Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.55443 * 2 1 4 4 C 1.52878 * 109.58520 * 240.01163 * 2 1 3 5 5 N 1.47152 * 108.60771 * 187.91843 * 4 2 1 6 6 C 1.34774 * 120.98234 * 230.49717 * 5 4 2 7 7 O 1.21350 * 120.00008 * 181.15037 * 6 5 4 8 8 C 1.49449 * 120.00079 * 1.15439 * 6 5 4 9 9 O 1.21348 * 119.99882 * 353.45500 * 8 6 5 10 10 N 1.34773 * 120.00094 * 173.45875 * 8 6 5 11 11 C 1.47428 * 125.64797 * 359.95628 * 10 8 6 12 12 C 1.55384 * 104.87421 * 204.16740 * 11 10 8 13 13 C 1.55158 * 101.36680 * 323.01776 * 12 11 10 14 14 O 1.42897 * 110.72036 * 277.04261 * 13 12 11 15 15 C 1.50700 * 110.71892 * 153.94693 * 13 12 11 16 16 H 1.07997 * 120.00254 * 2.43790 * 15 13 12 17 17 C 1.37877 * 119.99921 * 182.44008 * 15 13 12 18 18 N 1.31514 * 120.00059 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00191 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47010 * 89.99900 * 19 17 15 21 21 H 1.48501 * 109.47360 * 210.00048 * 19 17 15 22 22 H 1.48500 * 109.46899 * 330.00072 * 19 17 15 23 23 C 1.47020 * 125.65019 * 179.97438 * 10 8 6 24 24 C 1.47152 * 118.03396 * 50.22972 * 5 4 2 25 25 H 1.08999 * 109.68116 * 189.95090 * 24 5 4 26 26 C 1.52997 * 109.68433 * 69.43667 * 24 5 4 27 27 C 1.53293 * 108.38299 * 309.71437 * 24 5 4 28 28 O 1.42953 * 109.51360 * 120.12536 * 2 1 3 29 29 H 1.08999 * 109.47146 * 299.87324 * 1 2 3 30 30 H 1.09005 * 109.47051 * 59.87681 * 1 2 3 31 31 H 1.09001 * 109.46865 * 179.86856 * 1 2 3 32 32 H 1.09000 * 109.61994 * 68.10169 * 4 2 1 33 33 H 1.09000 * 109.51952 * 307.68544 * 4 2 1 34 34 H 1.08997 * 110.36900 * 323.00292 * 11 10 8 35 35 H 1.09003 * 110.36391 * 85.21859 * 11 10 8 36 36 H 1.09004 * 111.19056 * 204.98548 * 12 11 10 37 37 H 1.08997 * 111.02506 * 80.98156 * 12 11 10 38 38 H 0.96705 * 114.00394 * 177.56055 * 14 13 12 39 39 H 0.96999 * 119.99990 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.88285 * 59.48519 * 23 10 8 41 41 H 1.09000 * 110.01474 * 298.39600 * 23 10 8 42 42 H 1.09000 * 109.47398 * 60.00039 * 26 24 5 43 43 H 1.08999 * 109.47417 * 180.02562 * 26 24 5 44 44 H 1.09008 * 109.47059 * 299.99950 * 26 24 5 45 45 H 1.09001 * 109.51341 * 172.23327 * 27 24 5 46 46 H 1.09005 * 109.51426 * 292.32569 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0425 -0.7199 -1.2475 5 7 3.5012 -0.8760 -1.1336 6 6 4.3194 -0.5031 -2.1376 7 8 5.5183 -0.6592 -2.0331 8 6 3.7501 0.1025 -3.3796 9 8 2.5476 0.1501 -3.5353 10 7 4.5723 0.5957 -4.3268 11 6 6.0453 0.6035 -4.2667 12 6 6.4766 1.7676 -5.2012 13 6 5.4267 1.6522 -6.3379 14 8 5.8190 0.6612 -7.2897 15 6 5.2219 2.9844 -7.0117 16 1 5.8053 3.8400 -6.7053 17 6 4.2895 3.1111 -8.0195 18 7 3.5785 2.0694 -8.3923 19 14 4.0350 4.7627 -8.8544 20 1 4.9459 4.8727 -10.0220 21 1 2.6269 4.8739 -9.3129 22 1 4.3298 5.8545 -7.8919 23 6 4.1488 1.2155 -5.5909 24 6 4.0407 -1.4457 0.1113 25 1 5.1253 -1.3381 0.1245 26 6 3.6688 -2.9268 0.2039 27 6 3.4313 -0.6854 1.2947 28 8 2.0075 -0.6763 1.1654 29 1 -0.3633 0.5119 0.8911 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3633 -1.0277 -0.0024 32 1 1.8044 -0.1313 -2.1335 33 1 1.5728 -1.7008 -1.3207 34 1 6.3825 0.7912 -3.2473 35 1 6.4448 -0.3437 -4.6293 36 1 7.4853 1.6126 -5.5840 37 1 6.3969 2.7280 -4.6919 38 1 5.1784 0.5235 -8.0010 39 1 2.9228 2.1584 -9.1016 40 1 3.5238 2.0847 -5.3865 41 1 3.5955 0.4946 -6.1929 42 1 4.0878 -3.4607 -0.6491 43 1 4.0696 -3.3451 1.1272 44 1 2.5836 -3.0299 0.1997 45 1 3.7092 -1.1785 2.2263 46 1 3.8036 0.3390 1.3001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326528656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -136.419657 kcal Electronic energy + Delta-G solvation = -29654.740938 eV Core-core repulsion = 25545.567603 eV Total energy + Delta-G solvation = -4109.173334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99503 -39.43373 -38.12699 -37.45103 -35.23742 -34.29416 -33.50791 -32.26314 -30.62392 -30.24529 -28.00098 -26.68377 -26.57533 -25.82978 -24.10626 -22.79123 -21.81965 -20.21813 -19.60244 -19.00016 -17.29078 -17.14275 -17.02661 -16.54377 -16.03707 -15.94046 -15.42995 -15.23331 -14.86336 -14.55903 -14.35004 -14.27482 -13.61264 -13.18522 -13.10970 -13.03771 -12.89527 -12.54382 -12.46574 -12.40055 -12.34879 -11.92769 -11.84437 -11.75043 -11.57981 -11.31687 -11.11836 -10.96961 -10.84730 -10.67028 -10.53432 -10.49584 -10.27785 -10.11968 -9.38166 -8.87379 -8.73864 -8.66772 -8.38681 -8.12503 -6.35628 -4.44362 1.66036 2.38582 3.17341 3.25158 3.27665 3.43347 3.48769 3.64718 4.21552 4.36506 4.54063 4.63519 4.86398 4.88758 4.92971 4.97052 5.12686 5.30861 5.33857 5.40253 5.42357 5.55157 5.61135 5.70335 5.75058 5.76500 5.81749 5.92246 5.97235 5.98222 6.07993 6.20631 6.30095 6.44668 6.70270 6.75061 6.77759 6.97459 7.07576 7.13590 7.25588 7.66318 7.70442 7.94356 7.96800 8.31832 8.59611 9.24016 9.34069 10.72217 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.003343 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.127265 B = 8373.608513 C = 9183.992509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.061 0.939 4 C 0.026 3.974 5 N -0.585 5.585 6 C 0.513 3.487 7 O -0.518 6.518 8 C 0.510 3.490 9 O -0.528 6.528 10 N -0.569 5.569 11 C 0.100 3.900 12 C -0.120 4.120 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.098 3.902 24 C 0.098 3.902 25 H 0.108 0.892 26 C -0.154 4.154 27 C 0.057 3.943 28 O -0.379 6.379 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.166 0.834 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.384 0.616 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -5.588 16.203 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.079 0.921 4 C -0.095 4.095 5 N -0.320 5.320 6 C 0.297 3.703 7 O -0.393 6.393 8 C 0.293 3.707 9 O -0.410 6.410 10 N -0.300 5.300 11 C -0.022 4.022 12 C -0.158 4.158 13 C 0.207 3.793 14 O -0.393 6.393 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.023 4.023 24 C -0.006 4.006 25 H 0.126 0.874 26 C -0.212 4.212 27 C -0.021 4.021 28 O -0.297 6.297 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.182 0.818 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.235 0.765 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.124 0.876 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.168 -5.846 16.582 17.715 hybrid contribution -0.582 0.828 -0.954 1.391 sum -2.750 -5.019 15.628 16.643 Atomic orbital electron populations 1.21700 0.92092 1.03136 1.02916 1.22475 0.95727 0.95400 0.84865 0.92107 1.23856 0.78418 1.03897 1.03335 1.48057 1.07849 1.60810 1.15252 1.20310 0.86408 0.79140 0.84463 1.90701 1.14433 1.53895 1.80288 1.19575 0.86269 0.80739 0.84138 1.90279 1.14001 1.59273 1.77413 1.48731 1.08301 1.54066 1.18865 1.22706 0.78583 1.00003 1.00894 1.22912 1.00251 0.96821 0.95861 1.19509 0.86923 0.87265 0.85573 1.86117 1.51154 1.60882 1.41110 1.21523 1.21630 0.95239 1.19206 0.91362 1.25081 0.94500 0.97506 0.96156 1.69633 1.24194 1.29827 1.29831 0.86379 0.77507 0.83209 0.79703 1.20321 1.20964 1.19672 1.23300 1.00904 0.97048 0.81019 1.21983 1.00608 0.94121 0.83840 0.87431 1.22001 1.02746 0.94213 1.02252 1.22934 0.81601 0.99813 0.97720 1.87926 1.20407 1.77492 1.43919 0.91657 0.90343 0.91673 0.81802 0.90963 0.89912 0.91057 0.90156 0.90449 0.76481 0.91871 0.90788 0.90906 0.92225 0.91282 0.91624 0.87648 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.16 0.36 -0.96 16 2 C 0.07 0.84 3.39 -26.79 -0.09 0.75 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.03 0.34 5.25 -3.75 -0.02 0.32 16 5 N -0.59 -8.31 2.72 -165.51 -0.45 -8.76 16 6 C 0.51 8.76 7.72 -11.59 -0.09 8.67 16 7 O -0.52 -9.33 13.36 5.50 0.07 -9.26 16 8 C 0.51 9.86 7.83 -11.59 -0.09 9.77 16 9 O -0.53 -10.64 13.37 5.50 0.07 -10.56 16 10 N -0.57 -11.70 3.33 -170.73 -0.57 -12.27 16 11 C 0.10 1.91 5.97 -2.27 -0.01 1.89 16 12 C -0.12 -2.42 6.26 -24.32 -0.15 -2.57 16 13 C 0.25 5.86 0.85 -89.94 -0.08 5.79 16 14 O -0.58 -14.45 13.07 -35.23 -0.46 -14.91 16 15 C -0.54 -13.67 8.11 -34.44 -0.28 -13.95 16 16 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 17 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 18 N -0.90 -23.07 10.96 55.43 0.61 -22.46 16 19 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.10 2.27 5.38 -3.07 -0.02 2.26 16 24 C 0.10 1.12 3.23 -67.42 -0.22 0.90 16 25 H 0.11 1.28 7.09 -51.93 -0.37 0.91 16 26 C -0.15 -1.55 9.25 37.16 0.34 -1.21 16 27 C 0.06 0.57 6.36 37.31 0.24 0.80 16 28 O -0.38 -4.35 10.01 -35.23 -0.35 -4.70 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.17 2.54 3.98 -56.31 -0.22 2.31 16 33 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 34 H 0.08 1.47 6.35 -51.93 -0.33 1.14 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 38 H 0.38 9.70 7.23 45.56 0.33 10.03 16 39 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.07 1.82 7.81 -51.93 -0.41 1.42 16 41 H 0.07 1.82 7.99 -51.93 -0.42 1.41 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.69 7.24 -51.92 -0.38 0.31 16 45 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -27.72 363.02 -7.21 -34.93 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.38 Total: 13.47 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -0.20 Total: 14.17 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.41 Total: -43.48 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.67 Total: -39.43 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.72 -7.21 -34.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326528656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.490 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds