Wall clock time and date at job start Tue Mar 31 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47404 * 2 1 4 4 C 1.46495 * 119.99986 * 270.00651 * 3 2 1 5 5 C 1.50705 * 109.47127 * 269.99271 * 4 3 2 6 6 H 1.08000 * 119.99719 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99990 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00393 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47206 * 89.99943 * 9 7 5 11 11 H 1.48499 * 109.47313 * 209.99996 * 9 7 5 12 12 H 1.48498 * 109.47170 * 330.00140 * 9 7 5 13 13 C 1.34776 * 119.99723 * 89.99544 * 3 2 1 14 14 O 1.21281 * 120.00051 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00186 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47452 * 179.97438 * 15 13 3 17 17 C 1.34224 * 117.00340 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00156 * 180.02562 * 17 16 15 20 20 H 1.09002 * 109.29966 * 39.99714 * 19 17 16 21 21 C 1.52922 * 109.13085 * 280.51509 * 19 17 16 22 22 C 1.53348 * 108.67252 * 189.04321 * 21 19 17 23 23 C 1.53063 * 108.42524 * 67.52954 * 22 21 19 24 24 C 1.50174 * 109.89116 * 311.09629 * 23 22 21 25 25 O 1.21289 * 118.24549 * 197.60568 * 24 23 22 26 26 N 1.33351 * 123.51123 * 17.58664 * 24 23 22 27 27 C 1.46495 * 117.94732 * 177.75013 * 26 24 23 28 28 H 1.09001 * 109.47197 * 299.99819 * 1 2 3 29 29 H 1.09000 * 109.47406 * 59.99352 * 1 2 3 30 30 H 1.09000 * 109.47471 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47197 * 240.00180 * 2 1 3 32 32 H 1.08994 * 109.47367 * 120.00248 * 2 1 3 33 33 H 1.08993 * 109.47634 * 29.99534 * 4 3 2 34 34 H 1.09004 * 109.47254 * 149.99547 * 4 3 2 35 35 H 0.96995 * 119.99751 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47633 * 59.99088 * 15 13 3 37 37 H 1.08999 * 109.46932 * 299.99056 * 15 13 3 38 38 H 1.09001 * 109.60229 * 308.79536 * 21 19 17 39 39 H 1.08994 * 109.60520 * 69.28653 * 21 19 17 40 40 H 1.09000 * 109.67044 * 307.79180 * 22 21 19 41 41 H 1.09005 * 109.70276 * 187.27863 * 22 21 19 42 42 H 1.09011 * 109.39931 * 190.96933 * 23 22 21 43 43 H 1.09003 * 109.33359 * 71.18689 * 23 22 21 44 44 H 1.08995 * 109.47287 * 270.02143 * 27 26 24 45 45 H 1.09003 * 109.47544 * 30.02516 * 27 26 24 46 46 H 1.08999 * 109.47035 * 150.02175 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1492 2.3906 -2.8774 8 7 3.3495 3.1275 -3.6171 9 14 5.9132 2.0966 -3.4171 10 1 5.9759 0.8761 -4.2607 11 1 6.3928 3.2642 -4.1994 12 1 6.7734 1.9156 -2.2202 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3060 2.4723 16 8 2.3071 2.1953 3.5760 17 6 2.1360 1.7117 4.8163 18 8 1.7358 0.5826 4.9746 19 6 2.4418 2.5772 6.0115 20 1 2.0999 3.5937 5.8171 21 6 3.9525 2.5887 6.2485 22 6 4.2340 3.2790 7.5885 23 6 3.6890 2.3943 8.7124 24 6 2.2800 1.9800 8.3988 25 8 1.5904 1.5597 9.3037 26 7 1.7462 2.0499 7.1788 27 6 0.3751 1.5660 7.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 3.6758 3.5186 -4.4425 36 1 2.6225 0.4186 2.5299 37 1 0.9443 1.0116 2.5302 38 1 4.3257 1.5650 6.2790 39 1 4.4447 3.1361 5.4446 40 1 3.7386 4.2496 7.6124 41 1 5.3085 3.4122 7.7147 42 1 3.7028 2.9504 9.6499 43 1 4.3145 1.5068 8.8086 44 1 0.3940 0.5064 6.7457 45 1 -0.1834 1.7073 7.9258 46 1 -0.1057 2.1243 6.1972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922997082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:56 Heat of formation + Delta-G solvation = -171.157549 kcal Electronic energy + Delta-G solvation = -28432.259543 eV Core-core repulsion = 24321.579860 eV Total energy + Delta-G solvation = -4110.679682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.172 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.41059 -41.25547 -40.47438 -38.05946 -37.32184 -36.97098 -35.07272 -34.93161 -31.90227 -31.58400 -30.44636 -28.47159 -28.19077 -26.36631 -24.87112 -24.16289 -23.33985 -22.52217 -20.34906 -19.76766 -19.22235 -18.63427 -18.29969 -17.96193 -17.64279 -17.52084 -17.30182 -16.97957 -16.36714 -16.10923 -15.82971 -15.34285 -15.00649 -14.85158 -14.73303 -14.50485 -14.45784 -14.01077 -13.94074 -13.65257 -13.56907 -13.29639 -13.24075 -13.09155 -12.99392 -12.71899 -12.67594 -12.50224 -12.23096 -12.08618 -12.05675 -11.87308 -11.81416 -11.75658 -11.71362 -10.89081 -10.72583 -10.63539 -9.99057 -9.54336 -8.22522 -6.37026 0.84052 0.97476 1.38518 1.41091 1.50885 1.53884 1.62275 1.85657 2.29928 2.43467 3.07856 3.31640 3.41428 3.45393 3.48476 3.79219 3.86447 3.94661 3.98202 4.13789 4.14722 4.25266 4.37210 4.48187 4.53582 4.57993 4.69003 4.79279 4.82051 4.87772 4.94107 4.95765 4.97621 5.02802 5.13235 5.17726 5.21840 5.25281 5.35398 5.54401 5.79705 6.04602 6.19475 6.42364 6.62277 6.72492 6.96519 7.21572 7.37197 8.84911 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.002705 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.287915 B =10349.373645 C =11371.145399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.500 3.500 14 O -0.574 6.574 15 C 0.062 3.938 16 O -0.338 6.338 17 C 0.454 3.546 18 O -0.513 6.513 19 C 0.159 3.841 20 H 0.137 0.863 21 C -0.130 4.130 22 C -0.111 4.111 23 C -0.131 4.131 24 C 0.516 3.484 25 O -0.593 6.593 26 N -0.593 5.593 27 C 0.075 3.925 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.028 0.972 34 H 0.001 0.999 35 H 0.267 0.733 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.113 0.887 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -4.050 20.646 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.287 3.713 14 O -0.454 6.454 15 C -0.014 4.014 16 O -0.253 6.253 17 C 0.296 3.704 18 O -0.401 6.401 19 C 0.054 3.946 20 H 0.154 0.846 21 C -0.168 4.168 22 C -0.148 4.148 23 C -0.170 4.170 24 C 0.307 3.693 25 O -0.474 6.474 26 N -0.326 5.326 27 C -0.068 4.068 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.396 -3.924 20.931 21.341 hybrid contribution 0.351 -0.218 -1.053 1.132 sum -1.045 -4.142 19.878 20.331 Atomic orbital electron populations 1.22176 0.94397 1.03720 1.01865 1.21851 0.95487 0.81065 1.04373 1.48203 1.63605 1.15198 1.05757 1.18790 0.95561 0.91725 0.79753 1.21701 0.97808 1.32121 1.06642 0.92638 1.25836 1.02340 0.94421 0.96423 1.70046 1.37799 1.34072 1.14834 0.85418 0.79057 0.78100 0.78259 1.19001 1.20740 1.19575 1.20499 0.78399 0.86670 0.85738 1.90685 1.46988 1.20008 1.87702 1.22842 1.04715 0.92027 0.81835 1.86554 1.78655 1.45382 1.14703 1.24415 0.74059 0.87225 0.84669 1.90684 1.42415 1.20481 1.86495 1.20797 0.97103 0.96931 0.79805 0.84551 1.22018 0.89146 1.03911 1.01683 1.21677 1.04384 0.98535 0.90251 1.21787 0.89839 1.03213 1.02204 1.20994 0.90975 0.76629 0.80729 1.90708 1.62731 1.48908 1.45042 1.47152 1.15368 1.62428 1.07675 1.21793 0.82146 1.00138 1.02707 0.92339 0.93716 0.88544 0.90090 0.88401 0.95404 0.98077 0.92376 0.86458 0.86093 0.90420 0.86901 0.89407 0.86898 0.86416 0.86846 0.92371 0.90590 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.05 16 2 C 0.09 2.67 5.93 86.38 0.51 3.19 16 3 N -0.60 -23.96 2.46 -826.18 -2.03 -25.99 16 4 C 0.26 13.65 5.16 85.64 0.44 14.09 16 5 C -0.54 -30.38 9.39 25.60 0.24 -30.14 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.50 5.46 84.65 0.46 0.97 16 8 N -0.93 -54.89 13.29 21.44 0.28 -54.61 16 9 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.50 19.96 7.75 87.66 0.68 20.64 16 14 O -0.57 -28.88 16.08 15.77 0.25 -28.63 16 15 C 0.06 1.75 4.50 71.23 0.32 2.07 16 16 O -0.34 -9.43 9.75 -45.01 -0.44 -9.87 16 17 C 0.45 10.44 6.43 71.24 0.46 10.89 16 18 O -0.51 -13.49 14.12 21.96 0.31 -13.18 16 19 C 0.16 2.66 3.20 44.36 0.14 2.80 16 20 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 21 C -0.13 -1.55 5.28 30.69 0.16 -1.39 16 22 C -0.11 -0.82 6.03 30.73 0.19 -0.63 16 23 C -0.13 -1.48 6.03 29.70 0.18 -1.30 16 24 C 0.52 10.68 7.47 87.71 0.66 11.34 16 25 O -0.59 -17.23 16.18 -3.06 -0.05 -17.28 16 26 N -0.59 -11.73 2.96 -831.54 -2.46 -14.19 16 27 C 0.07 1.56 8.70 127.77 1.11 2.68 16 28 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 32 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 33 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 34 H 0.00 0.07 7.42 -2.38 -0.02 0.05 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.12 2.82 7.39 -2.39 -0.02 2.80 16 37 H 0.12 2.78 7.18 -2.39 -0.02 2.77 16 38 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 0.54 8.13 -2.39 -0.02 0.52 16 41 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.38 6.97 -2.39 -0.02 1.37 16 45 H 0.08 1.67 7.13 -2.39 -0.02 1.65 16 46 H 0.08 1.38 7.75 -2.39 -0.02 1.36 16 Total: -1.00 -80.67 380.25 5.16 -75.51 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.98 Total: 10.38 kcal Atomic # 6 Polarization: 25.87 SS G_CDS: 6.29 Total: 32.15 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.20 Total: -94.79 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: 0.08 Total: -68.96 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -80.67 5.16 -75.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922997082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.648 kcal (2) G-P(sol) polarization free energy of solvation -80.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds