Wall clock time and date at job start Tue Mar 31 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00687 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00633 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00348 * 3 2 1 7 7 C 1.38950 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99459 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47209 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47016 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.46943 * 180.02562 * 16 15 14 18 18 C 1.34781 * 120.00080 * 179.97438 * 17 16 15 19 19 O 1.21278 * 120.00045 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99772 * 179.97438 * 18 17 16 21 21 H 1.09000 * 109.60336 * 60.00698 * 20 18 17 22 22 C 1.53348 * 109.60210 * 180.32455 * 20 18 17 23 23 C 1.53065 * 108.42766 * 187.29254 * 22 20 18 24 24 C 1.50176 * 109.88766 * 311.10063 * 23 22 20 25 25 O 1.21286 * 118.24551 * 197.60825 * 24 23 22 26 26 N 1.33349 * 123.51470 * 17.57910 * 24 23 22 27 27 C 1.45823 * 124.16280 * 357.96051 * 26 24 23 28 28 H 0.97009 * 120.00065 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.00899 * 111.00252 * 303.95531 * 13 12 10 33 33 H 1.08998 * 109.47247 * 300.00237 * 14 13 12 34 34 H 1.09009 * 109.47056 * 60.00110 * 14 13 12 35 35 H 1.09006 * 109.47162 * 300.00040 * 15 14 13 36 36 H 1.09001 * 109.47081 * 59.99871 * 15 14 13 37 37 H 1.08994 * 109.47281 * 299.99710 * 16 15 14 38 38 H 1.08996 * 109.47578 * 60.00382 * 16 15 14 39 39 H 0.97000 * 120.00099 * 359.97438 * 17 16 15 40 40 H 1.09004 * 109.67551 * 307.02655 * 22 20 18 41 41 H 1.08996 * 109.67300 * 67.51899 * 22 20 18 42 42 H 1.08997 * 109.40494 * 71.22657 * 23 22 20 43 43 H 1.08998 * 109.40236 * 191.05769 * 23 22 20 44 44 H 0.96996 * 117.95245 * 177.77805 * 26 24 23 45 45 H 1.08994 * 109.18179 * 258.53565 * 27 26 24 46 46 H 1.09002 * 109.45542 * 139.13373 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6527 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3705 -0.0011 11 8 3.4471 -3.4210 0.0044 12 6 5.5607 -2.3706 -0.0011 13 7 6.0503 -3.7556 0.0055 14 6 7.5187 -3.7948 0.0051 15 6 7.9901 -5.2504 0.0127 16 6 9.5195 -5.2912 0.0129 17 7 9.9708 -6.6849 0.0195 18 6 11.2889 -6.9665 0.0204 19 8 12.1013 -6.0661 0.0161 20 6 11.7530 -8.4002 0.0278 21 1 11.3769 -8.9110 -0.8586 22 6 13.2858 -8.4447 0.0354 23 6 13.7286 -9.8992 -0.1415 24 6 12.9786 -10.7814 0.8148 25 8 13.4205 -11.8878 1.0420 26 7 11.8532 -10.4133 1.4280 27 6 11.2332 -9.1014 1.2834 28 1 -0.4851 0.8401 0.0004 29 1 3.8647 -0.3633 -0.0007 30 1 5.9239 -1.8610 -0.8935 31 1 5.9240 -1.8525 0.8864 32 1 5.6747 -4.2681 0.7893 33 1 7.8953 -3.2952 -0.8875 34 1 7.8961 -3.2864 0.8925 35 1 7.6135 -5.7496 0.9056 36 1 7.6128 -5.7591 -0.8744 37 1 9.8964 -4.7919 -0.8797 38 1 9.8965 -4.7827 0.9002 39 1 9.3210 -7.4051 0.0233 40 1 13.6746 -7.8404 -0.7843 41 1 13.6594 -8.0596 0.9842 42 1 13.5249 -10.2179 -1.1638 43 1 14.7974 -9.9789 0.0564 44 1 11.4174 -11.0598 2.0050 45 1 11.4691 -8.4954 2.1581 46 1 10.1518 -9.2169 1.2099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161622557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:25 Heat of formation + Delta-G solvation = -151.126858 kcal Electronic energy + Delta-G solvation = -26133.877179 eV Core-core repulsion = 22056.358844 eV Total energy + Delta-G solvation = -4077.518335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67898 -40.46919 -40.27937 -37.75126 -37.23682 -36.13984 -35.66535 -33.99208 -33.75003 -32.63833 -30.90577 -28.63249 -26.45567 -25.70781 -24.77237 -23.70906 -22.54138 -21.62313 -21.26309 -20.29081 -20.06355 -18.75205 -17.88281 -17.63185 -17.32512 -17.19368 -16.82609 -16.70355 -16.46015 -16.24091 -15.71041 -15.68366 -15.17258 -15.08431 -14.96230 -14.77042 -14.62809 -14.40141 -14.22556 -14.06705 -13.41048 -13.21203 -12.98356 -12.91133 -12.81477 -12.65382 -12.41010 -12.37521 -12.23497 -12.00237 -11.97072 -11.79690 -11.50577 -10.93990 -10.85932 -10.43180 -10.24246 -10.17341 -10.07461 -9.30807 -8.40830 -6.01849 1.31129 1.36708 1.45449 1.53866 1.58741 1.96542 2.07488 2.23728 2.30915 2.77181 3.15752 3.42913 3.49797 3.53165 3.67205 3.73068 4.04390 4.14679 4.17549 4.21616 4.25006 4.32405 4.38655 4.46201 4.53899 4.58383 4.62579 4.71898 4.76138 4.83289 4.87593 5.00596 5.16975 5.21814 5.26161 5.46246 5.53256 5.77662 5.91454 6.06361 6.25097 6.42313 6.54187 6.60380 6.88664 7.15382 7.22575 7.40594 7.97018 8.76724 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.038768 B = 0.001447 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.069169 B =19346.992768 C =19906.588376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.688 5.688 14 C 0.062 3.938 15 C -0.118 4.118 16 C 0.126 3.874 17 N -0.716 5.716 18 C 0.524 3.476 19 O -0.576 6.576 20 C -0.119 4.119 21 H 0.131 0.869 22 C -0.100 4.100 23 C -0.128 4.128 24 C 0.514 3.486 25 O -0.609 6.609 26 N -0.709 5.709 27 C 0.120 3.880 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.346 0.654 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.417 0.583 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.407 0.593 45 H 0.074 0.926 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.703 -12.704 1.064 31.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.074 0.926 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.321 5.321 14 C -0.067 4.067 15 C -0.156 4.156 16 C 0.002 3.998 17 N -0.368 5.368 18 C 0.310 3.690 19 O -0.455 6.455 20 C -0.141 4.141 21 H 0.149 0.851 22 C -0.138 4.138 23 C -0.168 4.168 24 C 0.303 3.697 25 O -0.492 6.492 26 N -0.360 5.360 27 C -0.004 4.004 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.254 0.746 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.138 0.862 43 H 0.125 0.875 44 H 0.244 0.756 45 H 0.093 0.907 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 28.937 -13.098 0.359 31.765 hybrid contribution -0.731 0.726 1.125 1.526 sum 28.206 -12.372 1.484 30.836 Atomic orbital electron populations 1.69804 1.08169 1.29244 1.50271 1.26109 0.96446 1.02705 0.96025 0.85365 0.79505 0.76719 0.79921 1.18217 1.20119 1.15362 1.19020 0.81584 0.94936 1.50430 0.92647 1.42040 1.05792 1.07687 1.67770 1.21039 0.91108 0.83265 0.81055 1.90540 1.71449 1.32774 1.55159 1.21628 0.89346 0.92090 1.04019 1.60037 1.08503 1.12087 1.51438 1.21927 0.85857 0.97158 1.01762 1.21607 0.93215 0.96731 1.04035 1.21198 0.93946 0.82550 1.02144 1.45958 1.07054 1.09425 1.74361 1.20563 0.82252 0.91014 0.75190 1.90736 1.54461 1.49343 1.50933 1.21639 0.98183 0.92388 1.01853 0.85088 1.21436 0.92936 0.95162 1.04294 1.21669 1.01527 0.93530 1.00064 1.20707 0.80744 0.87190 0.81096 1.90766 1.67941 1.24676 1.65769 1.45413 1.25289 1.16808 1.48493 1.21466 0.99425 0.82777 0.96781 0.91158 0.77450 0.86864 0.90543 0.83575 0.90158 0.93821 0.90317 0.90368 0.91910 0.91714 0.74597 0.89518 0.91363 0.86241 0.87457 0.75644 0.90744 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.96 21.66 0.30 -55.39 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 3 Si 0.96 37.93 27.74 68.60 1.90 39.84 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 7 C -0.33 -19.08 10.16 84.04 0.85 -18.22 16 8 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.12 5.09 -306.98 -1.56 -28.68 16 10 C 0.45 19.43 7.82 87.66 0.69 20.11 16 11 O -0.61 -33.04 15.78 -3.08 -0.05 -33.09 16 12 C 0.06 1.73 6.17 85.56 0.53 2.25 16 13 N -0.69 -17.57 6.13 -517.92 -3.17 -20.75 16 14 C 0.06 1.00 5.69 86.30 0.49 1.49 16 15 C -0.12 -1.35 5.59 30.59 0.17 -1.18 16 16 C 0.13 1.37 5.67 86.38 0.49 1.86 16 17 N -0.72 -5.45 5.46 -463.07 -2.53 -7.98 16 18 C 0.52 5.84 7.14 87.66 0.63 6.47 16 19 O -0.58 -11.80 15.89 -3.02 -0.05 -11.85 16 20 C -0.12 -0.65 2.59 -11.45 -0.03 -0.68 16 21 H 0.13 0.22 8.12 -2.39 -0.02 0.20 16 22 C -0.10 -0.82 4.71 30.73 0.14 -0.67 16 23 C -0.13 -1.07 6.03 29.71 0.18 -0.89 16 24 C 0.51 7.14 7.71 87.71 0.68 7.81 16 25 O -0.61 -14.58 17.78 -3.05 -0.05 -14.63 16 26 N -0.71 -5.55 5.45 -467.18 -2.55 -8.10 16 27 C 0.12 0.38 6.34 86.48 0.55 0.93 16 28 H 0.28 15.19 8.31 -92.70 -0.77 14.42 16 29 H 0.39 14.67 5.76 -92.71 -0.53 14.14 16 30 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.35 9.37 8.43 -89.69 -0.76 8.61 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.42 0.80 8.12 -92.71 -0.75 0.04 16 40 H 0.09 0.81 7.90 -2.39 -0.02 0.79 16 41 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 42 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.41 2.74 8.80 -92.71 -0.82 1.93 16 45 H 0.07 0.30 8.11 -2.39 -0.02 0.28 16 46 H 0.12 -0.27 7.85 -2.39 -0.02 -0.29 16 Total: -1.00 -88.17 383.47 -3.80 -91.97 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -1.88 Total: 29.69 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.83 Total: 18.97 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -9.51 Total: -120.90 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -0.15 Total: -59.57 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.90 Total: 39.84 kcal Total: -88.17 -3.80 -91.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161622557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.155 kcal (2) G-P(sol) polarization free energy of solvation -88.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds