Wall clock time and date at job start Tue Mar 31 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36210 * 117.00106 * 2 1 4 4 C 1.34084 * 122.49623 * 359.70990 * 3 2 1 5 5 S 1.70608 * 110.97050 * 179.85475 * 4 3 2 6 6 C 1.75818 * 91.62049 * 0.34066 * 5 4 3 7 7 C 1.46542 * 125.42201 * 179.80902 * 6 5 4 8 8 O 1.21717 * 119.99481 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00797 * 0.02562 * 7 6 5 10 10 C 1.46492 * 120.00386 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45943 * 324.96858 * 10 9 7 12 12 C 1.53042 * 109.46328 * 84.93022 * 10 9 7 13 13 C 1.53195 * 109.31357 * 181.38585 * 12 10 9 14 14 N 1.46922 * 108.77328 * 305.36171 * 13 12 10 15 15 C 1.36939 * 120.63122 * 233.62797 * 14 13 12 16 16 H 1.07999 * 119.99673 * 27.67435 * 15 14 13 17 17 C 1.38811 * 120.00152 * 207.66829 * 15 14 13 18 18 N 1.31620 * 120.00294 * 17.36448 * 17 15 14 19 19 Si 1.86803 * 119.99947 * 197.36371 * 17 15 14 20 20 H 1.48500 * 109.46887 * 90.00046 * 19 17 15 21 21 H 1.48499 * 109.47323 * 209.99996 * 19 17 15 22 22 H 1.48501 * 109.47280 * 330.00328 * 19 17 15 23 23 C 1.46928 * 118.73978 * 53.61168 * 14 13 12 24 24 C 1.53048 * 109.45841 * 204.99532 * 10 9 7 25 25 H 1.09000 * 109.49405 * 58.63160 * 24 10 9 26 26 O 1.42897 * 109.49645 * 298.56543 * 24 10 9 27 27 C 1.36735 * 109.14509 * 359.80788 * 6 5 4 28 28 H 1.09000 * 109.46913 * 60.00139 * 1 2 3 29 29 H 1.09007 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.08988 * 109.47385 * 300.00186 * 1 2 3 31 31 H 1.08000 * 124.51507 * 359.96500 * 4 3 2 32 32 H 0.97003 * 119.99204 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.49031 * 301.33865 * 12 10 9 34 34 H 1.08998 * 109.49974 * 61.42879 * 12 10 9 35 35 H 1.09004 * 109.58059 * 185.57571 * 13 12 10 36 36 H 1.08992 * 109.58408 * 65.15109 * 13 12 10 37 37 H 0.96994 * 120.00272 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.58671 * 186.59941 * 23 14 13 39 39 H 1.08995 * 109.70288 * 66.24614 * 23 14 13 40 40 H 0.96702 * 113.99458 * 179.97438 * 26 24 10 41 41 H 1.08005 * 123.36600 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3668 2.3689 -0.0057 5 16 2.4295 3.7036 0.0000 6 6 3.8354 2.6478 0.0001 7 6 5.2316 3.0927 0.0001 8 8 6.1314 2.2730 0.0006 9 7 5.5196 4.4093 0.0007 10 6 6.9154 4.8539 0.0002 11 1 7.5171 4.1620 0.5895 12 6 7.4392 4.8880 -1.4374 13 6 8.9090 5.3200 -1.4310 14 7 9.0228 6.5989 -0.7169 15 6 9.6329 7.6746 -1.3051 16 1 9.6358 7.7721 -2.3807 17 6 10.2473 8.6396 -0.5190 18 7 10.5492 8.3733 0.7342 19 14 10.6459 10.3163 -1.2396 20 1 9.4962 11.2320 -1.0279 21 1 11.8496 10.8699 -0.5689 22 1 10.9087 10.1800 -2.6948 23 6 8.4694 6.7020 0.6403 24 6 7.0045 6.2546 0.6107 25 1 6.6092 6.2345 1.6263 26 8 6.2424 7.1688 -0.1800 27 6 3.4183 1.3456 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8898 31 1 0.2895 2.4445 -0.0113 32 1 4.8024 5.0625 0.0007 33 1 7.3536 3.8952 -1.8792 34 1 6.8538 5.5982 -2.0212 35 1 9.2585 5.4415 -2.4563 36 1 9.5097 4.5642 -0.9251 37 1 10.9789 9.0474 1.2834 38 1 8.5290 7.7354 0.9817 39 1 9.0338 6.0605 1.3170 40 1 6.2537 8.0779 0.1495 41 1 4.0961 0.5048 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090478564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:14 Heat of formation + Delta-G solvation = -60.006769 kcal Electronic energy + Delta-G solvation = -25454.583863 eV Core-core repulsion = 21655.643817 eV Total energy + Delta-G solvation = -3798.940046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25341 -39.65659 -37.97935 -36.01021 -34.81226 -34.35292 -32.16619 -30.17182 -29.17681 -28.91582 -28.20505 -25.52007 -24.20045 -22.46234 -21.98643 -20.95631 -19.91821 -19.28640 -18.63415 -17.40000 -17.26223 -16.30009 -16.15141 -16.01315 -15.49728 -15.03663 -14.84046 -14.76299 -14.15610 -13.85653 -13.78089 -13.33093 -13.31528 -13.08788 -12.97960 -12.74105 -12.15523 -12.01439 -12.01343 -11.32970 -11.26776 -11.22072 -11.16379 -10.82933 -10.58922 -10.49478 -10.24271 -10.05978 -9.95682 -9.67499 -9.22032 -9.17154 -8.76161 -8.51381 -8.29502 -6.70158 -5.82593 -3.23155 0.25478 1.19817 1.62742 2.18671 2.87909 3.19449 3.34531 3.38327 3.43556 3.45063 4.47030 4.56799 4.64504 4.75930 4.78360 4.90258 4.97468 5.09973 5.27998 5.36836 5.43975 5.47009 5.55179 5.68412 5.81336 5.93188 6.01977 6.18084 6.22860 6.44785 6.53606 6.78047 6.80449 6.89591 6.96683 7.15564 7.41435 7.61021 7.77478 8.20309 8.26161 8.41580 9.16757 9.79817 10.36535 11.26286 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.035332 B = 0.002586 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.299343 B =10825.511931 C =11186.130392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.104 3.896 4 C -0.346 4.346 5 S 0.230 5.770 6 C -0.230 4.230 7 C 0.584 3.416 8 O -0.527 6.527 9 N -0.711 5.711 10 C 0.163 3.837 11 H 0.094 0.906 12 C -0.137 4.137 13 C 0.148 3.852 14 N -0.583 5.583 15 C -0.242 4.242 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.907 5.907 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.145 3.855 24 C 0.072 3.928 25 H 0.045 0.955 26 O -0.560 6.560 27 C -0.073 4.073 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.170 0.830 32 H 0.400 0.600 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.254 0.746 38 H 0.097 0.903 39 H 0.028 0.972 40 H 0.376 0.624 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.224 -10.448 0.956 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.047 3.953 4 C -0.484 4.484 5 S 0.496 5.504 6 C -0.351 4.351 7 C 0.369 3.631 8 O -0.405 6.405 9 N -0.361 5.361 10 C 0.060 3.940 11 H 0.112 0.888 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.305 5.305 15 C -0.371 4.371 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.552 5.552 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.018 3.982 24 C 0.011 3.989 25 H 0.062 0.938 26 O -0.365 6.365 27 C -0.108 4.108 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.188 0.812 32 H 0.234 0.766 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.046 0.954 40 H 0.223 0.777 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.711 -10.066 0.712 23.039 hybrid contribution -0.337 0.209 0.089 0.406 sum -21.048 -9.857 0.801 23.256 Atomic orbital electron populations 1.23040 0.78269 1.03986 1.01261 1.86123 1.21224 1.25183 1.89449 1.17556 0.91551 0.84732 1.01496 1.25061 1.05722 0.97574 1.20018 1.83017 0.92776 1.06241 1.68373 1.24590 0.98020 0.97417 1.15055 1.16892 0.86024 0.83106 0.77104 1.90848 1.46552 1.53012 1.50104 1.46098 1.10144 1.05837 1.74010 1.21097 0.80206 0.94116 0.98609 0.88806 1.22325 0.99641 1.00496 0.95294 1.20897 0.91870 0.88347 0.96764 1.43889 1.65173 1.07460 1.13984 1.19198 1.27640 0.98785 0.91517 0.91604 1.25021 0.98299 0.99981 0.96662 1.70016 1.44343 1.33255 1.07629 0.86260 0.77396 0.84431 0.78517 1.21515 1.21889 1.20473 1.21440 0.86966 1.02496 0.87286 1.22855 0.96020 0.88256 0.91757 0.93756 1.86342 1.72391 1.21658 1.56157 1.19954 0.92830 0.97004 1.01001 0.92752 0.88120 0.92764 0.81242 0.76582 0.92729 0.91087 0.92344 0.96129 0.93636 0.88525 0.95354 0.77723 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.93 101.05 1.00 1.18 16 2 O -0.31 -3.12 10.56 -20.41 -0.22 -3.34 16 3 C 0.10 1.13 6.61 -41.23 -0.27 0.86 16 4 C -0.35 -3.17 9.81 29.27 0.29 -2.88 16 5 S 0.23 2.23 22.15 -107.50 -2.38 -0.15 16 6 C -0.23 -2.97 6.45 -36.78 -0.24 -3.21 16 7 C 0.58 9.23 7.74 -12.91 -0.10 9.13 16 8 O -0.53 -10.05 16.50 5.17 0.09 -9.97 16 9 N -0.71 -10.82 5.05 -55.11 -0.28 -11.10 16 10 C 0.16 2.89 2.20 -67.89 -0.15 2.74 16 11 H 0.09 1.79 7.57 -51.93 -0.39 1.39 16 12 C -0.14 -2.59 5.51 -26.61 -0.15 -2.74 16 13 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 14 N -0.58 -14.20 2.94 -172.32 -0.51 -14.70 16 15 C -0.24 -6.47 9.58 -15.06 -0.14 -6.61 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 17 C 0.00 -0.05 4.91 -17.43 -0.09 -0.13 16 18 N -0.91 -25.45 11.19 55.49 0.62 -24.83 16 19 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C 0.15 3.25 4.95 -3.71 -0.02 3.24 16 24 C 0.07 1.29 3.38 -26.61 -0.09 1.20 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 O -0.56 -9.65 12.09 -35.23 -0.43 -10.08 16 27 C -0.07 -0.91 10.00 -40.31 -0.40 -1.32 16 28 H 0.05 0.27 7.83 -51.93 -0.41 -0.14 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.26 7.85 -51.94 -0.41 -0.14 16 31 H 0.17 1.11 6.96 -52.49 -0.37 0.75 16 32 H 0.40 5.38 7.36 -40.82 -0.30 5.08 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.40 7.61 -51.93 -0.40 1.01 16 35 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.10 2.37 6.03 -51.93 -0.31 2.06 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.38 5.59 9.08 45.56 0.41 6.00 16 41 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -31.68 352.19 -7.87 -39.55 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.67 Total: 8.49 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.38 Total: 4.61 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.16 Total: -50.63 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.56 Total: -23.38 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.38 Total: -0.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.68 -7.87 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090478564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.455 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds