Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00297 * 2 1 4 4 H 1.48499 * 109.47444 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47412 * 120.00080 * 3 2 1 7 7 C 1.38815 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00059 * 163.56970 * 7 2 1 9 9 N 1.36932 * 120.00279 * 343.57614 * 7 2 1 10 10 C 1.47157 * 120.97774 * 333.28254 * 9 7 2 11 11 C 1.53297 * 108.41314 * 230.53840 * 10 9 7 12 12 O 1.42962 * 109.22437 * 307.67992 * 11 10 9 13 13 C 1.42960 * 114.16676 * 62.57800 * 12 11 10 14 14 H 1.09000 * 109.51064 * 57.39464 * 13 12 11 15 15 C 1.53005 * 109.51288 * 177.49244 * 13 12 11 16 16 N 1.46495 * 109.47439 * 300.00606 * 15 13 12 17 17 C 1.34768 * 120.00083 * 179.97438 * 16 15 13 18 18 O 1.21288 * 120.00337 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00052 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.47098 * 179.97438 * 19 17 16 21 21 C 1.46373 * 119.33530 * 269.73020 * 20 19 17 22 22 C 1.53488 * 109.01824 * 150.82698 * 21 20 19 23 23 C 1.53238 * 108.43372 * 55.78704 * 22 21 20 24 24 N 1.46386 * 109.15399 * 304.38808 * 23 22 21 25 25 C 1.34130 * 121.33875 * 29.05289 * 24 23 22 26 26 O 1.21584 * 118.69668 * 179.45289 * 25 24 23 27 27 C 1.47221 * 121.03615 * 153.29797 * 9 7 2 28 28 H 0.96999 * 119.99798 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.68251 * 110.79706 * 10 9 7 30 30 H 1.08994 * 109.68478 * 350.27977 * 10 9 7 31 31 H 1.08994 * 109.51338 * 67.60497 * 11 10 9 32 32 H 1.09003 * 109.51043 * 187.75650 * 11 10 9 33 33 H 1.09007 * 109.46496 * 60.00590 * 15 13 12 34 34 H 1.08998 * 109.46686 * 179.97438 * 15 13 12 35 35 H 0.97001 * 119.99941 * 359.97438 * 16 15 13 36 36 H 1.08997 * 109.47388 * 299.99843 * 19 17 16 37 37 H 1.09006 * 109.47041 * 60.00240 * 19 17 16 38 38 H 1.09000 * 109.52449 * 270.86799 * 21 20 19 39 39 H 1.08998 * 109.52286 * 31.05638 * 21 20 19 40 40 H 1.09003 * 109.80044 * 296.03818 * 22 21 20 41 41 H 1.08999 * 109.73244 * 175.49885 * 22 21 20 42 42 H 1.09004 * 109.52795 * 184.47804 * 23 22 21 43 43 H 1.08999 * 109.52187 * 64.28488 * 23 22 21 44 44 H 0.96998 * 119.32395 * 209.03323 * 24 23 22 45 45 H 1.09008 * 109.66792 * 9.74205 * 27 9 7 46 46 H 1.08995 * 109.68176 * 249.19854 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0572 -1.2212 -0.2651 9 7 1.3675 -2.3640 0.3342 10 6 0.1948 -2.3519 1.2231 11 6 0.4191 -3.3835 2.3347 12 8 0.7567 -4.6424 1.7474 13 6 1.9732 -4.6305 0.9966 14 1 2.7930 -4.3050 1.6369 15 6 2.2631 -6.0379 0.4709 16 7 2.3951 -6.9630 1.5991 17 6 2.6527 -8.2667 1.3749 18 8 2.7748 -8.6742 0.2391 19 6 2.7890 -9.2183 2.5355 20 7 3.0653 -10.5661 2.0321 21 6 1.9481 -11.4665 1.7428 22 6 2.3599 -12.4303 0.6214 23 6 3.6391 -13.1560 1.0517 24 7 4.6648 -12.1657 1.3835 25 6 4.3372 -10.9518 1.8508 26 8 5.2285 -10.1700 2.1205 27 6 1.8285 -3.6628 -0.1835 28 1 -0.4850 0.8401 0.0004 29 1 -0.6987 -2.6120 0.6556 30 1 0.0760 -1.3607 1.6607 31 1 1.2330 -3.0526 2.9796 32 1 -0.4926 -3.4889 2.9228 33 1 1.4437 -6.3619 -0.1708 34 1 3.1905 -6.0279 -0.1018 35 1 2.2971 -6.6372 2.5075 36 1 3.6089 -8.8944 3.1766 37 1 1.8617 -9.2278 3.1084 38 1 1.6949 -12.0325 2.6393 39 1 1.0843 -10.8840 1.4226 40 1 2.5470 -11.8714 -0.2956 41 1 1.5661 -13.1575 0.4512 42 1 3.9921 -13.7868 0.2358 43 1 3.4316 -13.7724 1.9263 44 1 5.6003 -12.3920 1.2631 45 1 2.7924 -3.5396 -0.6775 46 1 1.0996 -4.0550 -0.8926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = -73.919380 kcal Electronic energy + Delta-G solvation = -28203.554227 eV Core-core repulsion = 24129.383859 eV Total energy + Delta-G solvation = -4074.170368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.99598 -39.39991 -38.37780 -36.64910 -35.23969 -34.74495 -34.23911 -31.67605 -31.32065 -30.72478 -28.68587 -27.31301 -25.93090 -25.07227 -23.35668 -23.13590 -21.81326 -20.67696 -19.67724 -19.22996 -17.86954 -17.55563 -17.27575 -16.87783 -16.12003 -15.94661 -15.77964 -15.06142 -14.96624 -14.75090 -14.46877 -14.33076 -14.24883 -14.05578 -13.84729 -13.52227 -13.19894 -13.07097 -12.85092 -12.69282 -12.34850 -11.82789 -11.74831 -11.66117 -11.54407 -11.12383 -10.84578 -10.73366 -10.41403 -10.30226 -10.29472 -10.10502 -9.98795 -9.68077 -9.38259 -9.09291 -8.92114 -8.82558 -8.55171 -6.76427 -5.85573 -3.29694 2.32871 2.70728 2.96061 3.33580 3.35206 3.40465 3.41803 3.56460 4.22932 4.26959 4.41497 4.42572 4.66565 4.79357 4.84275 4.95755 5.04886 5.14055 5.16801 5.24934 5.30896 5.32067 5.48736 5.51773 5.71172 5.80603 5.88524 5.97037 6.03669 6.14738 6.27487 6.28957 6.36124 6.47756 6.56703 6.74699 6.81029 7.08803 7.49717 7.55159 7.60283 7.69601 7.83695 8.29475 8.32392 8.38983 9.10195 9.72574 10.29762 11.22597 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.032224 B = 0.002180 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.719580 B =12838.196379 C =13130.833383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.133 3.867 16 N -0.718 5.718 17 C 0.494 3.506 18 O -0.538 6.538 19 C 0.112 3.888 20 N -0.605 5.605 21 C 0.116 3.884 22 C -0.154 4.154 23 C 0.111 3.889 24 N -0.737 5.737 25 C 0.717 3.283 26 O -0.596 6.596 27 C 0.122 3.878 28 H 0.256 0.744 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.404 0.596 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.414 0.586 45 H 0.064 0.936 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -25.776 6.965 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.009 3.991 16 N -0.370 5.370 17 C 0.279 3.721 18 O -0.415 6.415 19 C -0.015 4.015 20 N -0.341 5.341 21 C -0.007 4.007 22 C -0.192 4.192 23 C -0.014 4.014 24 N -0.395 5.395 25 C 0.418 3.582 26 O -0.475 6.475 27 C -0.006 4.006 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.238 0.762 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.251 0.749 45 H 0.082 0.918 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.276 -25.612 6.298 26.473 hybrid contribution 0.632 1.212 0.180 1.379 sum 2.908 -24.400 6.477 25.412 Atomic orbital electron populations 1.70018 1.05275 1.25792 1.53671 1.25063 0.95370 0.98499 1.00698 0.86307 0.78857 0.83020 0.78214 1.20770 1.21549 1.20954 1.19159 0.92462 0.84380 1.42518 0.91395 1.44068 1.33552 1.01139 1.53008 1.21438 0.89142 0.98184 0.89863 1.23324 0.99024 0.85001 0.96457 1.87763 1.41242 1.32899 1.69047 1.22808 0.87482 0.93905 0.95268 0.92290 1.21393 1.01916 0.87135 0.88687 1.45885 1.72342 1.07974 1.10834 1.21147 0.76543 0.83061 0.91393 1.90684 1.49845 1.77282 1.23641 1.21188 1.04445 0.81160 0.94727 1.46297 1.04559 1.13667 1.69610 1.21622 0.89510 0.91932 0.97645 1.22234 0.97979 0.99387 0.99623 1.21524 0.88501 0.90873 1.00496 1.44879 1.10400 1.13632 1.70621 1.15329 0.82815 0.82154 0.77928 1.90960 1.46327 1.52024 1.58168 1.21458 0.98955 0.87197 0.92960 0.93436 0.95394 0.88819 0.94072 0.90044 0.90880 0.90337 0.76207 0.86575 0.87370 0.91502 0.89840 0.89785 0.88617 0.89954 0.91819 0.74877 0.91786 0.95266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.14 55.49 0.62 -25.33 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 9 N -0.59 -14.87 3.05 -171.77 -0.52 -15.40 16 10 C 0.14 3.29 5.44 -3.53 -0.02 3.27 16 11 C 0.04 0.75 6.99 37.31 0.26 1.01 16 12 O -0.39 -7.12 10.13 -35.23 -0.36 -7.48 16 13 C 0.07 1.14 2.87 -26.57 -0.08 1.06 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.13 2.05 5.37 -4.04 -0.02 2.03 16 16 N -0.72 -9.55 5.45 -60.29 -0.33 -9.88 16 17 C 0.49 6.88 7.89 -10.99 -0.09 6.80 16 18 O -0.54 -9.55 16.43 5.55 0.09 -9.46 16 19 C 0.11 1.16 5.80 -5.19 -0.03 1.13 16 20 N -0.60 -6.49 2.30 -181.00 -0.42 -6.91 16 21 C 0.12 0.83 6.50 -3.86 -0.03 0.81 16 22 C -0.15 -0.92 6.21 -26.36 -0.16 -1.09 16 23 C 0.11 0.59 7.20 -3.98 -0.03 0.56 16 24 N -0.74 -6.64 5.58 -65.53 -0.37 -7.01 16 25 C 0.72 9.23 8.17 -88.06 -0.72 8.51 16 26 O -0.60 -10.13 16.49 5.29 0.09 -10.04 16 27 C 0.12 2.55 6.03 -3.49 -0.02 2.53 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 4.54 8.35 -40.82 -0.34 4.20 16 36 H 0.12 1.22 7.30 -51.93 -0.38 0.84 16 37 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.41 3.25 8.88 -40.82 -0.36 2.88 16 45 H 0.06 1.29 7.96 -51.92 -0.41 0.88 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -36.53 373.22 -9.04 -45.57 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.27 Total: 4.35 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: -1.16 Total: 19.49 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -1.02 Total: -64.52 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.18 Total: -26.97 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.53 -9.04 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.351 kcal (2) G-P(sol) polarization free energy of solvation -36.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds