Wall clock time and date at job start Tue Mar 31 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42891 * 114.00571 * 2 1 4 4 C 1.53006 * 109.47460 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47059 * 64.99518 * 4 3 2 6 6 C 1.46493 * 120.00304 * 270.00609 * 5 4 3 7 7 C 1.53004 * 109.46771 * 270.00087 * 6 5 4 8 8 O 1.42901 * 109.47495 * 64.99858 * 7 6 5 9 9 C 1.42895 * 114.00262 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99982 * 90.00180 * 5 4 3 11 11 O 1.21591 * 119.99638 * 359.97438 * 10 5 4 12 12 N 1.34768 * 120.00283 * 180.02562 * 10 5 4 13 13 C 1.40196 * 120.00423 * 180.02562 * 12 10 5 14 14 C 1.40405 * 125.97001 * 0.02562 * 13 12 10 15 15 C 1.35238 * 107.87064 * 179.74102 * 14 13 12 16 16 N 1.34966 * 107.85507 * 0.36692 * 15 14 13 17 17 C 1.46500 * 125.97782 * 179.89559 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71059 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31207 * 125.97824 * 179.97438 * 13 12 10 27 27 H 1.09000 * 109.47221 * 300.00586 * 1 2 3 28 28 H 1.09001 * 109.46710 * 60.00042 * 1 2 3 29 29 H 1.09000 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47433 * 59.99830 * 3 2 1 31 31 H 1.08997 * 109.47317 * 299.99550 * 3 2 1 32 32 H 1.09004 * 109.46582 * 305.00098 * 4 3 2 33 33 H 1.09001 * 109.46985 * 184.99838 * 4 3 2 34 34 H 1.08997 * 109.47239 * 29.99517 * 6 5 4 35 35 H 1.08992 * 109.47703 * 150.00288 * 6 5 4 36 36 H 1.09006 * 109.46988 * 184.99841 * 7 6 5 37 37 H 1.08999 * 109.46973 * 304.99844 * 7 6 5 38 38 H 1.09000 * 109.46897 * 59.99828 * 9 8 7 39 39 H 1.08994 * 109.47214 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.47301 * 300.00295 * 9 8 7 41 41 H 0.97000 * 119.99831 * 359.97438 * 12 10 5 42 42 H 1.08004 * 126.06253 * 359.96901 * 14 13 12 43 43 H 1.07999 * 126.07487 * 180.25848 * 15 14 13 44 44 H 1.09004 * 109.47078 * 4.71821 * 17 16 15 45 45 H 1.08993 * 109.47364 * 244.71592 * 17 16 15 46 46 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1844 0.0006 5 7 3.9768 0.5636 -1.2508 6 6 4.1062 -0.8928 -1.3402 7 6 5.5229 -1.3047 -0.9349 8 8 5.7348 -0.9902 0.4428 9 6 7.0344 -1.3371 0.9251 10 6 4.2635 1.3325 -2.3200 11 8 4.1556 2.5413 -2.2460 12 7 4.6689 0.7614 -3.4715 13 6 4.9677 1.5612 -4.5835 14 6 4.8891 2.9620 -4.6368 15 6 5.2626 3.3517 -5.8768 16 7 5.5591 2.2431 -6.5873 17 6 6.0062 2.2086 -7.9819 18 6 7.3106 1.4593 -8.0730 19 1 7.7612 1.0494 -7.1811 20 6 7.9287 1.2971 -9.2946 21 7 7.3773 1.7917 -10.3814 22 14 9.5452 0.3677 -9.4075 23 1 9.9954 0.3277 -10.8221 24 1 10.5700 1.0549 -8.5811 25 1 9.3551 -1.0181 -8.9091 26 7 5.3705 1.1316 -5.7560 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 3.8508 0.5682 0.8427 33 1 3.9786 2.1763 0.0902 34 1 3.3857 -1.3634 -0.6713 35 1 3.9139 -1.2126 -2.3643 36 1 5.6468 -2.3771 -1.0860 37 1 6.2468 -0.7657 -1.5461 38 1 7.7899 -0.7991 0.3525 39 1 7.1155 -1.0662 1.9777 40 1 7.1892 -2.4102 0.8127 41 1 4.7546 -0.2030 -3.5306 42 1 4.5877 3.6131 -3.8295 43 1 5.3130 4.3692 -6.2355 44 1 6.1464 3.2273 -8.3438 45 1 5.2554 1.7065 -8.5919 46 1 6.5378 2.2741 -10.3228 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173339993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:26 Heat of formation + Delta-G solvation = -48.655855 kcal Electronic energy + Delta-G solvation = -28188.018251 eV Core-core repulsion = 24114.943392 eV Total energy + Delta-G solvation = -4073.074859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36812 -41.25252 -38.97786 -38.70102 -36.64308 -36.39174 -35.53548 -32.79166 -31.85077 -30.98868 -29.90090 -28.13764 -27.31797 -26.94930 -25.30918 -24.31330 -23.98582 -22.57171 -21.84335 -20.56590 -19.28623 -19.14612 -18.30584 -17.72255 -17.28247 -17.22178 -16.99600 -16.66993 -16.55796 -16.13583 -15.94791 -15.71227 -15.56124 -15.40158 -15.17753 -14.86173 -14.23702 -13.98166 -13.81855 -13.74101 -13.53797 -13.22719 -13.04958 -12.92484 -12.86074 -12.73844 -12.60820 -12.21412 -12.03147 -11.95373 -11.91648 -11.67590 -11.11682 -11.00361 -10.69089 -10.64109 -10.60005 -9.91665 -9.73919 -9.12766 -8.76354 -6.55350 0.98389 1.06344 1.50988 1.57587 1.62714 1.78961 1.94954 2.32777 2.48744 2.76410 2.81959 2.88287 3.01649 3.83613 3.99135 4.05386 4.13450 4.18541 4.21996 4.28735 4.39478 4.46940 4.52556 4.54873 4.56871 4.57938 4.58702 4.62422 4.74140 4.78461 4.86021 4.86629 4.87301 4.91422 4.95670 5.11611 5.48591 5.55713 5.72513 5.84439 5.95083 6.18024 6.22434 6.27831 6.42318 6.56625 7.02375 7.20545 7.34429 8.58868 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.002828 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.706717 B = 9897.334837 C =11103.947858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.048 3.952 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.110 3.890 7 C 0.040 3.960 8 O -0.399 6.399 9 C 0.028 3.972 10 C 0.711 3.289 11 O -0.598 6.598 12 N -0.638 5.638 13 C 0.287 3.713 14 C -0.289 4.289 15 C 0.056 3.944 16 N -0.344 5.344 17 C 0.260 3.740 18 C -0.621 4.621 19 H 0.045 0.955 20 C -0.019 4.019 21 N -0.924 5.924 22 Si 1.120 2.880 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.274 1.274 26 N -0.346 5.346 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.416 0.584 42 H 0.168 0.832 43 H 0.201 0.799 44 H 0.054 0.946 45 H 0.016 0.984 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 -5.931 25.184 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.029 4.029 4 C 0.019 3.981 5 N -0.337 5.337 6 C -0.012 4.012 7 C -0.038 4.038 8 O -0.319 6.319 9 C -0.069 4.069 10 C 0.412 3.588 11 O -0.476 6.476 12 N -0.291 5.291 13 C 0.031 3.969 14 C -0.320 4.320 15 C -0.092 4.092 16 N -0.126 5.126 17 C 0.141 3.859 18 C -0.659 4.659 19 H 0.064 0.936 20 C -0.219 4.219 21 N -0.560 5.560 22 Si 0.940 3.060 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.200 1.200 26 N -0.177 5.177 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.255 0.745 42 H 0.186 0.814 43 H 0.218 0.782 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.854 -6.684 23.524 25.685 hybrid contribution -1.413 1.012 0.914 1.964 sum -9.267 -5.672 24.438 26.745 Atomic orbital electron populations 1.22858 0.80081 1.03614 1.00274 1.87818 1.20823 1.27924 1.95516 1.23000 0.94137 0.84979 1.00825 1.21526 0.91810 1.00125 0.84641 1.46984 1.69238 1.06784 1.10668 1.21850 0.96679 0.79133 1.03572 1.23137 0.96912 1.00705 0.83079 1.87830 1.33795 1.84778 1.25447 1.22864 0.83584 0.99893 1.00517 1.15789 0.77944 0.85064 0.79954 1.90811 1.60446 1.13256 1.83067 1.41587 1.69527 1.09852 1.08105 1.19101 0.99212 0.91025 0.87565 1.21698 1.17842 0.93435 0.99027 1.23155 0.99427 0.94352 0.92295 1.48548 1.49979 1.02754 1.11340 1.19411 0.94933 0.98374 0.73204 1.22289 1.07338 1.39491 0.96768 0.93645 1.27278 1.06739 0.96871 0.90973 1.70945 1.19649 1.35006 1.30397 0.82886 0.71003 0.75461 0.76615 1.19995 1.19680 1.19974 1.77251 1.28141 1.11250 1.01099 0.92884 0.94768 0.88438 0.90268 0.94788 0.87328 0.89165 0.86694 0.88544 0.89741 0.94571 0.94835 0.88381 0.92816 0.74532 0.81427 0.78185 0.92867 0.96581 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.22 9.53 -148.98 -1.42 -8.64 16 3 C 0.05 0.87 6.28 71.98 0.45 1.32 16 4 C 0.14 2.76 5.63 86.38 0.49 3.24 16 5 N -0.60 -13.59 2.40 -839.83 -2.02 -15.61 16 6 C 0.11 1.87 5.40 86.38 0.47 2.34 16 7 C 0.04 0.66 6.28 71.98 0.45 1.11 16 8 O -0.40 -7.19 9.53 -148.98 -1.42 -8.61 16 9 C 0.03 0.38 11.01 113.37 1.25 1.63 16 10 C 0.71 21.83 8.25 179.06 1.48 23.31 16 11 O -0.60 -21.81 13.05 -4.00 -0.05 -21.86 16 12 N -0.64 -20.66 5.32 -321.24 -1.71 -22.37 16 13 C 0.29 11.85 8.11 133.31 1.08 12.93 16 14 C -0.29 -11.68 9.61 22.11 0.21 -11.47 16 15 C 0.06 2.25 11.44 83.52 0.96 3.21 16 16 N -0.34 -16.48 3.67 -351.84 -1.29 -17.77 16 17 C 0.26 13.53 5.57 85.64 0.48 14.01 16 18 C -0.62 -35.56 9.24 25.60 0.24 -35.33 16 19 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 20 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 21 N -0.92 -54.26 13.65 21.45 0.29 -53.97 16 22 Si 1.12 49.76 29.90 68.60 2.05 51.81 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 N -0.35 -16.48 12.42 -54.43 -0.68 -17.15 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.86 7.12 -2.38 -0.02 1.85 16 33 H 0.09 1.93 7.42 -2.39 -0.02 1.91 16 34 H 0.11 1.77 7.11 -2.39 -0.02 1.76 16 35 H 0.10 1.47 6.36 -2.39 -0.02 1.45 16 36 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.42 11.23 6.55 -92.71 -0.61 10.62 16 42 H 0.17 6.61 5.91 -2.91 -0.02 6.60 16 43 H 0.20 6.37 8.06 -2.91 -0.02 6.35 16 44 H 0.05 2.65 7.94 -2.39 -0.02 2.64 16 45 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 46 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 Total: -1.00 -74.32 384.99 3.50 -70.82 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.48 Total: 26.04 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 9.25 Total: 17.31 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.40 Total: -126.87 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -2.89 Total: -39.11 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -74.32 3.50 -70.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173339993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.168 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds