Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42891 * 114.00571 * 2 1 4 4 C 1.53006 * 109.47460 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47059 * 64.99518 * 4 3 2 6 6 C 1.46493 * 120.00304 * 270.00609 * 5 4 3 7 7 C 1.53004 * 109.46771 * 270.00087 * 6 5 4 8 8 O 1.42901 * 109.47495 * 64.99858 * 7 6 5 9 9 C 1.42895 * 114.00262 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99982 * 90.00180 * 5 4 3 11 11 O 1.21591 * 119.99638 * 359.97438 * 10 5 4 12 12 N 1.34768 * 120.00283 * 180.02562 * 10 5 4 13 13 C 1.40196 * 120.00423 * 180.02562 * 12 10 5 14 14 C 1.40405 * 125.97001 * 0.02562 * 13 12 10 15 15 C 1.35238 * 107.87064 * 179.74102 * 14 13 12 16 16 N 1.34966 * 107.85507 * 0.36692 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.89559 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31207 * 125.97824 * 179.97438 * 13 12 10 27 27 H 1.09000 * 109.47221 * 300.00586 * 1 2 3 28 28 H 1.09001 * 109.46710 * 60.00042 * 1 2 3 29 29 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47433 * 59.99830 * 3 2 1 31 31 H 1.08997 * 109.47317 * 299.99550 * 3 2 1 32 32 H 1.09004 * 109.46582 * 305.00098 * 4 3 2 33 33 H 1.09001 * 109.46985 * 184.99838 * 4 3 2 34 34 H 1.08997 * 109.47239 * 29.99517 * 6 5 4 35 35 H 1.08992 * 109.47703 * 150.00288 * 6 5 4 36 36 H 1.09006 * 109.46988 * 184.99841 * 7 6 5 37 37 H 1.08999 * 109.46973 * 304.99844 * 7 6 5 38 38 H 1.09000 * 109.46897 * 59.99828 * 9 8 7 39 39 H 1.08994 * 109.47214 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.47301 * 300.00295 * 9 8 7 41 41 H 0.97000 * 119.99831 * 359.97438 * 12 10 5 42 42 H 1.08004 * 126.06253 * 359.96901 * 14 13 12 43 43 H 1.07999 * 126.07487 * 180.25848 * 15 14 13 44 44 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 45 45 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 46 46 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1844 0.0006 5 7 3.9768 0.5636 -1.2508 6 6 4.1062 -0.8928 -1.3402 7 6 5.5229 -1.3047 -0.9349 8 8 5.7348 -0.9902 0.4428 9 6 7.0344 -1.3371 0.9251 10 6 4.2635 1.3325 -2.3200 11 8 4.1556 2.5413 -2.2460 12 7 4.6689 0.7614 -3.4715 13 6 4.9677 1.5612 -4.5835 14 6 4.8891 2.9620 -4.6368 15 6 5.2626 3.3517 -5.8768 16 7 5.5591 2.2431 -6.5873 17 6 6.0062 2.2086 -7.9819 18 6 7.3106 1.4593 -8.0730 19 1 7.7612 1.0494 -7.1811 20 6 7.9287 1.2971 -9.2946 21 7 7.3773 1.7917 -10.3814 22 14 9.5452 0.3677 -9.4075 23 1 9.9954 0.3277 -10.8221 24 1 10.5700 1.0549 -8.5811 25 1 9.3551 -1.0181 -8.9091 26 7 5.3705 1.1316 -5.7560 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 3.8508 0.5682 0.8427 33 1 3.9786 2.1763 0.0902 34 1 3.3857 -1.3634 -0.6713 35 1 3.9139 -1.2126 -2.3643 36 1 5.6468 -2.3771 -1.0860 37 1 6.2468 -0.7657 -1.5461 38 1 7.7899 -0.7991 0.3525 39 1 7.1155 -1.0662 1.9777 40 1 7.1892 -2.4102 0.8127 41 1 4.7546 -0.2030 -3.5306 42 1 4.5877 3.6131 -3.8295 43 1 5.3130 4.3692 -6.2355 44 1 6.1464 3.2273 -8.3438 45 1 5.2554 1.7065 -8.5919 46 1 6.5378 2.2741 -10.3228 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173339993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = -25.446301 kcal Electronic energy + Delta-G solvation = -28187.011810 eV Core-core repulsion = 24114.943392 eV Total energy + Delta-G solvation = -4072.068418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89414 -39.90855 -38.11382 -37.98275 -35.58146 -34.87723 -33.64527 -31.36419 -30.65838 -29.33742 -28.97002 -26.71124 -26.43503 -26.04734 -23.76979 -23.22189 -22.77776 -21.11331 -20.31555 -19.23129 -18.10308 -17.16541 -17.10660 -16.60236 -16.49451 -16.34668 -15.95829 -15.76954 -15.38293 -14.95035 -14.81678 -14.57546 -14.12673 -13.96019 -13.77345 -13.19828 -13.12415 -12.86559 -12.49110 -12.32823 -12.19912 -12.17387 -12.08642 -12.01247 -11.77971 -11.54159 -11.18984 -11.14646 -10.80885 -10.42599 -10.16203 -10.09730 -9.93929 -9.90522 -9.64111 -9.00698 -8.79942 -8.57225 -8.14479 -7.43664 -6.57039 -4.30943 2.35248 2.61640 3.06758 3.36445 3.38168 3.39445 3.48782 3.57252 3.58621 3.81806 4.06335 4.41544 4.73669 4.86107 4.90737 4.95610 5.00666 5.08054 5.12746 5.13388 5.16629 5.18656 5.20856 5.22979 5.37501 5.41993 5.43295 5.52981 5.64955 5.75849 5.78182 6.14763 6.33618 6.49136 6.52960 6.70311 6.78526 6.83000 6.88658 7.01030 7.45715 7.64237 7.87159 7.89110 8.36022 8.57780 8.59173 8.65787 9.37271 10.80412 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.002828 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.706717 B = 9897.334837 C =11103.947858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.042 3.958 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.112 3.888 7 C 0.037 3.963 8 O -0.384 6.384 9 C 0.032 3.968 10 C 0.714 3.286 11 O -0.568 6.568 12 N -0.644 5.644 13 C 0.278 3.722 14 C -0.283 4.283 15 C 0.050 3.950 16 N -0.320 5.320 17 C 0.250 3.750 18 C -0.607 4.607 19 H 0.063 0.937 20 C 0.022 3.978 21 N -0.905 5.905 22 Si 1.077 2.923 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.285 1.285 26 N -0.306 5.306 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.405 0.595 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 -5.063 23.431 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.036 4.036 4 C 0.019 3.981 5 N -0.349 5.349 6 C -0.012 4.012 7 C -0.041 4.041 8 O -0.303 6.303 9 C -0.065 4.065 10 C 0.415 3.585 11 O -0.444 6.444 12 N -0.296 5.296 13 C 0.023 3.977 14 C -0.314 4.314 15 C -0.100 4.100 16 N -0.101 5.101 17 C 0.132 3.868 18 C -0.645 4.645 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.904 3.096 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.212 1.212 26 N -0.137 5.137 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.241 0.759 42 H 0.179 0.821 43 H 0.184 0.816 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.861 -5.788 21.711 23.805 hybrid contribution -1.298 0.754 1.290 1.979 sum -9.158 -5.034 23.001 25.264 Atomic orbital electron populations 1.22706 0.81346 1.02507 0.99857 1.87853 1.19433 1.28031 1.95430 1.23110 0.94842 0.84848 1.00789 1.21405 0.91159 1.00340 0.85184 1.46888 1.70657 1.05854 1.11463 1.21653 0.95988 0.80880 1.02632 1.23158 0.97897 0.99589 0.83447 1.87862 1.32724 1.84386 1.25333 1.22732 0.84700 0.99113 0.99952 1.15629 0.78091 0.85142 0.79620 1.90845 1.59157 1.11825 1.82547 1.41583 1.69631 1.09495 1.08867 1.18813 1.01164 0.90274 0.87407 1.21524 1.17701 0.93343 0.98862 1.22546 1.01193 0.93595 0.92660 1.48745 1.48048 1.01698 1.11646 1.19734 0.96507 0.98661 0.71914 1.22106 1.06143 1.39016 0.97243 0.91875 1.25917 1.04061 0.96830 0.91410 1.70849 1.19444 1.33979 1.29826 0.83423 0.74170 0.75918 0.76127 1.20528 1.21260 1.21164 1.77331 1.25931 1.10488 0.99966 0.94281 0.94209 0.89821 0.92484 0.92666 0.88651 0.88327 0.87810 0.89434 0.92047 0.92832 0.94051 0.89699 0.94137 0.75896 0.82051 0.81597 0.93672 0.94847 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.85 9.53 -35.23 -0.34 -4.19 16 3 C 0.04 0.41 6.28 37.16 0.23 0.64 16 4 C 0.14 1.48 5.63 -4.04 -0.02 1.45 16 5 N -0.61 -7.24 2.40 -179.42 -0.43 -7.67 16 6 C 0.11 1.05 5.40 -4.04 -0.02 1.03 16 7 C 0.04 0.34 6.28 37.16 0.23 0.57 16 8 O -0.38 -3.81 9.53 -35.23 -0.34 -4.15 16 9 C 0.03 0.24 11.01 101.05 1.11 1.36 16 10 C 0.71 11.14 8.25 -86.92 -0.72 10.42 16 11 O -0.57 -10.42 13.05 5.29 0.07 -10.36 16 12 N -0.64 -10.56 5.32 -15.51 -0.08 -10.64 16 13 C 0.28 5.74 8.11 -154.36 -1.25 4.49 16 14 C -0.28 -5.78 9.61 -39.83 -0.38 -6.16 16 15 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 16 N -0.32 -7.59 3.67 -62.56 -0.23 -7.82 16 17 C 0.25 6.40 5.57 -5.19 -0.03 6.37 16 18 C -0.61 -17.18 9.24 -34.44 -0.32 -17.50 16 19 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 21 N -0.91 -26.49 13.65 55.43 0.76 -25.73 16 22 Si 1.08 24.99 29.90 -169.99 -5.08 19.90 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 N -0.31 -7.20 12.42 31.44 0.39 -6.81 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.91 7.12 -51.93 -0.37 0.54 16 33 H 0.10 1.09 7.42 -51.93 -0.39 0.70 16 34 H 0.10 0.92 7.11 -51.93 -0.37 0.55 16 35 H 0.09 0.74 6.36 -51.93 -0.33 0.41 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.40 5.58 6.55 -40.82 -0.27 5.31 16 42 H 0.16 3.22 5.91 -52.48 -0.31 2.91 16 43 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 44 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 45 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 46 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -34.63 384.99 -6.84 -41.47 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.01 Total: 4.82 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.35 Total: 5.38 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.40 Total: -58.68 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.60 Total: -18.69 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.63 -6.84 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173339993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.021 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds