Wall clock time and date at job start Tue Mar 31 2020 04:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47324 * 2 1 4 4 C 1.50697 * 110.43179 * 61.08772 * 3 2 1 5 5 O 1.20821 * 119.99521 * 118.91505 * 4 3 2 6 6 O 1.34224 * 120.00128 * 298.91681 * 4 3 2 7 7 C 1.45203 * 117.00254 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.46892 * 29.99871 * 7 6 4 9 9 C 1.53001 * 109.47071 * 269.99985 * 7 6 4 10 10 C 1.50696 * 109.47555 * 149.99425 * 7 6 4 11 11 O 1.21285 * 119.99883 * 8.56871 * 10 7 6 12 12 N 1.34773 * 120.00324 * 188.56747 * 10 7 6 13 13 C 1.46506 * 119.99984 * 4.58708 * 12 10 7 14 14 C 1.46497 * 120.00415 * 184.58653 * 12 10 7 15 15 C 1.50702 * 109.47380 * 89.99711 * 14 12 10 16 16 H 1.08002 * 119.99688 * 0.02562 * 15 14 12 17 17 C 1.37867 * 120.00170 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99997 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00226 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.46759 * 89.99907 * 19 17 15 21 21 H 1.48500 * 109.47273 * 209.99671 * 19 17 15 22 22 H 1.48496 * 109.47246 * 330.00111 * 19 17 15 23 23 C 1.54622 * 110.48635 * 183.77604 * 3 2 1 24 24 C 1.54655 * 101.68776 * 93.66765 * 23 3 2 25 25 N 1.46766 * 105.38218 * 25.76476 * 24 23 3 26 26 C 1.34413 * 111.29928 * 342.58670 * 25 24 23 27 27 O 1.21279 * 124.94462 * 180.64850 * 26 25 24 28 28 H 1.08996 * 109.47126 * 299.99887 * 1 2 3 29 29 H 1.08998 * 109.47528 * 60.00256 * 1 2 3 30 30 H 1.09007 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46697 * 240.00176 * 2 1 3 32 32 H 1.08999 * 109.47343 * 120.00263 * 2 1 3 33 33 H 1.08998 * 109.47083 * 187.14299 * 9 7 6 34 34 H 1.09003 * 109.46809 * 307.14861 * 9 7 6 35 35 H 1.08994 * 109.46848 * 67.14468 * 9 7 6 36 36 H 1.08996 * 109.46978 * 86.11582 * 13 12 10 37 37 H 1.08991 * 109.47155 * 206.11973 * 13 12 10 38 38 H 1.09004 * 109.47010 * 326.12188 * 13 12 10 39 39 H 1.09001 * 109.47332 * 209.99923 * 14 12 10 40 40 H 1.09002 * 109.46970 * 330.00175 * 14 12 10 41 41 H 0.97003 * 120.00408 * 179.97438 * 18 17 15 42 42 H 1.09005 * 110.96656 * 212.00172 * 23 3 2 43 43 H 1.09001 * 110.97348 * 335.76157 * 23 3 2 44 44 H 1.09003 * 110.39835 * 266.73592 * 24 23 3 45 45 H 1.08999 * 110.18844 * 144.68127 * 24 23 3 46 46 H 0.97002 * 124.34857 * 162.85789 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5717 2.1661 1.2362 5 8 2.3785 2.6073 2.0198 6 8 0.2584 2.3203 1.4665 7 6 -0.1200 3.0280 2.6766 8 1 0.6515 3.7558 2.9281 9 6 -0.2725 2.0288 3.8252 10 6 -1.4290 3.7405 2.4534 11 8 -2.0651 3.5374 1.4409 12 7 -1.8929 4.6035 3.3789 13 6 -1.0787 4.9255 4.5536 14 6 -3.2113 5.2196 3.2103 15 6 -4.2581 4.3520 3.8604 16 1 -3.9700 3.4337 4.3504 17 6 -5.5833 4.7310 3.8304 18 7 -6.4968 3.9741 4.3981 19 14 -6.0815 6.3197 2.9834 20 1 -6.3851 6.0453 1.5558 21 1 -7.2868 6.8778 3.6474 22 1 -4.9687 7.2987 3.0734 23 6 3.5830 1.4709 -0.0954 24 6 3.8002 1.6066 -1.6206 25 7 2.5852 2.2528 -2.1308 26 6 1.5780 2.1674 -1.2449 27 8 0.4613 2.6079 -1.4180 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 -0.6780 2.5389 4.6990 34 1 -0.9498 1.2297 3.5240 35 1 0.7017 1.6062 4.0708 36 1 -0.3977 5.7412 4.3110 37 1 -1.7289 5.2269 5.3747 38 1 -0.5037 4.0477 4.8487 39 1 -3.2145 6.2045 3.6774 40 1 -3.4319 5.3206 2.1477 41 1 -7.4292 4.2409 4.3773 42 1 3.9911 2.3290 0.4387 43 1 4.0141 0.5412 0.2761 44 1 3.9244 0.6240 -2.0756 45 1 4.6718 2.2293 -1.8225 46 1 2.5167 2.6826 -2.9977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870051621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:08 Heat of formation + Delta-G solvation = -137.088556 kcal Electronic energy + Delta-G solvation = -29625.592841 eV Core-core repulsion = 25516.390501 eV Total energy + Delta-G solvation = -4109.202340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69452 -40.06848 -38.86174 -36.92400 -36.25002 -34.94104 -34.53667 -32.73688 -31.58639 -30.39386 -28.33240 -27.86293 -26.21365 -24.68496 -23.28855 -23.18689 -22.18452 -21.65121 -19.81126 -18.79125 -17.74669 -17.58188 -16.93573 -16.70331 -16.65375 -16.13772 -15.63889 -15.27074 -14.66017 -14.56677 -14.51086 -14.15367 -13.95261 -13.74434 -13.41887 -13.25055 -13.16906 -12.89483 -12.61686 -12.44318 -12.30009 -12.22811 -12.16661 -11.80638 -11.70573 -11.44986 -11.38492 -11.20153 -10.99193 -10.86924 -10.64527 -10.54512 -10.44188 -10.12372 -9.88372 -9.52542 -9.43791 -8.92620 -8.57042 -7.71569 -6.07351 -4.06367 1.87305 2.20070 2.56391 3.02202 3.25526 3.32039 3.37923 3.40766 3.73615 3.80272 3.97135 4.32201 4.41905 4.45197 4.56185 4.79218 4.83865 5.00591 5.01280 5.10104 5.13656 5.17984 5.26509 5.35898 5.45274 5.46952 5.59774 5.68581 5.74591 5.82582 5.87664 6.05354 6.09772 6.28396 6.35387 6.42985 6.56224 6.67787 6.69554 6.96386 7.30753 7.60206 7.63023 7.96735 8.17972 8.47542 8.90302 8.96700 9.52851 11.05861 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.020114 B = 0.003304 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.751138 B = 8472.341231 C = 8819.656405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.091 4.091 4 C 0.484 3.516 5 O -0.506 6.506 6 O -0.298 6.298 7 C 0.067 3.933 8 H 0.102 0.898 9 C -0.170 4.170 10 C 0.510 3.490 11 O -0.509 6.509 12 N -0.594 5.594 13 C 0.068 3.932 14 C 0.217 3.783 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.120 4.120 24 C 0.102 3.898 25 N -0.733 5.733 26 C 0.526 3.474 27 O -0.481 6.481 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.197 -6.856 -7.898 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.135 4.135 3 C -0.096 4.096 4 C 0.326 3.674 5 O -0.394 6.394 6 O -0.211 6.211 7 C 0.008 3.992 8 H 0.120 0.880 9 C -0.228 4.228 10 C 0.295 3.705 11 O -0.383 6.383 12 N -0.328 5.328 13 C -0.076 4.076 14 C 0.096 3.904 15 C -0.569 4.569 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.157 4.157 24 C -0.023 4.023 25 N -0.391 5.391 26 C 0.309 3.691 27 O -0.352 6.352 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 24.217 -6.626 -8.131 26.391 hybrid contribution -0.236 0.998 -0.535 1.156 sum 23.981 -5.628 -8.666 26.113 Atomic orbital electron populations 1.22092 0.93059 1.02129 1.05529 1.21451 0.98550 0.89889 1.03579 1.21463 0.98074 0.98489 0.91530 1.22745 0.81591 0.76793 0.86289 1.90628 1.55097 1.46656 1.47025 1.86807 1.24319 1.67580 1.42420 1.22676 0.97249 0.95439 0.83823 0.88021 1.22310 1.03345 0.99867 0.97231 1.19753 0.86050 0.80437 0.84302 1.90741 1.58333 1.62324 1.26941 1.47709 1.19539 1.44113 1.21427 1.21984 0.95738 1.00343 0.89496 1.19718 0.79002 0.93391 0.98250 1.21324 0.90789 1.08679 1.36090 0.90636 1.24839 0.96267 0.96963 0.94856 1.69893 1.01400 1.37899 1.44339 0.86856 0.78455 0.83982 0.80454 1.19809 1.21055 1.19050 1.22813 0.91122 1.05976 0.95838 1.22153 0.87890 0.98532 0.93683 1.46090 1.12754 1.59685 1.20558 1.20110 0.84820 0.79358 0.84846 1.90937 1.19373 1.46536 1.78394 0.89933 0.91256 0.92245 0.90089 0.90099 0.88859 0.90442 0.91252 0.93466 0.89991 0.91416 0.94950 0.94307 0.92542 0.87993 0.88019 0.90506 0.89634 0.74558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.14 37.16 0.34 -1.87 16 2 C -0.10 -0.91 4.94 -26.73 -0.13 -1.05 16 3 C -0.09 -1.01 0.60 -155.67 -0.09 -1.11 16 4 C 0.48 7.14 6.49 36.00 0.23 7.38 16 5 O -0.51 -7.64 14.76 -18.75 -0.28 -7.91 16 6 O -0.30 -5.26 6.15 -46.85 -0.29 -5.55 16 7 C 0.07 1.16 2.16 -27.88 -0.06 1.10 16 8 H 0.10 1.61 6.73 -51.93 -0.35 1.26 16 9 C -0.17 -2.48 9.14 37.16 0.34 -2.14 16 10 C 0.51 11.32 7.03 -10.99 -0.08 11.25 16 11 O -0.51 -13.70 16.08 -13.95 -0.22 -13.92 16 12 N -0.59 -12.77 2.86 -182.95 -0.52 -13.29 16 13 C 0.07 1.07 9.80 59.85 0.59 1.66 16 14 C 0.22 5.46 4.25 -5.19 -0.02 5.44 16 15 C -0.53 -15.41 9.94 -34.44 -0.34 -15.76 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 19 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 20 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 23 C -0.12 -0.84 5.99 -25.01 -0.15 -0.99 16 24 C 0.10 0.50 7.79 -3.03 -0.02 0.48 16 25 N -0.73 -6.13 6.24 -59.10 -0.37 -6.50 16 26 C 0.53 6.88 6.62 -10.86 -0.07 6.81 16 27 O -0.48 -8.82 16.12 3.79 0.06 -8.76 16 28 H 0.08 1.28 5.50 -51.93 -0.29 1.00 16 29 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.30 5.46 -51.93 -0.28 1.01 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 38 H 0.07 0.90 4.31 -51.93 -0.22 0.68 16 39 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 40 H 0.04 1.06 6.79 -51.93 -0.35 0.70 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.10 0.83 7.07 -51.93 -0.37 0.46 16 43 H 0.10 0.46 7.90 -51.93 -0.41 0.05 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.41 2.80 8.96 -40.82 -0.37 2.43 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -39.13 369.58 -6.25 -45.38 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.73 Total: 1.48 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 0.43 Total: 13.28 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.12 Total: -46.89 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.73 Total: -36.15 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.13 -6.25 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870051621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.706 kcal (2) G-P(sol) polarization free energy of solvation -39.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds