Wall clock time and date at job start Tue Mar 31 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.55443 * 2 1 4 4 C 1.52878 * 109.58520 * 240.01163 * 2 1 3 5 5 N 1.47152 * 108.60771 * 187.91843 * 4 2 1 6 6 C 1.34774 * 120.98234 * 230.49717 * 5 4 2 7 7 O 1.21350 * 120.00008 * 181.15037 * 6 5 4 8 8 C 1.49449 * 120.00079 * 1.15439 * 6 5 4 9 9 O 1.21348 * 119.99882 * 353.45500 * 8 6 5 10 10 N 1.34773 * 120.00094 * 173.45875 * 8 6 5 11 11 C 1.47428 * 125.64797 * 359.95628 * 10 8 6 12 12 C 1.55384 * 104.87421 * 204.16740 * 11 10 8 13 13 C 1.55158 * 101.36680 * 323.01776 * 12 11 10 14 14 O 1.42897 * 110.72036 * 277.04261 * 13 12 11 15 15 C 1.50700 * 110.71892 * 153.94693 * 13 12 11 16 16 H 1.07997 * 120.00254 * 2.43790 * 15 13 12 17 17 C 1.37877 * 119.99921 * 182.44008 * 15 13 12 18 18 N 1.31514 * 120.00059 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00191 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47010 * 89.99900 * 19 17 15 21 21 H 1.48501 * 109.47360 * 210.00048 * 19 17 15 22 22 H 1.48500 * 109.46899 * 330.00072 * 19 17 15 23 23 C 1.47020 * 125.65019 * 179.97438 * 10 8 6 24 24 C 1.47152 * 118.03396 * 50.22972 * 5 4 2 25 25 H 1.08999 * 109.68116 * 189.95090 * 24 5 4 26 26 C 1.52997 * 109.68433 * 69.43667 * 24 5 4 27 27 C 1.53293 * 108.38299 * 309.71437 * 24 5 4 28 28 O 1.42953 * 109.51360 * 120.12536 * 2 1 3 29 29 H 1.08999 * 109.47146 * 299.87324 * 1 2 3 30 30 H 1.09005 * 109.47051 * 59.87681 * 1 2 3 31 31 H 1.09001 * 109.46865 * 179.86856 * 1 2 3 32 32 H 1.09000 * 109.61994 * 68.10169 * 4 2 1 33 33 H 1.09000 * 109.51952 * 307.68544 * 4 2 1 34 34 H 1.08997 * 110.36900 * 323.00292 * 11 10 8 35 35 H 1.09003 * 110.36391 * 85.21859 * 11 10 8 36 36 H 1.09004 * 111.19056 * 204.98548 * 12 11 10 37 37 H 1.08997 * 111.02506 * 80.98156 * 12 11 10 38 38 H 0.96705 * 114.00394 * 177.56055 * 14 13 12 39 39 H 0.96999 * 119.99990 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.88285 * 59.48519 * 23 10 8 41 41 H 1.09000 * 110.01474 * 298.39600 * 23 10 8 42 42 H 1.09000 * 109.47398 * 60.00039 * 26 24 5 43 43 H 1.08999 * 109.47417 * 180.02562 * 26 24 5 44 44 H 1.09008 * 109.47059 * 299.99950 * 26 24 5 45 45 H 1.09001 * 109.51341 * 172.23327 * 27 24 5 46 46 H 1.09005 * 109.51426 * 292.32569 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0425 -0.7199 -1.2475 5 7 3.5012 -0.8760 -1.1336 6 6 4.3194 -0.5031 -2.1376 7 8 5.5183 -0.6592 -2.0331 8 6 3.7501 0.1025 -3.3796 9 8 2.5476 0.1501 -3.5353 10 7 4.5723 0.5957 -4.3268 11 6 6.0453 0.6035 -4.2667 12 6 6.4766 1.7676 -5.2012 13 6 5.4267 1.6522 -6.3379 14 8 5.8190 0.6612 -7.2897 15 6 5.2219 2.9844 -7.0117 16 1 5.8053 3.8400 -6.7053 17 6 4.2895 3.1111 -8.0195 18 7 3.5785 2.0694 -8.3923 19 14 4.0350 4.7627 -8.8544 20 1 4.9459 4.8727 -10.0220 21 1 2.6269 4.8739 -9.3129 22 1 4.3298 5.8545 -7.8919 23 6 4.1488 1.2155 -5.5909 24 6 4.0407 -1.4457 0.1113 25 1 5.1253 -1.3381 0.1245 26 6 3.6688 -2.9268 0.2039 27 6 3.4313 -0.6854 1.2947 28 8 2.0075 -0.6763 1.1654 29 1 -0.3633 0.5119 0.8911 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3633 -1.0277 -0.0024 32 1 1.8044 -0.1313 -2.1335 33 1 1.5728 -1.7008 -1.3207 34 1 6.3825 0.7912 -3.2473 35 1 6.4448 -0.3437 -4.6293 36 1 7.4853 1.6126 -5.5840 37 1 6.3969 2.7280 -4.6919 38 1 5.1784 0.5235 -8.0010 39 1 2.9228 2.1584 -9.1016 40 1 3.5238 2.0847 -5.3865 41 1 3.5955 0.4946 -6.1929 42 1 4.0878 -3.4607 -0.6491 43 1 4.0696 -3.3451 1.1272 44 1 2.5836 -3.0299 0.1997 45 1 3.7092 -1.1785 2.2263 46 1 3.8036 0.3390 1.3001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326528656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:26 Heat of formation + Delta-G solvation = -156.266905 kcal Electronic energy + Delta-G solvation = -29655.601579 eV Core-core repulsion = 25545.567603 eV Total energy + Delta-G solvation = -4110.033976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29822 -40.74707 -39.46625 -39.08210 -36.57040 -35.80548 -34.45651 -34.22205 -31.94719 -31.56857 -29.76868 -27.97061 -27.40140 -27.31060 -25.61010 -24.15265 -22.95613 -21.63815 -21.21934 -20.23072 -19.17363 -18.44400 -18.36748 -17.62883 -17.52925 -17.18380 -17.07982 -16.48730 -16.26346 -15.89153 -15.68546 -15.47538 -14.91935 -14.83560 -14.78851 -14.40933 -14.21000 -14.07386 -13.54589 -13.44628 -13.41569 -13.23942 -13.20950 -12.89356 -12.80690 -12.68782 -12.62192 -12.37014 -12.29468 -12.22971 -12.16249 -11.99250 -11.56605 -11.23416 -11.15657 -10.67243 -10.40749 -10.15170 -9.89654 -9.69462 -8.28304 -6.44176 0.21300 1.06649 1.42778 1.45137 1.54197 1.97438 2.18704 2.38367 2.71617 2.95959 3.00257 3.60052 3.73858 3.75337 3.95572 3.98998 4.00534 4.04928 4.13008 4.25711 4.30851 4.44394 4.54338 4.57190 4.63558 4.66377 4.68785 4.79677 4.84607 4.88826 4.94281 4.98552 5.04467 5.09131 5.19415 5.27013 5.27789 5.29422 5.43620 5.71898 5.84747 6.00517 6.10128 6.23718 6.51112 6.63877 6.80062 7.26685 7.34873 8.78168 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.003343 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.127265 B = 8373.608513 C = 9183.992509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.055 0.945 4 C 0.026 3.974 5 N -0.577 5.577 6 C 0.516 3.484 7 O -0.530 6.530 8 C 0.504 3.496 9 O -0.541 6.541 10 N -0.579 5.579 11 C 0.110 3.890 12 C -0.114 4.114 13 C 0.233 3.767 14 O -0.588 6.588 15 C -0.558 4.558 16 H 0.068 0.932 17 C 0.029 3.971 18 N -0.915 5.915 19 Si 0.964 3.036 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.268 1.268 23 C 0.117 3.883 24 C 0.092 3.908 25 H 0.106 0.894 26 C -0.148 4.148 27 C 0.057 3.943 28 O -0.381 6.381 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.378 0.622 39 H 0.272 0.728 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.139 0.861 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 -5.607 18.332 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.019 3.981 3 H 0.073 0.927 4 C -0.095 4.095 5 N -0.311 5.311 6 C 0.299 3.701 7 O -0.407 6.407 8 C 0.289 3.711 9 O -0.422 6.422 10 N -0.310 5.310 11 C -0.011 4.011 12 C -0.151 4.151 13 C 0.193 3.807 14 O -0.397 6.397 15 C -0.596 4.596 16 H 0.087 0.913 17 C -0.172 4.172 18 N -0.554 5.554 19 Si 0.789 3.211 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.005 4.005 24 C -0.010 4.010 25 H 0.124 0.876 26 C -0.206 4.206 27 C -0.020 4.020 28 O -0.300 6.300 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.156 0.844 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.053 -5.882 18.759 19.766 hybrid contribution -0.677 0.778 -1.554 1.865 sum -2.730 -5.104 17.205 18.152 Atomic orbital electron populations 1.21700 0.90505 1.03721 1.03578 1.22443 0.96963 0.94680 0.84007 0.92688 1.23784 0.77951 1.04135 1.03591 1.48190 1.08065 1.59467 1.15335 1.19794 0.86451 0.79669 0.84225 1.90687 1.14661 1.54935 1.80426 1.20182 0.86110 0.80133 0.84723 1.90316 1.14623 1.59316 1.77979 1.48753 1.09104 1.54764 1.18416 1.22678 0.77551 0.99387 1.01497 1.22909 0.99762 0.97813 0.94666 1.19716 0.88353 0.86489 0.86140 1.86108 1.51059 1.61316 1.41208 1.21809 1.21960 0.96011 1.19831 0.91347 1.25780 0.94240 1.00443 0.96711 1.69729 1.24396 1.31269 1.30046 0.85459 0.77241 0.79675 0.78705 1.20010 1.20908 1.19199 1.22802 1.00199 0.95432 0.82054 1.22305 1.00669 0.95225 0.82796 0.87563 1.21974 1.02520 0.92901 1.03179 1.23111 0.80680 1.00006 0.98184 1.87935 1.21288 1.77352 1.43455 0.90510 0.90194 0.91129 0.83972 0.90194 0.88207 0.91340 0.89050 0.89486 0.77188 0.91857 0.93040 0.93667 0.93550 0.88406 0.91966 0.84375 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.57 71.98 0.69 -1.65 16 2 C 0.08 1.65 3.39 30.55 0.10 1.76 16 3 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 4 C 0.03 0.68 5.25 86.21 0.45 1.13 16 5 N -0.58 -15.76 2.72 -795.90 -2.16 -17.92 16 6 C 0.52 17.34 7.72 87.27 0.67 18.01 16 7 O -0.53 -18.58 13.36 -3.25 -0.04 -18.63 16 8 C 0.50 19.77 7.83 87.27 0.68 20.45 16 9 O -0.54 -22.33 13.37 -3.24 -0.04 -22.37 16 10 N -0.58 -24.18 3.33 -812.42 -2.70 -26.88 16 11 C 0.11 4.15 5.97 87.02 0.52 4.67 16 12 C -0.11 -4.50 6.26 32.15 0.20 -4.30 16 13 C 0.23 11.21 0.85 -10.35 -0.01 11.20 16 14 O -0.59 -29.73 13.07 -148.98 -1.95 -31.68 16 15 C -0.56 -28.64 8.11 25.60 0.21 -28.43 16 16 H 0.07 3.42 7.77 -2.91 -0.02 3.40 16 17 C 0.03 1.50 5.28 84.65 0.45 1.94 16 18 N -0.92 -48.13 10.96 21.45 0.23 -47.89 16 19 Si 0.96 40.89 29.54 68.60 2.03 42.91 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 C 0.12 5.63 5.38 86.73 0.47 6.09 16 24 C 0.09 1.91 3.23 44.96 0.15 2.05 16 25 H 0.11 2.29 7.09 -2.39 -0.02 2.27 16 26 C -0.15 -2.60 9.25 71.98 0.67 -1.94 16 27 C 0.06 0.97 6.36 72.08 0.46 1.43 16 28 O -0.38 -7.75 10.01 -148.98 -1.49 -9.24 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.14 4.43 3.98 -71.69 -0.29 4.14 16 33 H 0.08 1.93 7.68 -2.39 -0.02 1.92 16 34 H 0.10 3.42 6.35 -2.39 -0.02 3.41 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.09 3.25 8.04 -2.39 -0.02 3.23 16 38 H 0.38 19.75 7.23 -74.05 -0.54 19.22 16 39 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 40 H 0.05 2.65 7.81 -2.39 -0.02 2.63 16 41 H 0.04 2.37 7.99 -2.39 -0.02 2.36 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.15 7.24 -2.38 -0.02 1.13 16 45 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -59.57 363.02 -0.24 -59.81 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: 0.19 Total: 39.47 kcal Atomic # 6 Polarization: 26.72 SS G_CDS: 5.70 Total: 32.42 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -4.63 Total: -92.69 kcal Atomic # 8 Polarization: -78.39 SS G_CDS: -3.53 Total: -81.91 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -59.57 -0.24 -59.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326528656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.462 kcal (2) G-P(sol) polarization free energy of solvation -59.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds