Wall clock time and date at job start Tue Mar 31 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36210 * 117.00106 * 2 1 4 4 C 1.34084 * 122.49623 * 359.70990 * 3 2 1 5 5 S 1.70608 * 110.97050 * 179.85475 * 4 3 2 6 6 C 1.75818 * 91.62049 * 0.34066 * 5 4 3 7 7 C 1.46542 * 125.42201 * 179.80902 * 6 5 4 8 8 O 1.21717 * 119.99481 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00797 * 0.02562 * 7 6 5 10 10 C 1.46492 * 120.00386 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45943 * 324.96858 * 10 9 7 12 12 C 1.53042 * 109.46328 * 84.93022 * 10 9 7 13 13 C 1.53195 * 109.31357 * 181.38585 * 12 10 9 14 14 N 1.46922 * 108.77328 * 305.36171 * 13 12 10 15 15 C 1.36939 * 120.63122 * 233.62797 * 14 13 12 16 16 H 1.07999 * 119.99673 * 27.67435 * 15 14 13 17 17 C 1.38811 * 120.00152 * 207.66829 * 15 14 13 18 18 N 1.31620 * 120.00294 * 17.36448 * 17 15 14 19 19 Si 1.86803 * 119.99947 * 197.36371 * 17 15 14 20 20 H 1.48500 * 109.46887 * 90.00046 * 19 17 15 21 21 H 1.48499 * 109.47323 * 209.99996 * 19 17 15 22 22 H 1.48501 * 109.47280 * 330.00328 * 19 17 15 23 23 C 1.46928 * 118.73978 * 53.61168 * 14 13 12 24 24 C 1.53048 * 109.45841 * 204.99532 * 10 9 7 25 25 H 1.09000 * 109.49405 * 58.63160 * 24 10 9 26 26 O 1.42897 * 109.49645 * 298.56543 * 24 10 9 27 27 C 1.36735 * 109.14509 * 359.80788 * 6 5 4 28 28 H 1.09000 * 109.46913 * 60.00139 * 1 2 3 29 29 H 1.09007 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.08988 * 109.47385 * 300.00186 * 1 2 3 31 31 H 1.08000 * 124.51507 * 359.96500 * 4 3 2 32 32 H 0.97003 * 119.99204 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.49031 * 301.33865 * 12 10 9 34 34 H 1.08998 * 109.49974 * 61.42879 * 12 10 9 35 35 H 1.09004 * 109.58059 * 185.57571 * 13 12 10 36 36 H 1.08992 * 109.58408 * 65.15109 * 13 12 10 37 37 H 0.96994 * 120.00272 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.58671 * 186.59941 * 23 14 13 39 39 H 1.08995 * 109.70288 * 66.24614 * 23 14 13 40 40 H 0.96702 * 113.99458 * 179.97438 * 26 24 10 41 41 H 1.08005 * 123.36600 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3668 2.3689 -0.0057 5 16 2.4295 3.7036 0.0000 6 6 3.8354 2.6478 0.0001 7 6 5.2316 3.0927 0.0001 8 8 6.1314 2.2730 0.0006 9 7 5.5196 4.4093 0.0007 10 6 6.9154 4.8539 0.0002 11 1 7.5171 4.1620 0.5895 12 6 7.4392 4.8880 -1.4374 13 6 8.9090 5.3200 -1.4310 14 7 9.0228 6.5989 -0.7169 15 6 9.6329 7.6746 -1.3051 16 1 9.6358 7.7721 -2.3807 17 6 10.2473 8.6396 -0.5190 18 7 10.5492 8.3733 0.7342 19 14 10.6459 10.3163 -1.2396 20 1 9.4962 11.2320 -1.0279 21 1 11.8496 10.8699 -0.5689 22 1 10.9087 10.1800 -2.6948 23 6 8.4694 6.7020 0.6403 24 6 7.0045 6.2546 0.6107 25 1 6.6092 6.2345 1.6263 26 8 6.2424 7.1688 -0.1800 27 6 3.4183 1.3456 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8898 31 1 0.2895 2.4445 -0.0113 32 1 4.8024 5.0625 0.0007 33 1 7.3536 3.8952 -1.8792 34 1 6.8538 5.5982 -2.0212 35 1 9.2585 5.4415 -2.4563 36 1 9.5097 4.5642 -0.9251 37 1 10.9789 9.0474 1.2834 38 1 8.5290 7.7354 0.9817 39 1 9.0338 6.0605 1.3170 40 1 6.2537 8.0779 0.1495 41 1 4.0961 0.5048 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090478564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:13 Heat of formation + Delta-G solvation = -83.934705 kcal Electronic energy + Delta-G solvation = -25455.621456 eV Core-core repulsion = 21655.643817 eV Total energy + Delta-G solvation = -3799.977640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30158 -40.68307 -39.45451 -36.85503 -36.48528 -35.76955 -33.95697 -31.61332 -30.79690 -30.14573 -28.76083 -27.14431 -25.40849 -24.03140 -23.50970 -22.15683 -21.25970 -20.45114 -19.73118 -19.02778 -18.11960 -17.59036 -17.17660 -17.07227 -16.83383 -16.76737 -16.08372 -15.75525 -15.50627 -15.39785 -15.31282 -14.98793 -14.54991 -14.13396 -13.88303 -13.73356 -13.68184 -13.63945 -13.13604 -12.78239 -12.65393 -12.58530 -12.34849 -12.26473 -12.06144 -12.00291 -11.91555 -11.83077 -11.49128 -11.21531 -10.75132 -10.57269 -10.21723 -9.93765 -9.04663 -8.67479 -7.86394 -5.30227 -0.65168 0.36963 0.82233 1.29880 1.49802 1.51516 1.60214 1.89413 2.05484 2.49498 2.53180 3.25592 3.39047 3.61101 3.73793 3.85689 3.95223 4.00794 4.10297 4.34284 4.38901 4.39485 4.42391 4.55203 4.60630 4.70912 4.75821 4.82694 4.86753 4.94207 5.01946 5.07050 5.18232 5.37655 5.44072 5.57295 5.66935 6.25010 6.37734 6.40831 6.92318 7.03803 7.16024 7.83644 8.36690 9.20160 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.035332 B = 0.002586 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.299343 B =10825.511931 C =11186.130392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.087 3.913 4 C -0.327 4.327 5 S 0.285 5.715 6 C -0.265 4.265 7 C 0.586 3.414 8 O -0.569 6.569 9 N -0.701 5.701 10 C 0.168 3.832 11 H 0.079 0.921 12 C -0.121 4.121 13 C 0.145 3.855 14 N -0.598 5.598 15 C -0.252 4.252 16 H 0.062 0.938 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.275 1.275 23 C 0.150 3.850 24 C 0.091 3.909 25 H 0.071 0.929 26 O -0.561 6.561 27 C -0.078 4.078 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.202 0.798 32 H 0.411 0.589 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.013 0.987 37 H 0.251 0.749 38 H 0.075 0.925 39 H 0.005 0.995 40 H 0.388 0.612 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.363 -9.809 0.616 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.030 3.970 4 C -0.465 4.465 5 S 0.552 5.448 6 C -0.386 4.386 7 C 0.373 3.627 8 O -0.450 6.450 9 N -0.351 5.351 10 C 0.064 3.936 11 H 0.097 0.903 12 C -0.161 4.161 13 C 0.019 3.981 14 N -0.321 5.321 15 C -0.383 4.383 16 H 0.080 0.920 17 C -0.243 4.243 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.207 1.207 21 H -0.225 1.225 22 H -0.200 1.200 23 C 0.023 3.977 24 C 0.029 3.971 25 H 0.089 0.911 26 O -0.368 6.368 27 C -0.114 4.114 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.085 0.915 31 H 0.219 0.781 32 H 0.248 0.752 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.023 0.977 40 H 0.237 0.763 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.906 -9.410 0.363 25.694 hybrid contribution 0.553 -0.054 0.184 0.585 sum -23.353 -9.464 0.548 25.204 Atomic orbital electron populations 1.23356 0.76060 1.05665 1.02393 1.86103 1.23539 1.24968 1.89601 1.17473 0.91020 0.85731 1.02727 1.25479 1.07265 0.96753 1.16987 1.82800 0.90441 1.04901 1.66659 1.24270 0.97683 0.98633 1.18010 1.17232 0.87025 0.82591 0.75867 1.90820 1.48252 1.53931 1.51984 1.45833 1.09214 1.06124 1.73954 1.20810 0.81537 0.93818 0.97447 0.90327 1.22098 0.97557 1.00300 0.96163 1.20966 0.93658 0.87229 0.96274 1.44110 1.65500 1.07871 1.14610 1.19422 1.27632 0.99633 0.91569 0.92032 1.25698 0.98555 1.02966 0.97046 1.70161 1.45288 1.34012 1.08727 0.85268 0.76908 0.80442 0.77775 1.20651 1.22540 1.20011 1.21328 0.89623 1.00808 0.85937 1.22513 0.93023 0.88237 0.93291 0.91089 1.86315 1.71638 1.22495 1.56320 1.20013 0.93910 0.96667 1.00836 0.91554 0.86433 0.91511 0.78099 0.75246 0.92354 0.91449 0.92450 0.96941 0.94006 0.90677 0.97667 0.76313 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.93 113.37 1.13 1.30 16 2 O -0.33 -6.15 10.56 -95.94 -1.01 -7.16 16 3 C 0.09 1.74 6.61 21.20 0.14 1.88 16 4 C -0.33 -4.88 9.81 66.87 0.66 -4.22 16 5 S 0.29 4.67 22.15 -56.49 -1.25 3.42 16 6 C -0.27 -6.60 6.45 24.08 0.16 -6.45 16 7 C 0.59 18.38 7.74 86.41 0.67 19.05 16 8 O -0.57 -22.24 16.50 -4.40 -0.07 -22.31 16 9 N -0.70 -20.56 5.05 -446.49 -2.25 -22.81 16 10 C 0.17 5.90 2.20 45.02 0.10 6.00 16 11 H 0.08 3.04 7.57 -2.39 -0.02 3.03 16 12 C -0.12 -4.55 5.51 30.67 0.17 -4.39 16 13 C 0.15 6.34 6.52 86.36 0.56 6.90 16 14 N -0.60 -29.55 2.94 -699.10 -2.05 -31.60 16 15 C -0.25 -13.61 9.58 84.03 0.81 -12.80 16 16 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 17 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 18 N -0.94 -53.33 11.19 21.65 0.24 -53.09 16 19 Si 0.97 43.74 29.59 68.60 2.03 45.77 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.15 6.81 4.95 86.36 0.43 7.24 16 24 C 0.09 3.16 3.38 30.67 0.10 3.26 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 O -0.56 -18.28 12.09 -148.98 -1.80 -20.08 16 27 C -0.08 -1.92 10.00 21.80 0.22 -1.71 16 28 H 0.07 0.43 7.83 -2.39 -0.02 0.41 16 29 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.43 7.85 -2.39 -0.02 0.41 16 31 H 0.20 1.66 6.96 -2.91 -0.02 1.64 16 32 H 0.41 10.16 7.36 -92.71 -0.68 9.47 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.60 7.61 -2.39 -0.02 2.58 16 35 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.08 3.74 6.03 -2.39 -0.01 3.73 16 39 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.39 10.77 9.08 -74.06 -0.67 10.10 16 41 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -69.28 352.19 -0.90 -70.18 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.28 Total: 23.78 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.55 Total: 13.91 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -4.06 Total: -107.51 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -2.89 Total: -49.56 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.25 Total: 3.42 kcal Total: -69.28 -0.90 -70.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090478564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.758 kcal (2) G-P(sol) polarization free energy of solvation -69.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds