Wall clock time and date at job start Tue Mar 31 2020 04:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47404 * 2 1 4 4 C 1.46495 * 119.99986 * 270.00651 * 3 2 1 5 5 C 1.50705 * 109.47127 * 269.99271 * 4 3 2 6 6 H 1.08000 * 119.99719 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99990 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00393 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47206 * 89.99943 * 9 7 5 11 11 H 1.48499 * 109.47313 * 209.99996 * 9 7 5 12 12 H 1.48498 * 109.47170 * 330.00140 * 9 7 5 13 13 C 1.34776 * 119.99723 * 89.99544 * 3 2 1 14 14 O 1.21281 * 120.00051 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00186 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47452 * 179.97438 * 15 13 3 17 17 C 1.34224 * 117.00340 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00156 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.29966 * 39.99714 * 19 17 16 21 21 C 1.52922 * 109.13085 * 280.51509 * 19 17 16 22 22 C 1.53348 * 108.67252 * 189.04321 * 21 19 17 23 23 C 1.53063 * 108.42524 * 67.52954 * 22 21 19 24 24 C 1.50174 * 109.89116 * 311.09629 * 23 22 21 25 25 O 1.21289 * 118.24549 * 197.60568 * 24 23 22 26 26 N 1.33351 * 123.51123 * 17.58664 * 24 23 22 27 27 C 1.46495 * 117.94732 * 177.75013 * 26 24 23 28 28 H 1.09001 * 109.47197 * 299.99819 * 1 2 3 29 29 H 1.09000 * 109.47406 * 59.99352 * 1 2 3 30 30 H 1.09000 * 109.47471 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47197 * 240.00180 * 2 1 3 32 32 H 1.08994 * 109.47367 * 120.00248 * 2 1 3 33 33 H 1.08993 * 109.47634 * 29.99534 * 4 3 2 34 34 H 1.09004 * 109.47254 * 149.99547 * 4 3 2 35 35 H 0.96995 * 119.99751 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47633 * 59.99088 * 15 13 3 37 37 H 1.08999 * 109.46932 * 299.99056 * 15 13 3 38 38 H 1.09001 * 109.60229 * 308.79536 * 21 19 17 39 39 H 1.08994 * 109.60520 * 69.28653 * 21 19 17 40 40 H 1.09000 * 109.67044 * 307.79180 * 22 21 19 41 41 H 1.09005 * 109.70276 * 187.27863 * 22 21 19 42 42 H 1.09011 * 109.39931 * 190.96933 * 23 22 21 43 43 H 1.09003 * 109.33359 * 71.18689 * 23 22 21 44 44 H 1.08995 * 109.47287 * 270.02143 * 27 26 24 45 45 H 1.09003 * 109.47544 * 30.02516 * 27 26 24 46 46 H 1.08999 * 109.47035 * 150.02175 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1492 2.3906 -2.8774 8 7 3.3495 3.1275 -3.6171 9 14 5.9132 2.0966 -3.4171 10 1 5.9759 0.8761 -4.2607 11 1 6.3928 3.2642 -4.1994 12 1 6.7734 1.9156 -2.2202 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3060 2.4723 16 8 2.3071 2.1953 3.5760 17 6 2.1360 1.7117 4.8163 18 8 1.7358 0.5826 4.9746 19 6 2.4418 2.5772 6.0115 20 1 2.0999 3.5937 5.8171 21 6 3.9525 2.5887 6.2485 22 6 4.2340 3.2790 7.5885 23 6 3.6890 2.3943 8.7124 24 6 2.2800 1.9800 8.3988 25 8 1.5904 1.5597 9.3037 26 7 1.7462 2.0499 7.1788 27 6 0.3751 1.5660 7.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 3.6758 3.5186 -4.4425 36 1 2.6225 0.4186 2.5299 37 1 0.9443 1.0116 2.5302 38 1 4.3257 1.5650 6.2790 39 1 4.4447 3.1361 5.4446 40 1 3.7386 4.2496 7.6124 41 1 5.3085 3.4122 7.7147 42 1 3.7028 2.9504 9.6499 43 1 4.3145 1.5068 8.8086 44 1 0.3940 0.5064 6.7457 45 1 -0.1834 1.7073 7.9258 46 1 -0.1057 2.1243 6.1972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922997082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:58 Heat of formation + Delta-G solvation = -148.580784 kcal Electronic energy + Delta-G solvation = -28431.280541 eV Core-core repulsion = 24321.579860 eV Total energy + Delta-G solvation = -4109.700680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49557 -40.19749 -39.02678 -37.04599 -36.36992 -35.39306 -34.39291 -32.90128 -30.91744 -30.23772 -29.13717 -27.48219 -26.71577 -25.50667 -23.15747 -22.78850 -22.69948 -21.49262 -19.15536 -18.77050 -18.16375 -17.27626 -17.00980 -16.70031 -16.52063 -16.31597 -16.15715 -15.59066 -15.06815 -14.86287 -14.61229 -14.36677 -14.03893 -13.93181 -13.59188 -13.47910 -13.09431 -12.85167 -12.77336 -12.49852 -12.29375 -12.18748 -12.12037 -11.96584 -11.69985 -11.49449 -11.39364 -11.29311 -11.01487 -10.95562 -10.84378 -10.70346 -10.59411 -10.20144 -10.04845 -9.72164 -9.15810 -9.05781 -8.49972 -7.83121 -6.11030 -4.16236 1.80270 1.96921 2.38115 2.70079 3.15402 3.26072 3.33177 3.37308 3.70077 4.06745 4.10584 4.28120 4.32466 4.39318 4.58794 4.73299 4.76239 4.90163 5.02877 5.08324 5.09901 5.21951 5.23759 5.27996 5.30623 5.40588 5.42107 5.48574 5.51453 5.65889 5.67094 5.70440 5.89605 5.92683 6.12523 6.16308 6.38072 6.92089 6.99068 7.32710 7.38334 7.46207 7.78880 7.84657 8.14281 8.21539 8.76761 8.92032 9.49077 10.97160 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.002705 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.287915 B =10349.373645 C =11371.145399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.050 3.950 16 O -0.323 6.323 17 C 0.450 3.550 18 O -0.496 6.496 19 C 0.158 3.842 20 H 0.117 0.883 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.136 4.136 24 C 0.522 3.478 25 O -0.549 6.549 26 N -0.592 5.592 27 C 0.074 3.926 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -3.088 19.507 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.237 6.237 17 C 0.291 3.709 18 O -0.383 6.383 19 C 0.052 3.948 20 H 0.135 0.865 21 C -0.168 4.168 22 C -0.158 4.158 23 C -0.176 4.176 24 C 0.311 3.689 25 O -0.427 6.427 26 N -0.326 5.326 27 C -0.068 4.068 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.668 -2.918 19.791 20.182 hybrid contribution 0.819 -0.496 -0.708 1.191 sum -1.848 -3.414 19.083 19.474 Atomic orbital electron populations 1.22232 0.96478 1.01747 1.02419 1.21516 0.93788 0.83921 1.03058 1.48219 1.63696 1.13405 1.07135 1.19344 0.96524 0.93712 0.77503 1.21413 0.96826 1.32146 1.06434 0.92391 1.24930 0.97946 0.94813 0.96340 1.69927 1.35760 1.33210 1.14358 0.86482 0.84520 0.77717 0.78617 1.20623 1.21038 1.19860 1.19665 0.79828 0.87158 0.84235 1.90721 1.44515 1.17462 1.86707 1.23029 1.02808 0.92638 0.84280 1.86549 1.78208 1.44968 1.14004 1.23859 0.74943 0.87120 0.84976 1.90686 1.41530 1.19578 1.86502 1.20529 0.95582 0.97024 0.81644 0.86507 1.21943 0.91055 1.03652 1.00186 1.21672 1.02852 0.98927 0.92389 1.21725 0.92604 1.02277 1.01004 1.20178 0.89722 0.77620 0.81335 1.90729 1.61293 1.46828 1.43801 1.47029 1.15487 1.62819 1.07257 1.21857 0.81539 1.00809 1.02620 0.93173 0.91734 0.91856 0.89350 0.91789 0.94603 0.93662 0.92623 0.88549 0.88635 0.90022 0.87581 0.90329 0.89361 0.87713 0.87915 0.90899 0.89996 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.15 0.38 -1.76 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.83 2.46 -175.07 -0.43 -12.26 16 4 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.51 10.11 7.75 -10.99 -0.09 10.03 16 14 O -0.52 -12.66 16.08 -14.10 -0.23 -12.88 16 15 C 0.05 0.74 4.50 36.00 0.16 0.90 16 16 O -0.32 -4.74 9.75 -45.89 -0.45 -5.19 16 17 C 0.45 5.56 6.43 36.01 0.23 5.79 16 18 O -0.50 -6.95 14.12 -18.75 -0.26 -7.21 16 19 C 0.16 1.48 3.20 -69.53 -0.22 1.25 16 20 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.13 -0.95 5.28 -26.59 -0.14 -1.09 16 22 C -0.12 -0.64 6.03 -26.52 -0.16 -0.80 16 23 C -0.14 -0.94 6.03 -28.10 -0.17 -1.11 16 24 C 0.52 5.71 7.47 -11.87 -0.09 5.62 16 25 O -0.55 -8.01 16.18 5.55 0.09 -7.92 16 26 N -0.59 -6.22 2.96 -176.51 -0.52 -6.74 16 27 C 0.07 0.79 8.70 59.84 0.52 1.31 16 28 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 33 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 36 H 0.10 1.30 7.39 -51.93 -0.38 0.91 16 37 H 0.10 1.23 7.18 -51.93 -0.37 0.86 16 38 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.87 6.97 -51.93 -0.36 0.51 16 45 H 0.08 0.89 7.13 -51.93 -0.37 0.52 16 46 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -35.56 380.25 -7.57 -43.13 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.17 Total: -2.40 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -0.04 Total: 14.61 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.22 Total: -44.14 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.85 Total: -33.20 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.56 -7.57 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922997082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.452 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds