Wall clock time and date at job start Tue Mar 31 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00687 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00633 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00348 * 3 2 1 7 7 C 1.38950 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99459 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47209 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47016 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.46943 * 180.02562 * 16 15 14 18 18 C 1.34781 * 120.00080 * 179.97438 * 17 16 15 19 19 O 1.21278 * 120.00045 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99772 * 179.97438 * 18 17 16 21 21 H 1.09000 * 109.60336 * 60.00698 * 20 18 17 22 22 C 1.53348 * 109.60210 * 180.32455 * 20 18 17 23 23 C 1.53065 * 108.42766 * 187.29254 * 22 20 18 24 24 C 1.50176 * 109.88766 * 311.10063 * 23 22 20 25 25 O 1.21286 * 118.24551 * 197.60825 * 24 23 22 26 26 N 1.33349 * 123.51470 * 17.57910 * 24 23 22 27 27 C 1.45823 * 124.16280 * 357.96051 * 26 24 23 28 28 H 0.97009 * 120.00065 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.00899 * 111.00252 * 303.95531 * 13 12 10 33 33 H 1.08998 * 109.47247 * 300.00237 * 14 13 12 34 34 H 1.09009 * 109.47056 * 60.00110 * 14 13 12 35 35 H 1.09006 * 109.47162 * 300.00040 * 15 14 13 36 36 H 1.09001 * 109.47081 * 59.99871 * 15 14 13 37 37 H 1.08994 * 109.47281 * 299.99710 * 16 15 14 38 38 H 1.08996 * 109.47578 * 60.00382 * 16 15 14 39 39 H 0.97000 * 120.00099 * 359.97438 * 17 16 15 40 40 H 1.09004 * 109.67551 * 307.02655 * 22 20 18 41 41 H 1.08996 * 109.67300 * 67.51899 * 22 20 18 42 42 H 1.08997 * 109.40494 * 71.22657 * 23 22 20 43 43 H 1.08998 * 109.40236 * 191.05769 * 23 22 20 44 44 H 0.96996 * 117.95245 * 177.77805 * 26 24 23 45 45 H 1.08994 * 109.18179 * 258.53565 * 27 26 24 46 46 H 1.09002 * 109.45542 * 139.13373 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6527 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3705 -0.0011 11 8 3.4471 -3.4210 0.0044 12 6 5.5607 -2.3706 -0.0011 13 7 6.0503 -3.7556 0.0055 14 6 7.5187 -3.7948 0.0051 15 6 7.9901 -5.2504 0.0127 16 6 9.5195 -5.2912 0.0129 17 7 9.9708 -6.6849 0.0195 18 6 11.2889 -6.9665 0.0204 19 8 12.1013 -6.0661 0.0161 20 6 11.7530 -8.4002 0.0278 21 1 11.3769 -8.9110 -0.8586 22 6 13.2858 -8.4447 0.0354 23 6 13.7286 -9.8992 -0.1415 24 6 12.9786 -10.7814 0.8148 25 8 13.4205 -11.8878 1.0420 26 7 11.8532 -10.4133 1.4280 27 6 11.2332 -9.1014 1.2834 28 1 -0.4851 0.8401 0.0004 29 1 3.8647 -0.3633 -0.0007 30 1 5.9239 -1.8610 -0.8935 31 1 5.9240 -1.8525 0.8864 32 1 5.6747 -4.2681 0.7893 33 1 7.8953 -3.2952 -0.8875 34 1 7.8961 -3.2864 0.8925 35 1 7.6135 -5.7496 0.9056 36 1 7.6128 -5.7591 -0.8744 37 1 9.8964 -4.7919 -0.8797 38 1 9.8965 -4.7827 0.9002 39 1 9.3210 -7.4051 0.0233 40 1 13.6746 -7.8404 -0.7843 41 1 13.6594 -8.0596 0.9842 42 1 13.5249 -10.2179 -1.1638 43 1 14.7974 -9.9789 0.0564 44 1 11.4174 -11.0598 2.0050 45 1 11.4691 -8.4954 2.1581 46 1 10.1518 -9.2169 1.2099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161622557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:25 Heat of formation + Delta-G solvation = -117.253891 kcal Electronic energy + Delta-G solvation = -26132.408337 eV Core-core repulsion = 22056.358844 eV Total energy + Delta-G solvation = -4076.049493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19758 -39.88820 -38.55873 -37.01886 -36.55561 -35.11002 -33.94773 -33.58170 -31.97059 -31.64823 -30.35095 -27.37571 -25.46886 -24.99852 -23.78131 -22.93282 -21.89951 -21.09433 -19.72768 -19.40237 -18.43283 -18.22465 -17.22000 -16.81916 -16.44110 -16.35312 -16.01640 -15.75756 -15.54626 -15.08381 -14.82743 -14.71258 -14.49851 -14.19596 -14.17754 -13.87257 -13.59185 -13.23235 -12.97113 -12.52049 -12.45613 -12.42150 -12.19310 -12.01686 -11.91992 -11.74844 -11.63647 -11.60825 -11.24053 -11.09888 -10.62600 -10.36747 -10.27932 -10.00937 -9.72331 -9.60957 -9.55615 -8.65343 -8.25250 -8.20143 -6.34499 -3.86171 2.03868 2.11856 2.53984 2.72645 2.99600 3.04379 3.12690 3.69651 3.83382 3.90158 3.98478 4.00249 4.07445 4.10784 4.52670 4.59165 4.65066 4.67390 4.71284 4.78680 4.89292 4.94864 5.00481 5.18105 5.20892 5.26265 5.34644 5.36294 5.46897 5.54101 5.57121 5.74944 5.79904 5.85759 5.90444 5.97635 6.16880 6.70452 6.95242 6.99763 7.48345 7.54549 7.65131 7.67873 8.10706 8.55975 8.91285 9.38748 9.78531 10.78526 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.038768 B = 0.001447 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.069169 B =19346.992768 C =19906.588376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.062 3.938 15 C -0.130 4.130 16 C 0.119 3.881 17 N -0.727 5.727 18 C 0.522 3.478 19 O -0.531 6.531 20 C -0.127 4.127 21 H 0.110 0.890 22 C -0.104 4.104 23 C -0.136 4.136 24 C 0.519 3.481 25 O -0.556 6.556 26 N -0.719 5.719 27 C 0.120 3.880 28 H 0.274 0.726 29 H 0.371 0.629 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.351 0.649 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.402 0.598 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.403 0.597 45 H 0.074 0.926 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.476 -14.154 1.128 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.168 4.168 16 C -0.005 4.005 17 N -0.379 5.379 18 C 0.306 3.694 19 O -0.406 6.406 20 C -0.148 4.148 21 H 0.128 0.872 22 C -0.142 4.142 23 C -0.176 4.176 24 C 0.306 3.694 25 O -0.434 6.434 26 N -0.372 5.372 27 C -0.005 4.005 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.170 0.830 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.237 0.763 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.239 0.761 45 H 0.092 0.908 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 26.724 -14.544 0.417 30.428 hybrid contribution 0.036 1.286 1.103 1.694 sum 26.760 -13.258 1.520 29.903 Atomic orbital electron populations 1.69620 1.05660 1.27538 1.49218 1.25039 0.95491 0.97992 0.97577 0.86667 0.79735 0.84006 0.78932 1.19568 1.20165 1.19538 1.19435 0.79243 0.96653 1.48209 0.86278 1.42204 1.07552 1.06173 1.66977 1.19702 0.88187 0.84571 0.84081 1.90563 1.69444 1.30946 1.53830 1.21704 0.95067 0.90307 1.01396 1.60030 1.05831 1.13071 1.51274 1.21831 0.88686 0.95394 1.00870 1.21750 0.93143 0.98130 1.03791 1.21367 0.94492 0.81850 1.02745 1.46062 1.07054 1.09436 1.75343 1.20207 0.82402 0.90500 0.76261 1.90747 1.53284 1.47874 1.48730 1.21673 0.98845 0.93895 1.00417 0.87211 1.21507 0.92197 0.95523 1.05013 1.21700 1.01808 0.94151 0.99904 1.20278 0.80413 0.87683 0.81015 1.90789 1.66409 1.22428 1.63762 1.45423 1.26138 1.16131 1.49491 1.21307 0.97931 0.83975 0.97307 0.91579 0.79661 0.89403 0.93690 0.83000 0.90722 0.95195 0.91148 0.89998 0.91050 0.91257 0.76314 0.89152 0.90254 0.87840 0.87493 0.76078 0.90770 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.96 55.50 0.77 -24.64 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 8 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 9 N -0.59 -13.75 5.09 -10.96 -0.06 -13.81 16 10 C 0.45 9.89 7.82 -10.98 -0.09 9.81 16 11 O -0.57 -14.82 15.78 5.54 0.09 -14.73 16 12 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 13 N -0.67 -9.35 6.13 -115.05 -0.70 -10.06 16 14 C 0.06 0.60 5.69 -3.82 -0.02 0.58 16 15 C -0.13 -0.93 5.59 -26.73 -0.15 -1.08 16 16 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 17 N -0.73 -3.73 5.46 -60.30 -0.33 -4.06 16 18 C 0.52 3.44 7.14 -10.98 -0.08 3.36 16 19 O -0.53 -5.72 15.89 5.56 0.09 -5.63 16 20 C -0.13 -0.49 2.59 -91.64 -0.24 -0.73 16 21 H 0.11 0.28 8.12 -51.93 -0.42 -0.15 16 22 C -0.10 -0.49 4.71 -26.52 -0.13 -0.61 16 23 C -0.14 -0.64 6.03 -28.10 -0.17 -0.81 16 24 C 0.52 3.79 7.71 -11.87 -0.09 3.70 16 25 O -0.56 -6.57 17.78 5.55 0.10 -6.47 16 26 N -0.72 -3.39 5.45 -61.34 -0.33 -3.72 16 27 C 0.12 0.34 6.34 -4.45 -0.03 0.32 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.35 5.04 8.43 -39.29 -0.33 4.70 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.03 0.27 8.14 -51.92 -0.42 -0.16 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 1.06 8.12 -40.82 -0.33 0.73 16 40 H 0.09 0.46 7.90 -51.93 -0.41 0.05 16 41 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.40 1.64 8.80 -40.82 -0.36 1.28 16 45 H 0.07 0.24 8.11 -51.93 -0.42 -0.18 16 46 H 0.09 0.06 7.85 -51.93 -0.41 -0.34 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -37.46 383.47 -7.72 -45.19 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.12 Total: 9.49 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -1.29 Total: 8.36 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.65 Total: -56.29 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.27 Total: -26.84 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.46 -7.72 -45.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161622557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.068 kcal (2) G-P(sol) polarization free energy of solvation -37.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds