 293.69057 * 26 24 23 41 41 H 1.07996 * 123.35471 * 180.20699 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2279 1.1304 1.1302 6 16 5.8943 0.9921 0.7909 7 6 5.5932 1.0219 -0.9412 8 6 6.6198 0.9395 -1.9842 9 8 6.2982 0.9638 -3.1578 10 7 7.9198 0.8368 -1.6438 11 6 8.9457 0.7539 -2.6862 12 1 8.6937 1.3936 -3.5319 13 6 9.1569 -0.7115 -3.1420 14 7 10.5324 -0.7476 -3.6712 15 6 11.0131 -1.6486 -4.5835 16 1 10.4124 -2.4987 -4.8711 17 6 12.2728 -1.4693 -5.1385 18 7 12.8619 -2.4634 -5.7687 19 14 13.1285 0.1852 -4.9979 20 1 14.3870 0.1601 -5.7857 21 1 12.2367 1.2500 -5.5235 22 1 13.4421 0.4608 -3.5728 23 6 11.3043 0.3400 -3.0524 24 6 10.3454 1.1082 -2.1184 25 1 10.4464 0.7543 -1.0924 26 8 10.5804 2.5157 -2.1945 27 6 4.2484 1.1279 -1.1592 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6888 1.8464 -0.8900 33 1 3.8064 1.1640 2.1239 34 1 8.1761 0.8178 -0.7084 35 1 8.4429 -0.9725 -3.9233 36 1 9.0583 -1.3903 -2.2949 37 1 12.4490 -3.3411 -5.7830 38 1 12.1326 -0.0739 -2.4773 39 1 11.6840 1.0104 -3.8235 40 1 11.4422 2.7897 -1.8520 41 1 3.8074 1.1627 -2.1444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077314421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = -50.280453 kcal Electronic energy + Delta-G solvation = -24943.950179 eV Core-core repulsion = 21145.431897 eV Total energy + Delta-G solvation = -3798.518282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02091 -39.09878 -38.18674 -37.09323 -35.40980 -34.27510 -32.08406 -30.91261 -28.81452 -28.15172 -27.81182 -26.17184 -24.84120 -23.49006 -21.28555 -20.95643 -20.26687 -19.32111 -18.71207 -17.59655 -17.26483 -16.81712 -16.69461 -16.17733 -15.79172 -15.57445 -15.10362 -14.81101 -14.61722 -13.90632 -13.67749 -13.60570 -13.36449 -13.34205 -13.07222 -12.74565 -12.47089 -12.39980 -12.31631 -11.95043 -11.75892 -11.72326 -11.23516 -11.20818 -10.66705 -10.28427 -10.11562 -10.08522 -9.95737 -9.36024 -9.19838 -9.05274 -8.95147 -8.83427 -8.72212 -7.11531 -6.34134 -3.25949 0.25293 1.17009 1.54291 1.95796 3.03261 3.14352 3.33818 3.50186 3.66513 3.69186 4.21684 4.49664 4.55822 4.59142 4.74034 4.79527 4.84294 4.95521 4.96992 5.00361 5.14751 5.20468 5.24451 5.26851 5.29113 5.43741 5.57897 5.75336 5.80744 5.94185 6.02261 6.24765 6.31502 6.37978 6.52358 6.66624 6.72289 7.44377 7.57610 7.73492 8.16153 8.30050 8.99984 9.49544 10.14503 11.16427 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.002642 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.599985 B =10594.416690 C =11197.485604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.123 3.877 4 C -0.121 4.121 5 C -0.213 4.213 6 S 0.213 5.787 7 C -0.259 4.259 8 C 0.590 3.410 9 O -0.521 6.521 10 N -0.711 5.711 11 C 0.139 3.861 12 H 0.109 0.891 13 C 0.130 3.870 14 N -0.606 5.606 15 C -0.323 4.323 16 H 0.082 0.918 17 C -0.021 4.021 18 N -0.925 5.925 19 Si 1.070 2.930 20 H -0.300 1.300 21 H -0.294 1.294 22 H -0.289 1.289 23 C 0.083 3.917 24 C 0.086 3.914 25 H 0.070 0.930 26 O -0.558 6.558 27 C -0.041 4.041 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.170 0.830 34 H 0.395 0.605 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.379 0.621 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.671 10.547 19.307 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.044 3.956 4 C -0.135 4.135 5 C -0.351 4.351 6 S 0.481 5.519 7 C -0.379 4.379 8 C 0.376 3.624 9 O -0.398 6.398 10 N -0.362 5.362 11 C 0.034 3.966 12 H 0.127 0.873 13 C 0.003 3.997 14 N -0.335 5.335 15 C -0.449 4.449 16 H 0.100 0.900 17 C -0.221 4.221 18 N -0.566 5.566 19 Si 0.905 3.095 20 H -0.228 1.228 21 H -0.223 1.223 22 H -0.217 1.217 23 C -0.042 4.042 24 C 0.026 3.974 25 H 0.088 0.912 26 O -0.363 6.363 27 C -0.074 4.074 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.188 0.812 34 H 0.229 0.771 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.226 0.774 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.655 11.033 18.568 27.897 hybrid contribution -2.334 -0.556 0.440 2.440 sum -19.990 10.477 19.008 29.507 Atomic orbital electron populations 1.22771 0.80817 1.03010 1.00022 1.87993 1.19690 1.27340 1.95405 1.21002 0.88268 0.85169 1.01121 1.18411 0.95881 1.07245 0.91957 1.25192 0.98889 1.07675 1.03339 1.83001 1.03843 1.66637 0.98397 1.24621 0.98121 1.18076 0.97111 1.16877 0.81530 0.76596 0.87413 1.90866 1.81229 1.49721 1.18033 1.45739 1.05745 1.74863 1.09845 1.22340 0.84536 0.99211 0.90549 0.87296 1.21932 0.88329 0.91819 0.97641 1.44620 1.05203 1.34293 1.49366 1.20198 1.02146 1.03032 1.19566 0.90010 1.25853 0.94238 1.05148 0.96860 1.70889 1.39324 1.01512 1.44899 0.83839 0.75263 0.75235 0.75207 1.22826 1.22313 1.21728 1.22699 0.95041 0.91310 0.95162 1.23063 0.94851 0.81325 0.98138 0.91183 1.86525 1.40582 1.22019 1.87164 1.20609 0.90934 0.95878 0.99950 0.89442 0.94054 0.93857 0.92270 0.91948 0.81243 0.77105 0.92232 0.95071 0.92736 0.92980 0.93840 0.77395 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.74 10.69 -35.23 -0.38 -4.12 16 3 C 0.12 0.98 6.18 36.01 0.22 1.21 16 4 C -0.12 -1.18 5.41 -106.45 -0.58 -1.76 16 5 C -0.21 -1.77 10.67 29.18 0.31 -1.46 16 6 S 0.21 1.88 22.16 -107.50 -2.38 -0.50 16 7 C -0.26 -3.26 6.45 -36.79 -0.24 -3.50 16 8 C 0.59 9.38 7.78 -12.89 -0.10 9.28 16 9 O -0.52 -10.30 16.59 5.19 0.09 -10.22 16 10 N -0.71 -10.50 5.23 -53.07 -0.28 -10.78 16 11 C 0.14 2.51 3.04 -65.79 -0.20 2.31 16 12 H 0.11 2.24 7.73 -51.93 -0.40 1.84 16 13 C 0.13 2.75 6.92 -2.53 -0.02 2.73 16 14 N -0.61 -15.07 3.33 -170.06 -0.57 -15.64 16 15 C -0.32 -9.38 10.56 -15.06 -0.16 -9.54 16 16 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 17 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 18 N -0.93 -29.26 13.70 55.49 0.76 -28.50 16 19 Si 1.07 26.87 24.54 -169.99 -4.17 22.70 16 20 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.29 -7.30 6.83 56.52 0.39 -6.91 16 22 H -0.29 -6.43 5.44 56.52 0.31 -6.12 16 23 C 0.08 1.79 4.41 -3.06 -0.01 1.77 16 24 C 0.09 1.43 3.94 -24.89 -0.10 1.33 16 25 H 0.07 0.96 8.00 -51.93 -0.42 0.54 16 26 O -0.56 -8.45 13.39 -35.23 -0.47 -8.92 16 27 C -0.04 -0.49 9.80 -40.43 -0.40 -0.88 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.39 4.61 7.63 -40.82 -0.31 4.30 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 38 H 0.05 1.12 6.82 -51.93 -0.35 0.76 16 39 H 0.04 1.00 3.64 -51.93 -0.19 0.81 16 40 H 0.38 3.95 9.12 45.56 0.42 4.37 16 41 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -36.61 353.48 -7.06 -43.68 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.74 Total: 4.91 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.25 Total: 2.07 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.08 Total: -54.92 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.76 Total: -23.25 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -4.17 Total: 22.70 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.38 Total: -0.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.61 -7.06 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077314421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.605 kcal (2) G-P(sol) polarization free energy of solvation -36.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds