Wall clock time and date at job start Tue Mar 31 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99851 * 2 1 4 4 C 1.50703 * 109.46828 * 179.97438 * 3 2 1 5 5 C 1.33819 * 122.44868 * 269.97347 * 4 3 2 6 6 S 1.70619 * 110.95324 * 179.78371 * 5 4 3 7 7 C 1.75829 * 91.56403 * 0.30994 * 6 5 4 8 8 C 1.46581 * 125.45871 * 179.97438 * 7 6 5 9 9 O 1.21701 * 120.00069 * 179.69127 * 8 7 6 10 10 N 1.34780 * 120.00130 * 359.69567 * 8 7 6 11 11 C 1.46497 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.91612 * 37.44492 * 11 10 8 13 13 C 1.54906 * 111.00207 * 273.53995 * 11 10 8 14 14 N 1.47427 * 104.83302 * 204.91733 * 13 11 10 15 15 C 1.36934 * 125.64760 * 204.09847 * 14 13 11 16 16 H 1.07997 * 120.00239 * 351.28229 * 15 14 13 17 17 C 1.38817 * 119.99822 * 171.29239 * 15 14 13 18 18 N 1.31620 * 120.00015 * 164.58539 * 17 15 14 19 19 Si 1.86799 * 119.99835 * 344.30666 * 17 15 14 20 20 H 1.48494 * 109.47004 * 185.79088 * 19 17 15 21 21 H 1.48506 * 109.47205 * 305.78771 * 19 17 15 22 22 H 1.48497 * 109.47199 * 65.79030 * 19 17 15 23 23 C 1.47018 * 108.70103 * 24.35915 * 14 13 11 24 24 C 1.54334 * 107.26557 * 358.58635 * 23 14 13 25 25 H 1.08997 * 110.51440 * 96.45485 * 24 23 14 26 26 O 1.42900 * 110.84784 * 219.67305 * 24 23 14 27 27 C 1.36653 * 109.08511 * 359.69462 * 7 6 5 28 28 H 1.08992 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47040 * 300.00536 * 1 2 3 30 30 H 1.09004 * 109.46377 * 60.00051 * 1 2 3 31 31 H 1.09001 * 109.47477 * 60.00024 * 3 2 1 32 32 H 1.09000 * 109.47476 * 299.99253 * 3 2 1 33 33 H 1.07996 * 124.52288 * 0.02623 * 5 4 3 34 34 H 0.97000 * 119.99698 * 359.97438 * 10 8 7 35 35 H 1.09006 * 110.36654 * 86.08043 * 13 11 10 36 36 H 1.08995 * 110.37324 * 323.76159 * 13 11 10 37 37 H 0.97003 * 119.99843 * 355.00480 * 18 17 15 38 38 H 1.09003 * 109.88444 * 118.12847 * 23 14 13 39 39 H 1.09007 * 109.88372 * 239.29491 * 23 14 13 40 40 H 0.96699 * 114.00067 * 293.69057 * 26 24 23 41 41 H 1.07996 * 123.35471 * 180.20699 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2279 1.1304 1.1302 6 16 5.8943 0.9921 0.7909 7 6 5.5932 1.0219 -0.9412 8 6 6.6198 0.9395 -1.9842 9 8 6.2982 0.9638 -3.1578 10 7 7.9198 0.8368 -1.6438 11 6 8.9457 0.7539 -2.6862 12 1 8.6937 1.3936 -3.5319 13 6 9.1569 -0.7115 -3.1420 14 7 10.5324 -0.7476 -3.6712 15 6 11.0131 -1.6486 -4.5835 16 1 10.4124 -2.4987 -4.8711 17 6 12.2728 -1.4693 -5.1385 18 7 12.8619 -2.4634 -5.7687 19 14 13.1285 0.1852 -4.9979 20 1 14.3870 0.1601 -5.7857 21 1 12.2367 1.2500 -5.5235 22 1 13.4421 0.4608 -3.5728 23 6 11.3043 0.3400 -3.0524 24 6 10.3454 1.1082 -2.1184 25 1 10.4464 0.7543 -1.0924 26 8 10.5804 2.5157 -2.1945 27 6 4.2484 1.1279 -1.1592 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6888 1.8464 -0.8900 33 1 3.8064 1.1640 2.1239 34 1 8.1761 0.8178 -0.7084 35 1 8.4429 -0.9725 -3.9233 36 1 9.0583 -1.3903 -2.2949 37 1 12.4490 -3.3411 -5.7830 38 1 12.1326 -0.0739 -2.4773 39 1 11.6840 1.0104 -3.8235 40 1 11.4422 2.7897 -1.8520 41 1 3.8074 1.1627 -2.1444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077314421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:39 Heat of formation + Delta-G solvation = -82.099760 kcal Electronic energy + Delta-G solvation = -24945.329968 eV Core-core repulsion = 21145.431897 eV Total energy + Delta-G solvation = -3799.898070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29411 -40.04284 -39.40018 -37.82821 -36.87809 -35.77659 -34.11518 -31.90895 -30.36447 -29.49802 -28.70298 -26.77544 -26.27249 -24.88559 -22.93752 -22.19480 -21.78462 -20.15875 -19.88811 -19.46839 -18.57773 -17.83226 -17.37385 -17.33687 -16.78275 -16.53674 -16.25840 -16.16046 -15.91299 -15.48793 -15.37869 -14.81234 -14.50920 -14.43569 -14.10620 -14.00682 -13.94161 -13.56370 -13.45188 -13.10658 -13.06943 -12.91691 -12.46218 -12.29901 -11.95738 -11.80620 -11.66878 -11.40302 -11.31041 -11.09025 -10.64896 -10.61044 -10.45006 -9.92176 -9.53649 -9.20078 -8.71212 -5.54632 -0.58727 0.40130 0.79533 1.13581 1.34235 1.50837 1.70636 1.81840 2.00840 2.51775 2.86211 3.10666 3.12545 3.22343 3.49427 3.65730 3.76935 3.92528 3.94482 4.04170 4.17935 4.22360 4.32350 4.40037 4.49760 4.56516 4.60076 4.63736 4.69885 4.75128 4.81881 4.87838 4.88546 5.16282 5.20403 5.27902 5.45306 6.01958 6.20926 6.29144 6.73883 6.81347 6.98332 7.32069 7.96962 8.81278 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.002642 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.599985 B =10594.416690 C =11197.485604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.121 3.879 4 C -0.140 4.140 5 C -0.196 4.196 6 S 0.277 5.723 7 C -0.302 4.302 8 C 0.589 3.411 9 O -0.574 6.574 10 N -0.697 5.697 11 C 0.149 3.851 12 H 0.079 0.921 13 C 0.130 3.870 14 N -0.627 5.627 15 C -0.317 4.317 16 H 0.045 0.955 17 C -0.078 4.078 18 N -0.959 5.959 19 Si 1.111 2.889 20 H -0.310 1.310 21 H -0.293 1.293 22 H -0.235 1.235 23 C 0.071 3.929 24 C 0.110 3.890 25 H 0.116 0.884 26 O -0.563 6.563 27 C -0.044 4.044 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.204 0.796 34 H 0.414 0.586 35 H 0.028 0.972 36 H 0.048 0.952 37 H 0.248 0.752 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.403 0.597 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.133 12.910 23.784 33.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.043 3.957 4 C -0.153 4.153 5 C -0.334 4.334 6 S 0.546 5.454 7 C -0.422 4.422 8 C 0.377 3.623 9 O -0.455 6.455 10 N -0.348 5.348 11 C 0.043 3.957 12 H 0.097 0.903 13 C 0.003 3.997 14 N -0.356 5.356 15 C -0.446 4.446 16 H 0.063 0.937 17 C -0.271 4.271 18 N -0.602 5.602 19 Si 0.938 3.062 20 H -0.240 1.240 21 H -0.222 1.222 22 H -0.159 1.159 23 C -0.054 4.054 24 C 0.049 3.951 25 H 0.134 0.866 26 O -0.371 6.371 27 C -0.078 4.078 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.221 0.779 34 H 0.251 0.749 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.255 0.745 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.131 13.417 23.146 32.319 hybrid contribution -2.365 -1.347 -0.900 2.867 sum -20.496 12.069 22.246 32.568 Atomic orbital electron populations 1.22932 0.79279 1.03721 1.01163 1.87937 1.21512 1.28455 1.95657 1.21109 0.87161 0.84859 1.02539 1.18521 0.96986 1.08318 0.91498 1.25682 0.98776 1.04568 1.04396 1.82698 1.03648 1.64967 0.94104 1.24364 0.97377 1.21336 0.99122 1.17371 0.82186 0.75240 0.87533 1.90833 1.82040 1.52093 1.20538 1.45464 1.04840 1.74448 1.10068 1.21845 0.86746 0.96118 0.91003 0.90288 1.21976 0.86033 0.94671 0.97046 1.44629 1.07298 1.34599 1.49076 1.20052 1.01682 1.02707 1.20115 0.93724 1.27245 0.95491 1.07720 0.96642 1.70996 1.40275 1.01557 1.47421 0.83400 0.73677 0.70920 0.78225 1.23951 1.22195 1.15916 1.22961 0.96340 0.90372 0.95725 1.22832 0.91514 0.81830 0.98878 0.86638 1.86498 1.42606 1.20448 1.87566 1.20720 0.91186 0.95450 1.00422 0.89057 0.92268 0.93331 0.89673 0.91716 0.77882 0.74862 0.95385 0.93371 0.94301 0.91997 0.94791 0.74510 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.43 10.69 -148.98 -1.59 -9.02 16 3 C 0.12 1.69 6.18 71.24 0.44 2.13 16 4 C -0.14 -2.45 5.41 -21.05 -0.11 -2.56 16 5 C -0.20 -2.51 10.67 66.81 0.71 -1.79 16 6 S 0.28 3.91 22.16 -56.49 -1.25 2.66 16 7 C -0.30 -7.31 6.45 24.08 0.16 -7.15 16 8 C 0.59 18.75 7.78 86.42 0.67 19.42 16 9 O -0.57 -23.85 16.59 -4.35 -0.07 -23.93 16 10 N -0.70 -19.46 5.23 -440.02 -2.30 -21.76 16 11 C 0.15 5.26 3.04 46.38 0.14 5.40 16 12 H 0.08 3.30 7.73 -2.39 -0.02 3.28 16 13 C 0.13 5.54 6.92 86.85 0.60 6.14 16 14 N -0.63 -31.26 3.33 -691.96 -2.31 -33.57 16 15 C -0.32 -19.11 10.56 84.04 0.89 -18.22 16 16 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 17 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 18 N -0.96 -62.83 13.70 21.65 0.30 -62.54 16 19 Si 1.11 53.80 24.54 68.60 1.68 55.48 16 20 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16 21 H -0.29 -14.04 6.83 99.48 0.68 -13.36 16 22 H -0.23 -9.30 5.44 99.48 0.54 -8.76 16 23 C 0.07 2.84 4.41 86.73 0.38 3.22 16 24 C 0.11 3.23 3.94 31.79 0.13 3.36 16 25 H 0.12 2.46 8.00 -2.39 -0.02 2.44 16 26 O -0.56 -14.58 13.39 -148.98 -2.00 -16.58 16 27 C -0.04 -1.02 9.80 21.72 0.21 -0.81 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 32 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 33 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.41 8.25 7.63 -92.71 -0.71 7.55 16 35 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16 38 H 0.06 2.39 6.82 -2.39 -0.02 2.37 16 39 H 0.03 1.47 3.64 -2.38 -0.01 1.46 16 40 H 0.40 6.20 9.12 -74.06 -0.68 5.53 16 41 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -85.47 353.48 -2.14 -87.61 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.53 Total: 15.28 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.93 Total: 6.36 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -4.31 Total: -117.86 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -3.66 Total: -49.53 kcal Atomic # 14 Polarization: 53.80 SS G_CDS: 1.68 Total: 55.48 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.66 kcal Total: -85.47 -2.14 -87.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077314421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.507 kcal (2) G-P(sol) polarization free energy of solvation -85.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds