Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99806 * 2 1 4 4 H 1.48503 * 109.46879 * 240.00033 * 3 2 1 5 5 H 1.48496 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47549 * 120.00131 * 3 2 1 7 7 C 1.37878 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99743 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99700 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46725 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47384 * 66.88687 * 12 11 10 14 14 C 1.46850 * 111.00491 * 284.78833 * 13 12 11 15 15 C 1.53027 * 109.52623 * 185.83623 * 14 13 12 16 16 C 1.53121 * 109.28038 * 300.81929 * 15 14 13 17 17 C 1.53001 * 109.52094 * 177.55926 * 16 15 14 18 18 H 1.09002 * 109.47318 * 299.42296 * 17 16 15 19 19 O 1.42899 * 109.47190 * 59.42788 * 17 16 15 20 20 C 1.50703 * 109.46855 * 179.42765 * 17 16 15 21 21 O 1.21281 * 119.99893 * 256.60399 * 20 17 16 22 22 N 1.34780 * 119.99963 * 76.60277 * 20 17 16 23 23 C 1.46503 * 119.99867 * 175.46333 * 22 20 17 24 24 C 1.52999 * 117.49873 * 223.47527 * 23 22 20 25 25 C 1.53002 * 117.49692 * 154.81453 * 23 22 20 26 26 C 1.53119 * 109.21093 * 57.62441 * 16 15 14 27 27 C 1.46849 * 110.99727 * 48.99747 * 13 12 11 28 28 H 0.96995 * 120.00083 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47127 * 59.99865 * 9 7 2 30 30 H 1.08995 * 109.47198 * 299.99928 * 9 7 2 31 31 H 1.09000 * 109.47021 * 60.00347 * 11 10 9 32 32 H 1.08995 * 109.47002 * 299.99989 * 11 10 9 33 33 H 1.08999 * 109.47684 * 306.88708 * 12 11 10 34 34 H 1.09006 * 109.47313 * 186.88669 * 12 11 10 35 35 H 1.09001 * 109.45934 * 65.81905 * 14 13 12 36 36 H 1.08998 * 109.45812 * 305.85429 * 14 13 12 37 37 H 1.09000 * 109.50364 * 180.87648 * 15 14 13 38 38 H 1.09000 * 109.53474 * 60.78238 * 15 14 13 39 39 H 1.09000 * 109.52250 * 297.68778 * 16 15 14 40 40 H 0.96703 * 113.99429 * 59.99794 * 19 17 16 41 41 H 0.96995 * 120.00081 * 355.19578 * 22 20 17 42 42 H 1.08999 * 115.54807 * 9.14877 * 23 22 20 43 43 H 1.09000 * 117.50047 * 359.97438 * 24 23 22 44 44 H 1.09000 * 117.49804 * 145.02398 * 24 23 22 45 45 H 1.09001 * 117.49517 * 214.98054 * 25 23 22 46 46 H 1.08994 * 117.49870 * 359.97438 * 25 23 22 47 47 H 1.09005 * 109.50462 * 62.31860 * 26 16 15 48 48 H 1.09003 * 109.50444 * 182.43743 * 26 16 15 49 49 H 1.09003 * 109.46629 * 294.17460 * 27 13 12 50 50 H 1.08997 * 109.46382 * 54.15830 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9561 0.0017 13 7 3.3788 -5.9166 1.2755 14 6 4.3006 -4.7742 1.3184 15 6 5.1460 -4.8467 2.5918 16 6 4.2229 -4.8277 3.8134 17 6 5.0587 -4.9613 5.0879 18 1 5.6019 -5.9061 5.0689 19 8 5.9884 -3.8787 5.1635 20 6 4.1504 -4.9283 6.2900 21 8 4.0730 -3.9231 6.9641 22 7 3.4241 -6.0159 6.6158 23 6 2.6177 -6.0186 7.8390 24 6 2.6550 -7.2782 8.7068 25 6 1.4060 -6.9516 7.8842 26 6 3.2404 -5.9984 3.7207 27 6 2.4512 -5.8934 2.4136 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8902 31 1 0.9448 -4.9827 -0.8887 32 1 0.9454 -4.9822 0.8913 33 1 3.3412 -5.7766 -0.8202 34 1 2.1848 -6.9351 -0.1211 35 1 3.7290 -3.8461 1.3143 36 1 4.9540 -4.8020 0.4465 37 1 5.8192 -3.9903 2.6310 38 1 5.7288 -5.7678 2.5904 39 1 3.6697 -3.8889 3.8372 40 1 5.5740 -3.0052 5.1842 41 1 3.4321 -6.7952 6.0385 42 1 2.5331 -5.0587 8.3484 43 1 3.2790 -8.1049 8.3674 44 1 2.5944 -7.1470 9.7872 45 1 0.5243 -6.6057 8.4237 46 1 1.2084 -7.5630 7.0037 47 1 3.7919 -6.9386 3.7372 48 1 2.5529 -5.9643 4.5658 49 1 1.8883 -4.9600 2.4045 50 1 1.7616 -6.7341 2.3374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339101875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = -135.407051 kcal Electronic energy + Delta-G solvation = -29298.837516 eV Core-core repulsion = 25325.541186 eV Total energy + Delta-G solvation = -3973.296330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60498 -40.22290 -38.66705 -38.10709 -37.18167 -35.28135 -34.72819 -33.70328 -31.73520 -30.65410 -29.21091 -27.75899 -24.91653 -24.55892 -24.18068 -23.26950 -22.89386 -22.19742 -21.79115 -20.58396 -19.01305 -18.65894 -18.01838 -17.51121 -17.27350 -16.98513 -16.79904 -16.43539 -15.87824 -15.74682 -15.63003 -15.41135 -15.33228 -15.17896 -14.61584 -14.25330 -14.05234 -13.76880 -13.71972 -13.44592 -13.16028 -13.11878 -12.97988 -12.78433 -12.73962 -12.52885 -12.43898 -12.36599 -12.24926 -12.07130 -11.95814 -11.61014 -11.56538 -11.45575 -11.35523 -11.18651 -10.88804 -10.53232 -10.25666 -9.77828 -9.16388 -8.37273 -6.49779 1.35482 1.36515 1.39739 1.47979 1.96749 2.29392 2.93876 2.96787 2.97313 3.22097 3.26032 3.54026 3.65132 3.76179 3.81583 3.97672 4.05951 4.07212 4.12145 4.21202 4.24975 4.36451 4.48525 4.50685 4.59368 4.65507 4.71308 4.75484 4.77390 4.80799 4.82458 4.89704 4.99641 5.02513 5.04689 5.11626 5.12810 5.21065 5.22660 5.23836 5.45062 5.49133 5.51427 5.90635 6.13852 6.19040 6.30879 6.48005 6.52287 6.75824 7.08741 7.22373 8.74754 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.003330 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.355432 B = 8407.060507 C = 9130.669720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.213 3.787 10 O -0.395 6.395 11 C 0.012 3.988 12 C 0.064 3.936 13 N -0.517 5.517 14 C 0.047 3.953 15 C -0.092 4.092 16 C -0.109 4.109 17 C 0.110 3.890 18 H 0.153 0.847 19 O -0.550 6.550 20 C 0.489 3.511 21 O -0.581 6.581 22 N -0.684 5.684 23 C 0.043 3.957 24 C -0.176 4.176 25 C -0.176 4.176 26 C -0.111 4.111 27 C 0.050 3.950 28 H 0.271 0.729 29 H -0.019 1.019 30 H -0.024 1.024 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.388 0.612 41 H 0.419 0.581 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.005 0.995 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -20.536 12.344 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.138 3.862 10 O -0.314 6.314 11 C -0.066 4.066 12 C -0.064 4.064 13 N -0.241 5.241 14 C -0.081 4.081 15 C -0.129 4.129 16 C -0.129 4.129 17 C 0.048 3.952 18 H 0.170 0.830 19 O -0.355 6.355 20 C 0.277 3.723 21 O -0.461 6.461 22 N -0.337 5.337 23 C -0.063 4.063 24 C -0.214 4.214 25 C -0.214 4.214 26 C -0.149 4.149 27 C -0.078 4.078 28 H 0.079 0.921 29 H -0.001 1.001 30 H -0.006 1.006 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.237 0.763 41 H 0.258 0.742 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.131 0.869 47 H 0.125 0.875 48 H 0.096 0.904 49 H 0.024 0.976 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.507 -20.599 12.844 25.409 hybrid contribution -1.559 2.232 -0.465 2.762 sum 5.948 -18.367 12.379 22.934 Atomic orbital electron populations 1.70057 1.07778 1.28689 1.50486 1.25938 0.95911 1.03354 0.93929 0.85300 0.78199 0.76943 0.79433 1.18767 1.19992 1.19176 1.21311 0.93965 0.90738 1.52186 0.92034 1.19723 0.88615 0.85079 0.92796 1.87885 1.34602 1.14027 1.94930 1.23441 0.98030 0.85463 0.99663 1.22361 0.94478 0.96833 0.92707 1.62350 1.18235 1.41550 1.01919 1.22206 0.95103 0.92415 0.98354 1.21443 0.96736 1.03265 0.91484 1.21749 0.97007 0.99735 0.94377 1.22035 0.89984 0.93824 0.89393 0.82977 1.86518 1.34837 1.17993 1.96172 1.22053 0.80561 0.82857 0.86858 1.90692 1.66957 1.33533 1.54896 1.45512 1.45982 1.17692 1.24537 1.21649 0.98228 0.96872 0.89515 1.23513 1.00761 0.98151 0.99000 1.23481 0.92647 1.01928 1.03386 1.21794 0.97745 0.98714 0.96607 1.22128 0.94678 0.99971 0.91003 0.92064 1.00107 1.00609 0.94097 0.94138 0.90374 0.86396 0.95227 0.91382 0.91714 0.89153 0.93746 0.76259 0.74199 0.87202 0.86996 0.87373 0.87434 0.86900 0.87472 0.90434 0.97647 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.98 45.11 29.54 68.60 2.03 47.14 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -32.61 9.43 25.60 0.24 -32.37 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.05 5.69 71.24 0.41 12.45 16 10 O -0.39 -18.68 7.55 -148.98 -1.13 -19.80 16 11 C 0.01 0.44 5.56 71.98 0.40 0.84 16 12 C 0.06 1.72 6.00 86.30 0.52 2.24 16 13 N -0.52 -13.36 4.86 -896.36 -4.36 -17.71 16 14 C 0.05 1.43 4.94 86.32 0.43 1.85 16 15 C -0.09 -2.19 5.19 30.64 0.16 -2.03 16 16 C -0.11 -2.49 2.01 -10.71 -0.02 -2.51 16 17 C 0.11 2.24 3.00 29.85 0.09 2.33 16 18 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 19 O -0.55 -13.73 12.45 -130.49 -1.62 -15.35 16 20 C 0.49 11.64 6.71 87.66 0.59 12.23 16 21 O -0.58 -19.39 15.88 15.46 0.25 -19.15 16 22 N -0.68 -11.30 4.43 -442.52 -1.96 -13.26 16 23 C 0.04 0.73 6.44 44.99 0.29 1.02 16 24 C -0.18 -1.88 10.46 30.62 0.32 -1.56 16 25 C -0.18 -1.97 10.46 30.62 0.32 -1.65 16 26 C -0.11 -2.00 4.17 30.65 0.13 -1.87 16 27 C 0.05 1.21 4.51 86.33 0.39 1.60 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 30 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.45 6.01 -2.39 -0.01 1.44 16 33 H 0.08 2.14 7.88 -2.39 -0.02 2.12 16 34 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.03 1.19 5.81 -2.39 -0.01 1.18 16 36 H 0.07 2.05 7.96 -2.39 -0.02 2.03 16 37 H 0.06 1.67 7.75 -2.39 -0.02 1.65 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.39 9.53 8.67 -74.05 -0.64 8.89 16 41 H 0.42 4.20 7.06 -92.71 -0.65 3.54 16 42 H 0.11 2.46 7.39 -2.39 -0.02 2.44 16 43 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.08 1.29 5.87 -2.39 -0.01 1.27 16 49 H 0.01 0.17 6.43 -2.39 -0.02 0.16 16 50 H 0.09 1.84 8.12 -2.39 -0.02 1.82 16 Total: -1.00 -76.36 392.15 -2.15 -78.51 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.35 Total: 22.69 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 4.72 Total: -6.54 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -6.03 Total: -87.49 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -2.50 Total: -54.30 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.36 -2.15 -78.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339101875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.901 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds